Wall clock time and date at job start Wed Apr 1 2020 00:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48496 * 109.47496 * 270.00244 * 3 2 1 5 5 H 1.48505 * 109.47115 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.47275 * 150.00312 * 3 2 1 7 7 C 1.38813 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00061 * 163.07144 * 7 2 1 9 9 N 1.36937 * 119.99979 * 343.07215 * 7 2 1 10 10 C 1.46924 * 120.63063 * 331.84880 * 9 7 2 11 11 C 1.53191 * 108.77392 * 233.58593 * 10 9 7 12 12 C 1.53034 * 109.31244 * 305.36449 * 11 10 9 13 13 N 1.46905 * 109.45843 * 181.38872 * 12 11 10 14 14 C 1.46904 * 110.99834 * 155.00253 * 13 12 11 15 15 C 1.50704 * 109.46726 * 179.97438 * 14 13 12 16 16 C 1.38165 * 120.02834 * 260.01643 * 15 14 13 17 17 C 1.38246 * 120.05613 * 179.97438 * 16 15 14 18 18 C 1.38283 * 120.11153 * 0.02562 * 17 16 15 19 19 C 1.38125 * 120.05660 * 359.97438 * 18 17 16 20 20 C 1.38714 * 120.02988 * 79.99773 * 15 14 13 21 21 O 1.35906 * 120.05021 * 359.97438 * 20 15 14 22 22 C 1.42901 * 116.99618 * 180.02562 * 21 20 15 23 23 C 1.50695 * 109.47411 * 180.02562 * 22 21 20 24 24 O 1.20827 * 119.99588 * 359.97438 * 23 22 21 25 25 O 1.34225 * 120.00433 * 179.97438 * 23 22 21 26 26 C 1.53041 * 109.53946 * 61.36538 * 12 11 10 27 27 C 1.46925 * 120.62870 * 151.82613 * 9 7 2 28 28 H 0.97002 * 119.99621 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58864 * 113.79612 * 10 9 7 30 30 H 1.09006 * 109.70359 * 353.44318 * 10 9 7 31 31 H 1.08997 * 109.49696 * 185.41191 * 11 10 9 32 32 H 1.09000 * 109.49788 * 65.31821 * 11 10 9 33 33 H 1.08998 * 109.45914 * 301.35315 * 12 11 10 34 34 H 1.00889 * 111.00257 * 31.04353 * 13 12 11 35 35 H 1.08997 * 109.47571 * 59.99672 * 14 13 12 36 36 H 1.08995 * 109.46690 * 299.99435 * 14 13 12 37 37 H 1.08002 * 119.96785 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.93928 * 180.02562 * 17 16 15 39 39 H 1.07999 * 119.97257 * 180.28189 * 18 17 16 40 40 H 1.08001 * 120.02656 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47013 * 300.00180 * 22 21 20 42 42 H 1.09002 * 109.47376 * 59.99446 * 22 21 20 43 43 H 0.96702 * 117.00311 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.49463 * 58.58871 * 26 12 11 45 45 H 1.09002 * 109.49405 * 178.68253 * 26 12 11 46 46 H 1.09008 * 109.58321 * 246.20187 * 27 9 7 47 47 H 1.08992 * 109.58725 * 6.48246 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3442 10 6 0.2261 -2.3409 1.2659 11 6 0.4974 -3.3209 2.4116 12 6 0.8120 -4.7021 1.8325 13 7 1.0401 -5.6523 2.9293 14 6 0.7599 -7.0290 2.5000 15 6 1.0051 -7.9731 3.6487 16 6 2.1851 -8.6887 3.7158 17 6 2.4109 -9.5546 4.7697 18 6 1.4566 -9.7072 5.7588 19 6 0.2753 -8.9941 5.6963 20 6 0.0465 -8.1242 4.6399 21 8 -1.1146 -7.4207 4.5766 22 6 -2.0558 -7.6260 5.6321 23 6 -3.2725 -6.7693 5.3939 24 8 -3.3277 -6.0558 4.4204 25 8 -4.2948 -6.7989 6.2632 26 6 2.0674 -4.6180 0.9612 27 6 1.8139 -3.6527 -0.2009 28 1 -0.4850 0.8401 0.0004 29 1 -0.6770 -2.6410 0.7345 30 1 0.0967 -1.3359 1.6676 31 1 -0.3831 -3.3863 3.0507 32 1 1.3471 -2.9698 2.9971 33 1 -0.0282 -5.0417 1.2267 34 1 0.4914 -5.4076 3.7398 35 1 1.4147 -7.2908 1.6688 36 1 -0.2797 -7.1058 2.1817 37 1 2.9321 -8.5709 2.9447 