Wall clock time and date at job start Tue Mar 31 2020 23:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.46900 * 111.00108 * 205.00462 * 13 11 10 15 15 C 1.53000 * 109.47136 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47119 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99933 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99931 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99985 * 180.02562 * 18 16 15 20 20 C 1.50692 * 109.47088 * 179.97438 * 19 18 16 21 21 O 1.20830 * 120.00026 * 0.02562 * 20 19 18 22 22 O 1.34230 * 119.99994 * 179.97438 * 20 19 18 23 23 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 24 24 C 1.38243 * 119.99881 * 279.73067 * 23 11 10 25 25 C 1.38236 * 119.99546 * 179.78181 * 24 23 11 26 26 C 1.38230 * 120.00068 * 0.44148 * 25 24 23 27 27 C 1.38228 * 120.00363 * 359.81337 * 26 25 24 28 28 C 1.38231 * 119.99932 * 359.97297 * 27 26 25 29 29 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 34 34 H 1.00891 * 110.99568 * 81.04576 * 13 11 10 35 35 H 1.09001 * 109.46729 * 299.99669 * 14 13 11 36 36 H 1.08996 * 109.47288 * 59.99365 * 14 13 11 37 37 H 1.08998 * 109.46510 * 299.99661 * 15 14 13 38 38 H 1.08996 * 109.47126 * 59.99370 * 15 14 13 39 39 H 0.97000 * 120.00175 * 359.97438 * 18 16 15 40 40 H 1.08992 * 109.46795 * 300.00210 * 19 18 16 41 41 H 1.09000 * 109.46697 * 60.00039 * 19 18 16 42 42 H 0.96706 * 117.00095 * 180.02562 * 22 20 19 43 43 H 1.07998 * 119.99681 * 359.97438 * 24 23 11 44 44 H 1.08001 * 119.99400 * 180.27071 * 25 24 23 45 45 H 1.08007 * 119.99792 * 179.83387 * 26 25 24 46 46 H 1.07998 * 120.00222 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9148 -2.0473 -0.8419 13 7 6.0411 -2.0516 1.2552 14 6 7.3884 -1.4917 1.0846 15 6 7.8637 -0.8934 2.4102 16 6 9.2462 -0.3196 2.2353 17 8 9.7972 -0.3833 1.1567 18 7 9.8701 0.2644 3.2774 19 6 11.2139 0.8228 3.1073 20 6 11.6815 1.4130 4.4126 21 8 10.9660 1.3711 5.3854 22 8 12.8933 1.9844 4.4949 23 6 6.0537 -4.0522 -0.1241 24 6 6.0933 -4.8715 0.9887 25 6 6.5499 -6.1713 0.8740 26 6 6.9754 -6.6488 -0.3514 27 6 6.9407 -5.8279 -1.4630 28 6 6.4800 -4.5296 -1.3494 29 1 -0.4850 0.8401 -0.0004 30 1 3.8751 -0.6798 -0.8895 31 1 3.8745 -0.6810 0.8905 32 1 3.6577 -3.1507 0.8897 33 1 3.6584 -3.1504 -0.8902 34 1 6.0233 -2.7303 2.0016 35 1 8.0737 -2.2814 0.7764 36 1 7.3646 -0.7133 0.3220 37 1 7.1785 -0.1039 2.7188 38 1 7.8877 -1.6722 3.1724 39 1 9.4293 0.3157 4.1399 40 1 11.8990 0.0332 2.7990 41 1 11.1899 1.6013 2.3448 42 1 13.1495 2.3489 5.3532 43 1 5.7647 -4.4971 1.9469 44 1 6.5768 -6.8127 1.7425 45 1 7.3346 -7.6634 -0.4404 46 1 7.2727 -6.2012 -2.4205 47 1 6.4525 -3.8884 -2.2179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:42 Heat of formation + Delta-G solvation = -110.332906 kcal Electronic energy + Delta-G solvation = -27765.481521 eV Core-core repulsion = 23719.669304 eV Total energy + Delta-G solvation = -4045.812217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.71 seconds Orbital eigenvalues (eV) -41.03661 -39.89047 -39.46966 -36.90065 -36.63651 -34.94417 -33.71862 -32.45774 -30.89747 -30.57490 -30.07877 -28.40370 -26.33095 -23.45893 -23.26330 -22.41128 -21.82260 -20.77921 -20.71556 -19.76061 -18.68213 -17.92925 -17.17289 -16.87346 -16.60641 -16.46727 -15.96442 -15.88003 -15.30929 -15.15630 -14.62192 -14.23722 -14.09368 -14.05853 -13.70758 -13.38731 -13.31758 -13.26871 -12.90241 -12.77617 -12.48072 -12.30817 -12.17847 -11.72285 -11.63797 -11.48576 -11.30981 -11.13248 -10.97097 -10.82888 -10.65971 -10.21137 -9.82765 -9.72645 -9.63917 -9.58269 -9.03325 -8.86951 -8.52241 -8.42494 -8.16561 -5.93211 -3.89357 1.42535 1.45547 1.51250 2.06225 2.34382 2.93718 3.39871 3.46806 3.54162 3.84900 4.22886 4.52160 4.56711 4.65065 4.68765 4.80028 4.87486 4.92534 4.99008 5.02682 5.16317 5.17794 5.42391 5.47895 5.54849 5.56167 5.66832 5.79843 5.83773 5.88500 6.02424 6.03388 6.07359 6.12504 6.48550 6.49344 6.54528 6.62272 6.71556 7.02400 7.03606 7.09724 7.20394 7.26470 7.50991 7.59695 7.73078 7.85386 7.94680 8.66808 9.13100 9.70740 11.20636 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.006851 B = 0.003174 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4086.147028 B = 8819.607664 C =12238.445472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.516 4.516 8 H 0.068 0.932 9 C -0.006 4.006 10 C -0.083 4.083 11 C 0.124 3.876 12 H 0.083 0.917 13 N -0.672 5.672 14 C 0.074 3.926 15 C -0.138 4.138 16 C 0.524 3.476 17 O -0.535 6.535 18 N -0.730 5.730 19 C 0.127 