Wall clock time and date at job start Tue Mar 31 2020 23:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 14 14 C 1.46900 * 111.00108 * 205.00462 * 13 11 10 15 15 C 1.53000 * 109.47136 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47119 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99933 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99931 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99985 * 180.02562 * 18 16 15 20 20 C 1.50692 * 109.47088 * 179.97438 * 19 18 16 21 21 O 1.20830 * 120.00026 * 0.02562 * 20 19 18 22 22 O 1.34230 * 119.99994 * 179.97438 * 20 19 18 23 23 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 24 24 C 1.38243 * 119.99881 * 279.73067 * 23 11 10 25 25 C 1.38236 * 119.99546 * 179.78181 * 24 23 11 26 26 C 1.38230 * 120.00068 * 0.44148 * 25 24 23 27 27 C 1.38228 * 120.00363 * 359.81337 * 26 25 24 28 28 C 1.38231 * 119.99932 * 359.97297 * 27 26 25 29 29 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 34 34 H 1.00891 * 110.99568 * 81.04576 * 13 11 10 35 35 H 1.09001 * 109.46729 * 299.99669 * 14 13 11 36 36 H 1.08996 * 109.47288 * 59.99365 * 14 13 11 37 37 H 1.08998 * 109.46510 * 299.99661 * 15 14 13 38 38 H 1.08996 * 109.47126 * 59.99370 * 15 14 13 39 39 H 0.97000 * 120.00175 * 359.97438 * 18 16 15 40 40 H 1.08992 * 109.46795 * 300.00210 * 19 18 16 41 41 H 1.09000 * 109.46697 * 60.00039 * 19 18 16 42 42 H 0.96706 * 117.00095 * 180.02562 * 22 20 19 43 43 H 1.07998 * 119.99681 * 359.97438 * 24 23 11 44 44 H 1.08001 * 119.99400 * 180.27071 * 25 24 23 45 45 H 1.08007 * 119.99792 * 179.83387 * 26 25 24 46 46 H 1.07998 * 120.00222 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 1 5.9148 -2.0473 -0.8419 13 7 6.0411 -2.0516 1.2552 14 6 7.3884 -1.4917 1.0846 15 6 7.8637 -0.8934 2.4102 16 6 9.2462 -0.3196 2.2353 17 8 9.7972 -0.3833 1.1567 18 7 9.8701 0.2644 3.2774 19 6 11.2139 0.8228 3.1073 20 6 11.6815 1.4130 4.4126 21 8 10.9660 1.3711 5.3854 22 8 12.8933 1.9844 4.4949 23 6 6.0537 -4.0522 -0.1241 24 6 6.0933 -4.8715 0.9887 25 6 6.5499 -6.1713 0.8740 26 6 6.9754 -6.6488 -0.3514 27 6 6.9407 -5.8279 -1.4630 28 6 6.4800 -4.5296 -1.3494 29 1 -0.4850 0.8401 -0.0004 30 1 3.8751 -0.6798 -0.8895 31 1 3.8745 -0.6810 0.8905 32 1 3.6577 -3.1507 0.8897 33 1 3.6584 -3.1504 -0.8902 34 1 6.0233 -2.7303 2.0016 35 1 8.0737 -2.2814 0.7764 36 1 7.3646 -0.7133 0.3220 37 1 7.1785 -0.1039 2.7188 38 1 7.8877 -1.6722 3.1724 39 1 9.4293 0.3157 4.1399 40 1 11.8990 0.0332 2.7990 41 1 11.1899 1.6013 2.3448 42 1 13.1495 2.3489 5.3532 43 1 5.7647 -4.4971 1.9469 44 1 6.5768 -6.8127 1.7425 45 1 7.3346 -7.6634 -0.4404 46 1 7.2727 -6.2012 -2.4205 47 1 6.4525 -3.8884 -2.2179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066350.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:19 Heat of formation + Delta-G solvation = -137.325908 kcal Electronic energy + Delta-G solvation = -27766.652025 eV Core-core repulsion = 23719.669304 eV Total energy + Delta-G solvation = -4046.982721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.18 seconds Orbital eigenvalues (eV) -41.61294 -40.76343 -40.39368 -37.81278 -37.33493 -35.70471 -35.42518 -34.05463 -32.22112 -31.80989 -30.93698 -29.26281 -27.90988 -24.88498 -24.22992 -23.26893 -22.51979 -22.24047 -21.58910 -21.14386 -19.22242 -18.85908 -18.60322 -18.06659 -17.44807 -17.28072 -16.72491 -16.68034 -16.39138 -16.19064 -16.00100 -15.57255 -15.25774 -15.09267 -14.77963 -14.64743 -14.32995 -14.20783 -13.97231 -13.86221 -13.69812 -13.59905 -13.38544 -12.90473 -12.67031 -12.64146 -12.44464 -12.34184 -12.11506 -11.88214 -11.87164 -11.69044 -11.49888 -11.40153 -11.19696 -11.08710 -10.69734 -10.35420 -9.80332 -9.57971 -9.31685 -8.23645 -6.25595 0.46514 0.52176 1.00843 1.39129 1.40817 1.51651 1.53808 1.55450 2.33914 2.41895 2.89861 3.12851 3.24308 3.75549 3.81312 3.96760 4.05308 4.12852 4.16934 4.19290 4.23218 4.30269 4.35571 4.36908 4.54352 4.64685 4.66111 4.70009 4.84409 4.94744 4.98779 5.01320 5.12391 5.17340 5.19265 5.28875 5.47281 5.58188 5.59954 5.62963 5.64225 5.71719 5.78845 6.13285 6.14598 6.32952 6.36975 6.54769 6.82808 6.83231 7.08230 7.38510 8.93532 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.006851 B = 0.003174 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4086.147028 B = 8819.607664 C =12238.445472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.526 4.526 8 H 0.027 0.973 9 C 0.003 3.997 10 C -0.073 4.073 11 C 0.137 3.863 12 H 0.075 0.925 13 N -0.679 5.679 14 C 0.082 3.918 15 C -0.132 4.132 16 C 0.526 3.474 17 O -0.573 6.573 18 N -0.720 5.720 19 C 0.122 3.878 20 C 0.490 3.510 21 O -0.541 6.541 22 O -0.504 6.504 23 C -0.116 4.116 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.131 4.131 27 C -0.124 4.124 28 C -0.132 4.132 29 H 0.264 0.736 30 H 0.004 0.996 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.347 0.653 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.419 0.581 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.436 0.564 43 H 0.130 0.870 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.140 0.860 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.794 -4.446 8.488 30.