38 1 3.3341 -10.1127 4.8204 39 1 1.6372 -10.3808 6.5834 40 1 -0.4695 -9.1133 6.4693 41 1 -2.3500 -8.6752 5.6576 42 1 -1.5996 -7.3534 6.5838 43 1 -5.0534 -6.2317 6.0683 44 1 2.9023 -4.2547 1.5604 45 1 2.3041 -5.6067 0.5680 46 1 1.0402 -4.0598 -0.8520 47 1 2.7332 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:06 Heat of formation + Delta-G solvation = -75.105647 kcal Electronic energy + Delta-G solvation = -28884.673757 eV Core-core repulsion = 24840.389109 eV Total energy + Delta-G solvation = -4044.284648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.99077 -40.13904 -38.01611 -37.61303 -36.42993 -35.14212 -32.71666 -31.22852 -30.62069 -29.87088 -29.26245 -28.60124 -25.52885 -24.02004 -23.37940 -22.13332 -21.70633 -21.36582 -20.95826 -18.99645 -18.76687 -17.90026 -17.28314 -17.06071 -16.70239 -16.05763 -15.82783 -15.37633 -14.87465 -14.75485 -14.57515 -14.36688 -13.96393 -13.82733 -13.40772 -13.34227 -13.01649 -12.88082 -12.83910 -12.27103 -12.19063 -11.99994 -11.92685 -11.62425 -11.49386 -11.25758 -11.14862 -10.92377 -10.78216 -10.62390 -10.58678 -10.23849 -10.08866 -9.84198 -9.47245 -9.37794 -9.06619 -8.45102 -8.37537 -7.98095 -6.56448 -5.69843 -3.11555 1.10478 1.19324 1.76297 1.90150 3.28590 3.43125 3.49736 3.51786 3.53044 4.34026 4.46575 4.53144 4.55748 4.57685 4.69774 4.76775 4.88871 5.10924 5.14196 5.39258 5.45459 5.51844 5.60303 5.63243 5.74500 5.83493 5.94747 6.04411 6.06265 6.10540 6.22441 6.28370 6.37326 6.48233 6.53491 6.62393 6.67423 6.77199 6.81264 6.94517 7.01572 7.16363 7.46031 7.49049 7.50498 7.76541 7.79680 7.88626 8.54819 9.30853 9.94977 10.52568 11.38794 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.002878 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.760311 B = 9727.078689 C =11464.071033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.139 4.139 12 C 0.097 3.903 13 N -0.680 5.680 14 C 0.104 3.896 15 C -0.095 4.095 16 C -0.063 4.063 17 C -0.153 4.153 18 C -0.085 4.085 19 C -0.210 4.210 20 C 0.129 3.871 21 O -0.292 6.292 22 C 0.070 3.930 23 C 0.477 3.523 24 O -0.480 6.480 25 O -0.514 6.514 26 C -0.116 4.116 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.338 0.662 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.420 0.580 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.014 0.986 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.490 -22.355 15.229 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.049 3.951 11 C -0.179 4.179 12 C -0.011 4.011 13 N -0.311 5.311 14 C -0.025 4.025 15 C -0.096 4.096 16 C -0.082 4.082 17 C -0.172 4.172 18 C -0.103 4.103 19 C -0.229 4.229 20 C 0.084 3.916 21 O -0.205 6.205 22 C -0.006 4.006 23 C 0.317 3.683 24 O -0.365 6.365 25 O -0.328 6.328 26 C -0.156 4.156 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.156 0.844 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.281 0.719 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.031 0.969 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.676 -22.137 14.737 26.728 hybrid contribution -1.190 1.066 0.150 1.604 sum -3.865 -21.071 14.887 26.088 Atomic orbital electron populations 1.70042 1.05260 1.25347 1.54232 1.25044 0.95268 0.98365 