Wall clock time and date at job start Wed Apr 1 2020 00:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 N 1.46901 * 109.46941 * 270.02015 * 14 13 12 16 16 C 1.46894 * 110.99955 * 180.02562 * 15 14 13 17 17 C 1.53113 * 109.52492 * 274.68201 * 16 15 14 18 18 C 1.53037 * 109.28332 * 182.44051 * 17 16 15 19 19 N 1.46846 * 109.52075 * 59.17985 * 18 17 16 20 20 C 1.46905 * 111.00042 * 174.16292 * 19 18 17 21 21 C 1.50704 * 109.47087 * 294.20907 * 20 19 18 22 22 O 1.20824 * 119.99619 * 0.02562 * 21 20 19 23 23 O 1.34222 * 120.00069 * 179.97438 * 21 20 19 24 24 C 1.46845 * 111.19862 * 298.25908 * 19 18 17 25 25 C 1.53033 * 109.52321 * 61.74269 * 24 19 18 26 26 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 27 27 C 1.38101 * 120.07071 * 359.95556 * 26 13 12 28 28 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 31 31 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 32 32 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 33 33 H 1.00898 * 111.00066 * 56.04240 * 15 14 13 34 34 H 1.08997 * 109.52309 * 34.87491 * 16 15 14 35 35 H 1.09001 * 109.50476 * 302.38116 * 17 16 15 36 36 H 1.09002 * 109.50335 * 62.49911 * 17 16 15 37 37 H 1.08998 * 109.46220 * 299.16210 * 18 17 16 38 38 H 1.09000 * 109.45957 * 179.18851 * 18 17 16 39 39 H 1.09006 * 109.47087 * 54.20707 * 20 19 18 40 40 H 1.08996 * 109.47009 * 174.21128 * 20 19 18 41 41 H 0.96703 * 116.99842 * 180.02562 * 23 21 20 42 42 H 1.09003 * 109.46307 * 301.72249 * 24 19 18 43 43 H 1.09004 * 109.45264 * 181.75596 * 24 19 18 44 44 H 1.09003 * 109.50415 * 180.88064 * 25 24 19 45 45 H 1.09001 * 109.50567 * 60.76176 * 25 24 19 46 46 H 1.07999 * 119.96326 * 179.97438 * 26 13 12 47 47 H 1.07997 * 120.03156 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2555 -6.6953 -0.8933 16 6 6.9249 -8.0005 -0.8160 17 6 8.4251 -7.7937 -0.5898 18 6 9.1256 -9.1542 -0.5710 19 7 8.8952 -9.8424 -1.8475 20 6 9.6664 -11.0907 -1.9193 21 6 11.1390 -10.7711 -1.9388 22 8 11.5081 -9.6214 -1.8967 23 8 12.0404 -11.7635 -2.0019 24 6 7.4649 -10.0943 -2.0644 25 6 6.7148 -8.7619 -2.1278 26 6 3.8531 -4.7987 0.2042 27 6 3.2232 -3.5745 0.0950 28 1 -0.4849 0.8401 0.0004 29 1 5.9419 -1.5655 0.2316 30 1 7.0534 -3.7517 0.4353 31 1 6.8228 -6.0905 1.0369 32 1 5.2443 -6.9068 0.9360 33 1 6.8227 -6.0266 -1.3926 34 1 6.5070 -8.5759 0.0100 35 1 8.8342 -7.1849 -1.3961 36 1 8.5833 -7.2897 0.3637 37 1 8.7258 -9.7573 0.2442 38 1 10.1960 -9.0095 -0.4245 39 1 9.4401 -11.7081 -1.0499 40 1 9.3998 -11.6308 -2.8278 41 1 12.9734 -11.5093 -2.0117 42 1 7.0728 -10.6931 -1.2423 43 1 7.3292 -10.6325 -3.0025 44 1 5.6510 -8.9497 -2.2731 45 1 7.0969 -8.1683 -2.9583 46 1 3.2703 -5.7080 0.1940 47 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:32 Heat of formation + Delta-G solvation = -106.970893 kcal Electronic energy + Delta-G solvation = -27607.138090 eV Core-core repulsion = 23561.471661 eV Total energy + Delta-G solvation = -4045.666429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.97 