3.873 20 C 0.478 3.522 21 O -0.511 6.511 22 O -0.510 6.510 23 C -0.098 4.098 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.119 4.119 28 C -0.113 4.113 29 H 0.261 0.739 30 H 0.004 0.996 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.337 0.663 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.414 0.586 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.417 0.583 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.049 -4.331 7.450 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.554 4.554 8 H 0.086 0.914 9 C -0.043 4.043 10 C -0.121 4.121 11 C 0.015 3.985 12 H 0.101 0.899 13 N -0.302 5.302 14 C -0.056 4.056 15 C -0.178 4.178 16 C 0.311 3.689 17 O -0.410 6.410 18 N -0.388 5.388 19 C 0.002 3.998 20 C 0.320 3.680 21 O -0.398 6.398 22 O -0.322 6.322 23 C -0.100 4.100 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.149 4.149 27 C -0.137 4.137 28 C -0.132 4.132 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.157 0.843 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.251 0.749 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.277 0.723 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 25.676 -3.801 6.476 26.751 hybrid contribution 0.860 0.349 0.991 1.358 sum 26.536 -3.452 7.468 27.782 Atomic orbital electron populations 1.69931 1.06349 1.26656 1.51965 1.25021 0.94665 0.99143 0.94802 0.86779 0.80626 0.83584 0.78350 1.20620 1.21748 1.18518 1.21233 0.89992 0.94193 1.49965 0.91384 1.19487 0.96117 0.91953 0.96752 1.21450 0.89148 1.00491 1.00968 1.20872 0.97744 0.87804 0.92128 0.89860 1.60658 1.22897 1.39646 1.07044 1.21669 0.89262 0.99074 0.95552 1.21624 0.92482 1.02759 1.00941 1.20810 0.87980 0.76950 0.83146 1.90739 1.67285 1.57187 1.25814 1.45851 1.16514 1.61042 1.15431 1.20559 0.86374 1.00746 0.92168 1.23279 0.79126 0.74824 0.90762 1.90757 1.55322 1.54982 1.38788 1.84487 1.34744 1.69955 1.42985 1.20926 0.97247 0.98195 0.93601 1.20952 1.00262 0.94021 0.98555 1.21079 0.99312 0.95685 0.97543 1.21079 1.01156 0.99561 0.93149 1.21124 0.99949 0.94166 0.98460 1.21100 0.98880 0.95912 0.97303 0.92975 0.97812 0.94919 0.92594 0.92659 0.84324 0.94598 0.90125 0.87253 0.88711 0.74872 0.86917 0.86841 0.72283 0.86072 0.86368 0.86532 0.86364 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.65 13.96 55.43 0.77 -27.87 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.27 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.14 3.93 -27.88 -0.11 -0.25 16 10 C -0.08 -1.62 4.81 -26.74 -0.13 -1.75 16 11 C 0.12 1.97 2.22 -68.86 -0.15 1.81 16 12 H 0.08 1.36 7.66 -51.93 -0.40 0.96 16 13 N -0.67 -9.64 5.69 -107.95 -0.61 -10.25 16 14 C 0.07 0.96 4.77 -3.82 -0.02 0.95 16 15 C -0.14 -1.40 5.96 -27.88 -0.17 -1.56 16 16 C 0.52 5.67 7.83 -10.99 -0.09 5.59 16 17 O -0.53 -7.60 15.98 5.55 0.09 -7.51 16 18 N -0.73 -6.07 5.53 -61.47 -0.34 -6.41 16 19 C 0.13 0.86 6.27 -5.19 -0.03 0.83 16 20 C 0.48 3.18 8.40 36.00 0.30 3.48 16 21 O -0.51 -4.84 16.43 -18.75 -0.31 -5.14 16 22 O -0.51 -2.23 13.42 -39.26 -0.53 -2.76 16 23 C -0.10 -1.39 4.71 -104.62 -0.49 -1.88 16 24 C -0.12 -1.53 9.12 -39.58 -0.36 -1.89 16 25 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 26 C -0.13 -1.48 10.05 -39.59 -0.40 -1.87 16 27 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 28 C -0.11 -1.52 9.67 -39.58 -0.38 -1.90 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.00 0.09 7.57 -51.93 -0.39 -0.31 16 31 H 0.03 0.79 6.81 -51.93 -0.35 0.44 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.34 4.26 6.34 -39.30 -0.25 4.01 16 35 H 0.04 0.48 7.96 -51.93 -0.41 0.07 16 36 H 0.08 1.18 8.01 -51.93 -0.42 0.77 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.41 3.09 7.44 -40.82 -0.30 2.78 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.42 0.15 9.10 45.56 0.41 0.56 16 43 H 0.12 1.41 6.50 -52.49 -0.34 1.07 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.51 8.04 -52.49 -0.42 1.09 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -36.78 396.93 -9.13 -45.91 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.27 Total: 5.94 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.25 Total: -15.50 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.18 Total: -44.54 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.75 Total: -15.41 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.78 -9.13 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.420 kcal (2) G-P(sol) polarization free energy of solvation -36.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.71 seconds