Wall clock time and date at job start Wed Apr 1 2020 00:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48496 * 109.47496 * 270.00244 * 3 2 1 5 5 H 1.48505 * 109.47115 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.47275 * 150.00312 * 3 2 1 7 7 C 1.38813 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00061 * 163.07144 * 7 2 1 9 9 N 1.36937 * 119.99979 * 343.07215 * 7 2 1 10 10 C 1.46924 * 120.63063 * 331.84880 * 9 7 2 11 11 C 1.53191 * 108.77392 * 233.58593 * 10 9 7 12 12 C 1.53034 * 109.31244 * 305.36449 * 11 10 9 13 13 N 1.46905 * 109.45843 * 181.38872 * 12 11 10 14 14 C 1.46904 * 110.99834 * 155.00253 * 13 12 11 15 15 C 1.50704 * 109.46726 * 179.97438 * 14 13 12 16 16 C 1.38165 * 120.02834 * 260.01643 * 15 14 13 17 17 C 1.38246 * 120.05613 * 179.97438 * 16 15 14 18 18 C 1.38283 * 120.11153 * 0.02562 * 17 16 15 19 19 C 1.38125 * 120.05660 * 359.97438 * 18 17 16 20 20 C 1.38714 * 120.02988 * 79.99773 * 15 14 13 21 21 O 1.35906 * 120.05021 * 359.97438 * 20 15 14 22 22 C 1.42901 * 116.99618 * 180.02562 * 21 20 15 23 23 C 1.50695 * 109.47411 * 180.02562 * 22 21 20 24 24 O 1.20827 * 119.99588 * 359.97438 * 23 22 21 25 25 O 1.34225 * 120.00433 * 179.97438 * 23 22 21 26 26 C 1.53041 * 109.53946 * 61.36538 * 12 11 10 27 27 C 1.46925 * 120.62870 * 151.82613 * 9 7 2 28 28 H 0.97002 * 119.99621 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.58864 * 113.79612 * 10 9 7 30 30 H 1.09006 * 109.70359 * 353.44318 * 10 9 7 31 31 H 1.08997 * 109.49696 * 185.41191 * 11 10 9 32 32 H 1.09000 * 109.49788 * 65.31821 * 11 10 9 33 33 H 1.08998 * 109.45914 * 301.35315 * 12 11 10 34 34 H 1.00889 * 111.00257 * 31.04353 * 13 12 11 35 35 H 1.08997 * 109.47571 * 59.99672 * 14 13 12 36 36 H 1.08995 * 109.46690 * 299.99435 * 14 13 12 37 37 H 1.08002 * 119.96785 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.93928 * 180.02562 * 17 16 15 39 39 H 1.07999 * 119.97257 * 180.28189 * 18 17 16 40 40 H 1.08001 * 120.02656 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47013 * 300.00180 * 22 21 20 42 42 H 1.09002 * 109.47376 * 59.99446 * 22 21 20 43 43 H 0.96702 * 117.00311 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.49463 * 58.58871 * 26 12 11 45 45 H 1.09002 * 109.49405 * 178.68253 * 26 12 11 46 46 H 1.09008 * 109.58321 * 246.20187 * 27 9 7 47 47 H 1.08992 * 109.58725 * 6.48246 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3442 10 6 0.2261 -2.3409 1.2659 11 6 0.4974 -3.3209 2.4116 12 6 0.8120 -4.7021 1.8325 13 7 1.0401 -5.6523 2.9293 14 6 0.7599 -7.0290 2.5000 15 6 1.0051 -7.9731 3.6487 16 6 2.1851 -8.6887 3.7158 17 6 2.4109 -9.5546 4.7697 18 6 1.4566 -9.7072 5.7588 19 6 0.2753 -8.9941 5.6963 20 6 0.0465 -8.1242 4.6399 21 8 -1.1146 -7.4207 4.5766 22 6 -2.0558 -7.6260 5.6321 23 6 -3.2725 -6.7693 5.3939 24 8 -3.3277 -6.0558 4.4204 25 8 -4.2948 -6.7989 6.2632 26 6 2.0674 -4.6180 0.9612 27 6 1.8139 -3.6527 -0.2009 28 1 -0.4850 0.8401 0.0004 29 1 -0.6770 -2.6410 0.7345 30 1 0.0967 -1.3359 1.6676 31 1 -0.3831 -3.3863 3.0507 32 1 1.3471 -2.9698 2.9971 33 1 -0.0282 -5.0417 1.2267 34 1 0.4914 -5.4076 3.7398 35 1 1.4147 -7.2908 1.6688 36 1 -0.2797 -7.1058 2.1817 37 1 2.9321 -8.5709 2.9447 38 1 3.3341 -10.1127 4.8204 39 1 1.6372 -10.3808 6.5834 40 1 -0.4695 -9.1133 6.4693 41 1 -2.3500 -8.6752 5.6576 42 1 -1.5996 -7.3534 6.5838 43 1 -5.0534 -6.2317 6.0683 44 1 2.9023 -4.2547 1.5604 45 1 2.3041 -5.6067 0.5680 46 1 1.0402 -4.0598 -0.8520 47 1 2.7332 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:00 Heat of formation + Delta-G solvation = -99.245697 kcal Electronic energy + Delta-G solvation = -28885.720548 eV Core-core repulsion = 24840.389109 eV Total energy + Delta-G solvation = -4045.331439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.28 seconds Orbital eigenvalues (eV) -41.71608 -40.88660 -39.59132 -38.43595 -37.15738 -36.69862 -34.34230 -32.73106 -31.60154 -31.28417 -30.62955 -29.58915 -27.07581 -25.61266 -24.11857 -23.79866 -23.02267 -22.31728 -22.06050 -20.74230 -19.51994 -18.76497 -18.55363 -17.99276 -17.72854 -17.05992 -16.87935 -16.54743 -16.21124 -15.94353 -15.75482 -15.58976 -15.34449 -15.24576 -14.85947 -14.63292 -14.52286 -13.90052 -13.76370 -13.55717 -13.50341 -13.26017 -13.10315 -12.94665 -12.69240 -12.56302 -12.42549 -12.36111 -12.14380 -12.11759 -11.98830 -11.88861 -11.78328 -11.56829 -11.25950 -11.17237 -10.55422 -9.82830 -9.39465 -9.11168 -8.70679 -7.88299 -5.34387 0.39987 0.50529 1.04667 1.30854 1.45813 1.47530 1.58101 2.51056 2.65500 2.78546 3.24275 3.38796 3.67131 3.77004 3.88917 3.92055 4.00054 4.01187 4.09755 4.14182 4.23679 4.40405 4.42625 4.46506 4.51926 4.59897 4.68356 4.68514 4.82771 4.86441 4.95485 5.02258 5.06922 5.12181 5.22252 5.36597 5.37216 5.49125 5.49880 5.55383 5.62969 5.66423 5.69091 5.87002 6.09950 6.35066 6.37970 6.42670 6.86151 7.12758 7.83777 8.37398 9.18774 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.002878 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.760311 B = 9727.078689 C =11464.071033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.971 3.029 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.184 3.816 11 C -0.124 4.124 12 C 0.107 3.893 13 N -0.672 5.672 14 C 0.110 3.890 15 C -0.125 4.125 16 C -0.073 4.073 17 C -0.157 4.157 18 C -0.080 4.080 19 C -0.207 4.207 20 C 0.116 3.884 21 O -0.324 6.324 22 C 0.064 3.936 23 C 0.483 3.517 24 O -0.543 6.543 25 O -0.500 6.500 26 C -0.100 4.100 27 C 0.141 3.859 28 H 0.250 0.750 29 H -0.011 1.011 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.337 0.663 35 H 0.082 0.918 36 H 0.021 0.979 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.435 0.565 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.009 0.991 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -24.655 17.540 30.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.334 5.334 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.002 4.002 13 N -0.302 5.302 14 C -0.018 4.018 15 C -0.126 4.126 16 C -0.092 4.092 17 C -0.175 4.175 18 C -0.098 4.098 19 C -0.226 4.226 20 C 0.071 3.929 21 O -0.238 6.238 22 C -0.011 4.011 23 C 0.326 3.674 24 O -0.433 6.433 25 O -0.315 6.315 26 C -0.140 4.140 27 C 0.015 3.985 28 H 0.059 0.941 29 H 0.007 0.993 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.176 0.824 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.298 0.702 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.027 0.973 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.352 -24.484 17.078 29.883 hybrid contribution -1.675 1.670 -0.505 2.419 sum -3.028 -22.814 16.573 28.361 Atomic orbital electron populations 1.70210 1.06850 1.25883 1.55476 1.25878 0.96077 1.01750 1.01186 0.85224 