seconds Orbital eigenvalues (eV) -41.40641 -40.90620 -39.95700 -38.64311 -37.17391 -36.52629 -34.48594 -33.32835 -31.82084 -31.75121 -30.75931 -28.44114 -27.34514 -25.38913 -24.14939 -23.68054 -23.42132 -22.07577 -21.94531 -20.78593 -19.79574 -19.09038 -19.01212 -17.51412 -17.30866 -17.03176 -16.69058 -16.43449 -15.98109 -15.79138 -15.75073 -15.59514 -15.52189 -15.21622 -14.81800 -14.55411 -14.32572 -14.24161 -14.07278 -14.01817 -13.65528 -13.37089 -13.18809 -13.00915 -12.83033 -12.52279 -12.45880 -12.42193 -12.30183 -12.14809 -12.09088 -11.89818 -11.68688 -11.32861 -11.28169 -11.22349 -10.89502 -9.78751 -9.36527 -9.24638 -8.94949 -8.49671 -6.22162 0.58743 0.63792 1.25643 1.31223 1.35755 1.51472 1.99305 2.28117 2.73617 2.95622 3.02216 3.15477 3.44743 3.84774 3.93144 4.04110 4.08664 4.13008 4.19020 4.21538 4.32481 4.34012 4.42615 4.48219 4.52190 4.59756 4.61776 4.66290 4.72112 4.79474 4.90924 4.94172 4.99901 5.03035 5.12167 5.27267 5.28465 5.39000 5.42207 5.58026 5.67842 5.77035 5.83949 5.92117 5.95006 6.06537 6.18670 6.28612 6.51405 6.84637 7.05370 7.59401 8.61940 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.001713 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.624994 B =16337.655761 C =16780.449103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.193 4.193 12 C -0.062 4.062 13 C -0.149 4.149 14 C 0.122 3.878 15 N -0.687 5.687 16 C 0.091 3.909 17 C -0.137 4.137 18 C 0.058 3.942 19 N -0.544 5.544 20 C 0.062 3.938 21 C 0.479 3.521 22 O -0.538 6.538 23 O -0.516 6.516 24 C 0.064 3.936 25 C -0.101 4.101 26 C -0.054 4.054 27 C -0.239 4.239 28 H 0.284 0.716 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.342 0.658 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.140 0.860 41 H 0.427 0.573 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.131 0.869 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.638 -26.886 -1.904 35.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.212 4.212 12 C -0.081 4.081 13 C -0.150 4.150 14 C -0.007 4.007 15 N -0.317 5.317 16 C -0.019 4.019 17 C -0.176 4.176 18 C -0.071 4.071 19 N -0.271 5.271 20 C -0.067 4.067 21 C 0.322 3.678 22 O -0.428 6.428 23 O -0.329 6.329 24 C -0.063 4.063 25 C -0.140 4.140 26 C -0.072 4.072 27 C -0.258 4.258 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.158 0.842 41 H 0.289 0.711 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.149 0.851 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.759 -26.322 -2.385 34.234 hybrid contribution 0.776 0.974 0.841 1.502 sum 22.535 -25.349 -1.544 33.952 Atomic orbital electron populations 1.69733 1.06871 1.29560 1.50217 1.25287 0.95904 1.02143 0.95561 0.85205 0.78760 0.77408 0.79256 1.19117 1.19164 1.18760 1.20710 0.78141 0.96106 1.52600 0.90222 1.83508 1.21219 1.27536 1.83145 1.19691 0.93244 0.85057 0.95002 1.20490 0.90535 0.99787 1.10397 1.20941 1.00119 0.90233 0.96774 1.19686 0.92972 0.95317 1.06979 1.20644 