Wall clock time and date at job start Wed Apr 1 2020 00:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 N 1.46901 * 109.46941 * 270.02015 * 14 13 12 16 16 C 1.46894 * 110.99955 * 180.02562 * 15 14 13 17 17 C 1.53113 * 109.52492 * 274.68201 * 16 15 14 18 18 C 1.53037 * 109.28332 * 182.44051 * 17 16 15 19 19 N 1.46846 * 109.52075 * 59.17985 * 18 17 16 20 20 C 1.46905 * 111.00042 * 174.16292 * 19 18 17 21 21 C 1.50704 * 109.47087 * 294.20907 * 20 19 18 22 22 O 1.20824 * 119.99619 * 0.02562 * 21 20 19 23 23 O 1.34222 * 120.00069 * 179.97438 * 21 20 19 24 24 C 1.46845 * 111.19862 * 298.25908 * 19 18 17 25 25 C 1.53033 * 109.52321 * 61.74269 * 24 19 18 26 26 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 27 27 C 1.38101 * 120.07071 * 359.95556 * 26 13 12 28 28 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 31 31 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 32 32 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 33 33 H 1.00898 * 111.00066 * 56.04240 * 15 14 13 34 34 H 1.08997 * 109.52309 * 34.87491 * 16 15 14 35 35 H 1.09001 * 109.50476 * 302.38116 * 17 16 15 36 36 H 1.09002 * 109.50335 * 62.49911 * 17 16 15 37 37 H 1.08998 * 109.46220 * 299.16210 * 18 17 16 38 38 H 1.09000 * 109.45957 * 179.18851 * 18 17 16 39 39 H 1.09006 * 109.47087 * 54.20707 * 20 19 18 40 40 H 1.08996 * 109.47009 * 174.21128 * 20 19 18 41 41 H 0.96703 * 116.99842 * 180.02562 * 23 21 20 42 42 H 1.09003 * 109.46307 * 301.72249 * 24 19 18 43 43 H 1.09004 * 109.45264 * 181.75596 * 24 19 18 44 44 H 1.09003 * 109.50415 * 180.88064 * 25 24 19 45 45 H 1.09001 * 109.50567 * 60.76176 * 25 24 19 46 46 H 1.07999 * 119.96326 * 179.97438 * 26 13 12 47 47 H 1.07997 * 120.03156 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2555 -6.6953 -0.8933 16 6 6.9249 -8.0005 -0.8160 17 6 8.4251 -7.7937 -0.5898 18 6 9.1256 -9.1542 -0.5710 19 7 8.8952 -9.8424 -1.8475 20 6 9.6664 -11.0907 -1.9193 21 6 11.1390 -10.7711 -1.9388 22 8 11.5081 -9.6214 -1.8967 23 8 12.0404 -11.7635 -2.0019 24 6 7.4649 -10.0943 -2.0644 25 6 6.7148 -8.7619 -2.1278 26 6 3.8531 -4.7987 0.2042 27 6 3.2232 -3.5745 0.0950 28 1 -0.4849 0.8401 0.0004 29 1 5.9419 -1.5655 0.2316 30 1 7.0534 -3.7517 0.4353 31 1 6.8228 -6.0905 1.0369 32 1 5.2443 -6.9068 0.9360 33 1 6.8227 -6.0266 -1.3926 34 1 6.5070 -8.5759 0.0100 35 1 8.8342 -7.1849 -1.3961 36 1 8.5833 -7.2897 0.3637 37 1 8.7258 -9.7573 0.2442 38 1 10.1960 -9.0095 -0.4245 39 1 9.4401 -11.7081 -1.0499 40 1 9.3998 -11.6308 -2.8278 41 1 12.9734 -11.5093 -2.0117 42 1 7.0728 -10.6931 -1.2423 43 1 7.3292 -10.6325 -3.0025 44 1 5.6510 -8.9497 -2.2731 45 1 7.0969 -8.1683 -2.9583 46 1 3.2703 -5.7080 0.1940 47 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:42 Heat of formation + Delta-G solvation = -83.300370 kcal Electronic energy + Delta-G solvation = -27606.111659 eV Core-core repulsion = 23561.471661 eV Total energy + Delta-G solvation = -4044.639998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 19.10 seconds Orbital eigenvalues (eV) -40.86178 -39.44585 -39.06322 -37.20107 -36.53782 -35.62433 -32.64020 -32.18176 -31.13389 -30.23934 -29.58569 -27.59500 -25.59353 -24.14341 -23.50801 -22.66312 -22.07083 -21.54571 -20.55215 -19.98501 -18.50801 -17.86472 -17.25202 -17.00195 -16.58020 -16.46918 -15.46969 -15.17567 -15.00259 -14.93974 -14.57746 -14.21305 -14.01847 -13.91685 -13.74347 -13.42791 -13.37127 -13.09240 -12.85503 -12.71102 -12.53983 -12.34075 -12.16654 -11.98213 -11.85159 -11.56105 -11.44692 -11.28974 -11.09175 -10.89556 -10.75505 -10.69446 -10.59736 -10.44986 -10.12436 -9.36861 -8.86591 -8.84162 -8.32732 -8.22287 -7.30377 -6.40568 -4.07068 1.77013 2.15427 2.20295 2.39007 3.23454 3.26234 3.40935 3.45717 4.10734 4.24614 4.47083 4.51686 4.57901 4.65774 4.69980 4.79955 4.86522 4.91417 4.93757 5.07567 5.12150 5.21358 5.28411 5.34160 5.38209 5.43507 5.57081 5.65706 5.70034 5.77215 5.81062 5.87482 6.00618 6.06580 6.11068 6.16030 6.36679 6.46655 6.59043 6.60208 6.81611 6.99686 7.13353 7.25219 7.35198 7.47059 7.47569 7.63406 7.81919 8.05236 8.94749 9.57444 10.67067 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.001713 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.624994 B =16337.655761 C =16780.449103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.161 3.839 11 C -0.193 4.193 12 C -0.071 4.071 13 C -0.176 4.176 14 C 0.117 3.883 15 N -0.679 5.679 16 C 0.085 3.915 17 C -0.143 4.143 18 C 0.053 3.947 19 N -0.526 5.526 20 C 0.063 3.937 21 C 0.476 3.524 22 O -0.494 6.494 23 O -0.522 6.522 24 C 0.059 3.941 25 C -0.103 4.103 26 C -0.051 4.051 27 C -0.222 4.222 28 H 0.279 0.721 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.344 0.656 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.412 0.588 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.110 0.890 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.913 -24.415 -2.171 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.109 3.891 11 C -0.213 4.213 12 C -0.090 4.090 13 C -0.177 4.177 14 C -0.011 4.011 15 N -0.309 5.309 16 C -0.025 4.025 17 C -0.182 4.182 18 C -0.075 4.075 19 N -0.253 5.253 20 C -0.066 4.066 21 C 0.316 3.684 22 O -0.380 6.380 23 O -0.334 6.334 24 C -0.068 4.068 25 C -0.142 4.142 26 C -0.069 4.069 27 C -0.242 4.242 28 H 0.089 0.911 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.271 0.729 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.128 0.872 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.993 -23.780 -2.649 30.549 hybrid contribution 1.381 0.592 0.931 1.767 sum 20.373 -23.188 -1.718 30.915 Atomic orbital electron populations 1.69649 1.05551 1.28453 1.48097 1.24470 0.95032 0.98813 0.95707 0.86177 0.80304 0.81446 0.78950 1.19889 1.20832 1.18389 1.20777 0.76901 0.96638 1.52136 0.87604 1.83567 1.22623 1.25836 1.80294 1.19141 0.91698 0.85506 0.92758 1.20163 0.91982 0.97791 1.11327 1.20482 0.98073 0.91545 0.98849 1.19191 0.93771 0.93307 1.11454 1.20655 0.97506 0.93761 0.89180 1.60644 1.48359 1.04028 1.17841 1.21649 0.91274 0.91783 0.97826 1.22301 0.96672 0.96829 1.02440 1.22225 1.02016 0.94989 0.88256 1.61608 1.08323 1.20122 1.35205 1.21504 0.86903 0.93310 1.04872 1.23357 0.89651 0.83030 0.72319 1.90731 1.81234 1.21948 1.44111 1.84501 1.21641 1.41482 1.85776 1.22159 0.85536 0.98091 1.01046 1.21552 1.00064 0.94458 0.98092 1.20625 0.93497 0.96550 0.96267 1.21286 1.01130 0.91895 1.09852 0.91075 0.86656 0.87335 0.95379 0.91215 0.83763 0.90990 0.90585 0.91538 0.95055 0.89437 0.90568 0.86394 0.72907 0.94434 0.90177 0.90357 0.90768 0.87233 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.96 55.48 0.77 -24.72 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 21.81 28.62 -169.99 -4.86 16.95 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.39 -11.03 9.95 30.89 0.31 -10.72 16 8 H 0.11 3.06 5.44 -52.48 -0.29 2.78 16 9 O -0.22 -5.81 8.59 0.05 0.00 -5.81 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 12 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 13 C -0.18 -2.86 5.40 -104.57 -0.56 -3.42 16 14 C 0.12 1.49 5.61 -4.98 -0.03 1.46 16 15 N -0.68 -7.98 6.24 -107.87 -0.67 -8.65 16 16 C 0.09 0.81 2.53 -67.60 -0.17 0.64 16 17 C -0.14 -1.32 5.35 -26.65 -0.14 -1.47 16 18 C 0.05 0.46 5.11 -3.83 -0.02 0.44 16 19 N -0.53 -4.15 4.40 -236.11 -1.04 -5.19 16 20 C 0.06 0.36 5.56 -4.97 -0.03 0.33 16 21 C 0.48 3.49 8.00 36.01 0.29 3.78 16 22 O -0.49 -5.42 15.08 -18.75 -0.28 -5.71 16 23 O -0.52 -2.57 13.42 -39.24 -0.53 -3.09 16 24 C 0.06 0.40 5.46 -3.84 -0.02 0.38 16 25 C -0.10 -0.89 5.70 -26.65 -0.15 -1.04 16 26 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 27 C -0.22 -4.83 9.17 -39.40 -0.36 -5.19 16 28 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.03 0.33 7.45 -51.94 -0.39 -0.05 16 32 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 33 H 0.34 4.15 8.44 -39.29 -0.33 3.81 16 34 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 35 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.62 7.54 -51.93 -0.39 0.22 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.87 5.78 -51.93 -0.30 0.57 16 39 H 0.08 0.32 8.12 -51.93 -0.42 -0.10 16 40 H 0.12 0.45 7.99 -51.93 -0.41 0.04 16 41 H 0.41 0.51 9.10 45.56 0.41 0.92 16 42 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.44 8.02 -51.93 -0.42 0.02 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -32.35 383.46 -9.41 -41.76 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.17 Total: 5.43 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.41 Total: -16.75 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.94 Total: -38.56 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.81 Total: -14.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.35 -9.41 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.539 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.10 seconds