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.565 4.565 8 H 0.046 0.954 9 C -0.035 4.035 10 C -0.111 4.111 11 C 0.027 3.973 12 H 0.093 0.907 13 N -0.311 5.311 14 C -0.048 4.048 15 C -0.172 4.172 16 C 0.314 3.686 17 O -0.452 6.452 18 N -0.377 5.377 19 C -0.003 4.003 20 C 0.333 3.667 21 O -0.432 6.432 22 O -0.318 6.318 23 C -0.117 4.117 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.149 4.149 27 C -0.142 4.142 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.168 0.832 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.258 0.742 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.299 0.701 43 H 0.147 0.853 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.158 0.842 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 28.462 -3.914 7.555 29.707 hybrid contribution 0.010 0.289 0.678 0.737 sum 28.472 -3.625 8.233 29.860 Atomic orbital electron populations 1.70086 1.08322 1.27921 1.53452 1.25998 0.95546 1.03463 0.94385 0.85654 0.79785 0.78265 0.78921 1.19759 1.21176 1.16519 1.21603 0.92644 0.92752 1.49454 0.95448 1.19371 0.92717 0.94788 0.96599 1.21250 0.92336 0.97438 1.00077 1.20475 0.94696 0.89418 0.92683 0.90716 1.60573 1.23841 1.40002 1.06682 1.21531 0.88310 0.98237 0.96682 1.21567 0.92148 1.03551 0.99931 1.20835 0.88067 0.76741 0.82933 1.90727 1.68219 1.58964 1.27305 1.45744 1.17015 1.59936 1.15008 1.20689 0.85727 1.01277 0.92587 1.23109 0.79285 0.74223 0.90035 1.90753 1.56316 1.56405 1.39728 1.84448 1.33424 1.69397 1.44506 1.20759 0.98981 0.97340 0.94663 1.21134 1.00438 0.94672 0.98470 1.21425 0.98381 0.95356 0.98750 1.21480 0.99993 1.00712 0.92675 1.21425 0.99391 0.93535 0.99888 1.21271 0.99629 0.96981 0.97141 0.92727 0.97738 0.94660 0.93202 0.93929 0.83151 0.95159 0.92209 0.86767 0.86084 0.74199 0.85930 0.86307 0.70115 0.85255 0.83843 0.83744 0.84243 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.80 13.96 21.45 0.30 -61.50 16 2 C 0.00 0.11 5.47 84.66 0.46 0.58 16 3 Si 0.95 46.01 27.47 68.60 1.88 47.89 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.24 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.53 -31.38 9.66 25.60 0.25 -31.14 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 9 C 0.00 0.13 3.93 29.85 0.12 0.25 16 10 C -0.07 -2.92 4.81 30.59 0.15 -2.78 16 11 C 0.14 4.35 2.22 44.16 0.10 4.45 16 12 H 0.07 2.47 7.66 -2.39 -0.02 2.45 16 13 N -0.68 -18.94 5.69 -495.44 -2.82 -21.75 16 14 C 0.08 2.07 4.77 86.30 0.41 2.48 16 15 C -0.13 -2.46 5.96 29.85 0.18 -2.28 16 16 C 0.53 10.72 7.83 87.66 0.69 11.40 16 17 O -0.57 -15.94 15.98 -3.06 -0.05 -15.99 16 18 N -0.72 -10.80 5.53 -466.79 -2.58 -13.38 16 19 C 0.12 1.46 6.27 85.63 0.54 1.99 16 20 C 0.49 5.64 8.40 71.23 0.60 6.24 16 21 O -0.54 -9.44 16.43 21.95 0.36 -9.08 16 22 O -0.50 -3.31 13.42 -51.41 -0.69 -4.00 16 23 C -0.12 -3.22 4.71 -19.86 -0.09 -3.32 16 24 C -0.13 -3.13 9.12 22.27 0.20 -2.92 16 25 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 26 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 27 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 28 C -0.13 -3.46 9.67 22.27 0.22 -3.24 16 29 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.00 0.21 7.57 -2.39 -0.02 0.19 16 31 H 0.04 1.68 6.81 -2.39 -0.02 1.67 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.35 8.32 6.34 -89.70 -0.57 7.75 16 35 H 0.03 0.80 7.96 -2.39 -0.02 0.78 16 36 H 0.06 1.75 8.01 -2.39 -0.02 1.74 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 5.50 7.44 -92.71 -0.69 4.81 16 40 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.44 -0.68 9.10 -74.05 -0.67 -1.36 16 43 H 0.13 2.81 6.50 -2.91 -0.02 2.79 16 44 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 46 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 47 H 0.12 3.05 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -81.07 396.93 -0.09 -81.16 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.98 Total: 22.06 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.48 Total: -25.42 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -5.10 Total: -96.63 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.38 Total: -29.07 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.89 kcal Total: -81.07 -0.09 -81.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066350.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.164 kcal (2) G-P(sol) polarization free energy of solvation -81.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.18 seconds