0.98179 0.91639 0.90203 1.60610 1.49163 1.04920 1.17053 1.21655 0.91119 0.90570 0.98568 1.22209 0.96431 0.97192 1.01783 1.22108 1.00948 0.94843 0.89161 1.61535 1.09101 1.21579 1.34891 1.21654 0.85505 0.92670 1.06835 1.23725 0.90589 0.82545 0.70980 1.90722 1.82011 1.23675 1.46394 1.84473 1.22749 1.40661 1.85067 1.22136 0.84732 0.97074 1.02390 1.21514 1.00218 0.95260 0.96973 1.20887 0.94817 0.95815 0.95720 1.21287 1.00131 0.93302 1.11073 0.90592 0.85539 0.83238 0.93408 0.90178 0.83955 0.90278 0.92277 0.91405 0.93907 0.91008 0.88487 0.84222 0.71144 0.93161 0.88641 0.90507 0.92326 0.85079 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.81 13.96 21.61 0.30 -55.51 16 2 C 0.01 0.55 5.49 84.83 0.47 1.02 16 3 Si 0.97 46.16 28.62 68.60 1.96 48.12 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.40 -23.98 9.95 67.92 0.68 -23.31 16 8 H 0.08 5.02 5.44 -2.91 -0.02 5.01 16 9 O -0.25 -13.68 8.59 -22.72 -0.20 -13.87 16 10 C 0.12 5.68 6.65 22.58 0.15 5.83 16 11 C -0.19 -7.46 9.99 22.39 0.22 -7.23 16 12 C -0.06 -1.89 9.69 22.25 0.22 -1.68 16 13 C -0.15 -4.39 5.40 -19.83 -0.11 -4.50 16 14 C 0.12 2.62 5.61 85.56 0.48 3.10 16 15 N -0.69 -14.07 6.24 -495.20 -3.09 -17.16 16 16 C 0.09 1.46 2.53 44.99 0.11 1.57 16 17 C -0.14 -2.21 5.35 30.64 0.16 -2.05 16 18 C 0.06 0.86 5.11 86.33 0.44 1.30 16 19 N -0.54 -7.21 4.40 -900.92 -3.96 -11.17 16 20 C 0.06 0.52 5.56 85.56 0.48 1.00 16 21 C 0.48 6.14 8.00 71.24 0.57 6.71 16 22 O -0.54 -11.38 15.08 21.97 0.33 -11.05 16 23 O -0.52 -3.94 13.42 -51.34 -0.69 -4.63 16 24 C 0.06 0.67 5.46 86.32 0.47 1.14 16 25 C -0.10 -1.50 5.70 30.65 0.17 -1.32 16 26 C -0.05 -1.90 9.69 22.25 0.22 -1.68 16 27 C -0.24 -10.73 9.17 22.39 0.21 -10.53 16 28 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.05 0.90 7.45 -2.39 -0.02 0.88 16 32 H 0.08 1.64 8.00 -2.38 -0.02 1.62 16 33 H 0.34 7.30 8.44 -89.70 -0.76 6.54 16 34 H 0.08 1.20 7.80 -2.39 -0.02 1.18 16 35 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.07 1.06 7.54 -2.39 -0.02 1.04 16 37 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.07 1.33 5.78 -2.39 -0.01 1.31 16 39 H 0.10 0.45 8.12 -2.38 -0.02 0.43 16 40 H 0.14 0.57 7.99 -2.39 -0.02 0.55 16 41 H 0.43 0.28 9.10 -74.06 -0.67 -0.39 16 42 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.10 0.72 8.02 -2.38 -0.02 0.70 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 47 H 0.11 5.26 5.64 -2.91 -0.02 5.24 16 Total: -1.00 -74.23 383.46 -0.83 -75.06 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.43 Total: 20.86 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 4.94 Total: -30.65 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -6.75 Total: -83.84 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.55 Total: -29.56 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.96 Total: 48.12 kcal Total: -74.23 -0.83 -75.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.910 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.97 seconds