0.78047 0.79191 0.77670 1.20908 1.21834 1.19390 1.19550 0.92918 0.85983 1.40952 0.91379 1.44321 1.35836 1.02577 1.50629 1.20469 0.87695 0.97328 0.88753 1.22120 1.00183 0.95629 0.98388 1.21222 0.96108 0.91074 0.91838 1.60716 1.61144 1.01127 1.07245 1.20681 0.98492 0.87204 0.95470 1.19229 0.94948 1.01477 0.96955 1.21098 0.94656 0.94484 0.98927 1.21409 1.01068 1.00162 0.94837 1.21342 0.92167 0.97670 0.98658 1.21528 1.01463 1.00340 0.99228 1.18974 0.85067 0.93116 0.95705 1.86055 1.26546 1.63925 1.47290 1.22139 0.85772 1.00991 0.92226 1.23104 0.84620 0.80188 0.79489 1.90845 1.80796 1.40616 1.31041 1.84377 1.29569 1.66389 1.51179 1.21800 0.97003 0.98761 0.96408 1.21082 0.97270 0.85985 0.94178 0.94116 0.99263 0.92625 0.92799 0.92422 0.96075 0.84541 0.89933 0.96067 0.84606 0.83594 0.82687 0.82418 0.84489 0.84730 0.70168 0.92417 0.90748 0.97329 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 11.19 21.65 0.24 -58.09 16 2 C -0.05 -3.16 4.92 84.86 0.42 -2.74 16 3 Si 0.97 46.63 29.59 68.60 2.03 48.66 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.26 -15.35 9.58 84.03 0.81 -14.54 16 8 H 0.07 3.83 7.89 -2.91 -0.02 3.80 16 9 N -0.61 -33.14 2.99 -699.11 -2.09 -35.24 16 10 C 0.18 9.81 5.30 86.36 0.46 10.27 16 11 C -0.12 -5.36 5.36 30.67 0.16 -5.19 16 12 C 0.11 4.10 2.46 44.94 0.11 4.21 16 13 N -0.67 -21.85 6.30 -495.43 -3.12 -24.97 16 14 C 0.11 3.12 5.27 85.56 0.45 3.57 16 15 C -0.13 -2.95 5.41 -19.77 -0.11 -3.06 16 16 C -0.07 -1.41 9.66 22.25 0.22 -1.20 16 17 C -0.16 -2.27 10.04 22.28 0.22 -2.04 16 18 C -0.08 -0.98 10.04 22.25 0.22 -0.75 16 19 C -0.21 -2.85 9.04 22.36 0.20 -2.65 16 20 C 0.12 2.42 6.66 22.51 0.15 2.57 16 21 O -0.32 -7.41 8.85 -73.41 -0.65 -8.06 16 22 C 0.06 0.86 5.33 71.23 0.38 1.24 16 23 C 0.48 8.96 8.40 71.23 0.60 9.56 16 24 O -0.54 -16.50 17.26 28.39 0.49 -16.01 16 25 O -0.50 -5.47 13.42 -51.37 -0.69 -6.16 16 26 C -0.10 -3.79 5.59 30.67 0.17 -3.62 16 27 C 0.14 6.36 6.52 86.36 0.56 6.92 16 28 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.06 3.29 6.07 -2.38 -0.01 3.28 16 31 H 0.05 2.21 8.10 -2.39 -0.02 2.19 16 32 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.02 0.88 7.80 -2.39 -0.02 0.86 16 34 H 0.34 11.24 8.27 -89.70 -0.74 10.50 16 35 H 0.08 2.20 7.27 -2.39 -0.02 2.18 16 36 H 0.02 0.68 7.77 -2.39 -0.02 0.66 16 37 H 0.14 2.37 8.04 -2.91 -0.02 2.35 16 38 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.16 1.06 6.30 -2.91 -0.02 1.04 16 41 H 0.14 0.91 7.66 -2.39 -0.02 0.90 16 42 H 0.14 1.02 7.66 -2.39 -0.02 1.00 16 43 H 0.44 1.84 9.10 -74.06 -0.67 1.16 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.07 2.39 7.42 -2.39 -0.02 2.38 16 46 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 47 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 Total: -1.00 -79.77 384.77 0.82 -78.95 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.42 Total: 18.37 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.03 Total: 2.55 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.97 Total: -118.30 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.85 Total: -30.23 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -79.77 0.82 -78.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.300 kcal (2) G-P(sol) polarization free energy of solvation -79.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.28 seconds