1.01147 0.86315 0.79189 0.83762 0.77632 1.21480 1.21635 1.20491 1.19185 0.92509 0.84874 1.41280 0.91771 1.44052 1.35869 1.01589 1.49977 1.20715 0.88573 0.97989 0.87845 1.22371 1.00047 0.95317 1.00156 1.21453 0.96686 0.91741 0.91268 1.60737 1.61459 1.00454 1.08445 1.20751 0.99620 0.88099 0.94059 1.19298 0.93256 1.00415 0.96679 1.20958 0.95127 0.94123 0.97983 1.21094 0.99935 1.00715 0.95417 1.20895 0.92947 0.98137 0.98349 1.21171 1.00520 1.01606 0.99587 1.18812 0.85335 0.92385 0.95057 1.86103 1.25759 1.63212 1.45459 1.21768 0.86991 0.99654 0.92204 1.22613 0.83909 0.81322 0.80479 1.90860 1.79489 1.37781 1.28378 1.84398 1.29559 1.66413 1.52475 1.21998 0.97425 0.98320 0.97812 1.20922 0.97413 0.86955 0.92923 0.93743 0.96636 0.89462 0.93636 0.92021 0.94652 0.84393 0.90338 0.94138 0.84973 0.85807 0.85836 0.85529 0.87712 0.87530 0.71941 0.91829 0.93669 0.96852 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 11.19 55.49 0.62 -26.57 16 2 C 0.00 0.00 4.92 -17.43 -0.09 -0.09 16 3 Si 0.90 22.34 29.59 -169.99 -5.03 17.31 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -7.11 9.58 -15.06 -0.14 -7.26 16 8 H 0.06 1.80 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -15.67 2.99 -172.32 -0.52 -16.18 16 10 C 0.18 4.46 5.30 -3.71 -0.02 4.44 16 11 C -0.14 -2.93 5.36 -26.61 -0.14 -3.08 16 12 C 0.10 1.84 2.46 -67.67 -0.17 1.67 16 13 N -0.68 -11.08 6.30 -107.95 -0.68 -11.76 16 14 C 0.10 1.46 5.27 -4.97 -0.03 1.44 16 15 C -0.10 -1.17 5.41 -104.47 -0.56 -1.73 16 16 C -0.06 -0.66 9.66 -39.61 -0.38 -1.05 16 17 C -0.15 -1.35 10.04 -39.56 -0.40 -1.74 16 18 C -0.08 -0.69 10.04 -39.61 -0.40 -1.08 16 19 C -0.21 -1.81 9.04 -39.43 -0.36 -2.17 16 20 C 0.13 1.45 6.66 -39.22 -0.26 1.19 16 21 O -0.29 -3.44 8.85 -39.40 -0.35 -3.79 16 22 C 0.07 0.54 5.33 36.00 0.19 0.74 16 23 C 0.48 4.58 8.40 36.00 0.30 4.88 16 24 O -0.48 -7.02 17.26 -25.48 -0.44 -7.46 16 25 O -0.51 -3.22 13.42 -39.24 -0.53 -3.75 16 26 C -0.12 -2.22 5.59 -26.61 -0.15 -2.37 16 27 C 0.14 3.24 6.52 -3.71 -0.02 3.22 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 2.46 6.07 -51.93 -0.31 2.14 16 31 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.04 0.71 7.80 -51.93 -0.40 0.30 16 34 H 0.34 5.60 8.27 -39.30 -0.32 5.28 16 35 H 0.08 1.06 7.27 -51.93 -0.38 0.68 16 36 H 0.04 0.62 7.77 -51.93 -0.40 0.22 16 37 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16 41 H 0.11 0.53 7.66 -51.93 -0.40 0.13 16 42 H 0.11 0.58 7.66 -51.93 -0.40 0.18 16 43 H 0.42 1.11 9.10 45.56 0.41 1.53 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.04 0.76 7.42 -51.93 -0.39 0.38 16 46 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 47 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -35.29 384.77 -10.01 -45.30 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.26 Total: 4.09 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.62 Total: -2.99 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.57 Total: -54.51 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.32 Total: -15.00 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.29 -10.01 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.810 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds