Wall clock time and date at job start Tue Mar 31 2020 23:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46739 * 55.00050 * 12 11 10 14 14 N 1.46895 * 109.47375 * 295.00374 * 12 11 10 15 15 C 1.50703 * 109.47152 * 175.00085 * 12 11 10 16 16 O 1.21276 * 119.99979 * 100.00242 * 15 12 11 17 17 N 1.34779 * 120.00055 * 279.99928 * 15 12 11 18 18 C 1.46495 * 119.99997 * 180.02562 * 17 15 12 19 19 C 1.53007 * 109.47048 * 180.02562 * 18 17 15 20 20 H 1.08994 * 109.47301 * 54.99724 * 19 18 17 21 21 C 1.50695 * 109.46882 * 294.99753 * 19 18 17 22 22 O 1.20833 * 119.99932 * 0.02562 * 21 19 18 23 23 O 1.34229 * 120.00124 * 179.97438 * 21 19 18 24 24 C 1.50696 * 109.46745 * 175.00178 * 19 18 17 25 25 C 1.38237 * 120.00398 * 59.72634 * 24 19 18 26 26 C 1.38238 * 119.99885 * 179.78653 * 25 24 19 27 27 C 1.38233 * 119.99873 * 0.43854 * 26 25 24 28 28 C 1.38240 * 120.00299 * 359.81341 * 27 26 25 29 29 C 1.38233 * 119.99936 * 359.97438 * 28 27 26 30 30 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 32 32 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 33 33 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 34 34 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 35 35 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 37 37 H 1.00905 * 111.00436 * 176.04302 * 14 12 11 38 38 H 1.00905 * 110.99912 * 299.99773 * 14 12 11 39 39 H 0.97000 * 119.99464 * 0.02562 * 17 15 12 40 40 H 1.08997 * 109.47210 * 300.00124 * 18 17 15 41 41 H 1.09001 * 109.47390 * 60.00175 * 18 17 15 42 42 H 0.96697 * 116.99831 * 179.97438 * 23 21 19 43 43 H 1.07995 * 119.99725 * 359.97438 * 25 24 19 44 44 H 1.07999 * 119.99454 * 180.27519 * 26 25 24 45 45 H 1.08001 * 119.99712 * 179.83360 * 27 26 25 46 46 H 1.07998 * 120.00040 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.00205 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0434 0.8401 14 7 3.2378 -6.1411 -1.2570 15 6 1.7254 -7.4517 0.1214 16 8 1.5131 -8.1248 -0.8648 17 7 1.2911 -7.8677 1.3275 18 6 0.5632 -9.1334 1.4473 19 6 0.1864 -9.3684 2.9115 20 1 -0.3706 -8.5095 3.2857 21 6 1.4389 -9.5499 3.7296 22 8 2.5219 -9.4963 3.1963 23 8 1.3516 -9.7701 5.0508 24 6 -0.6669 -10.6059 3.0181 25 6 -0.1717 -11.8255 2.5960 26 6 -0.9530 -12.9614 2.6979 27 6 -2.2327 -12.8761 3.2136 28 6 -2.7298 -11.6555 3.6309 29 6 -1.9470 -10.5204 3.5331 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6248 -2.5571 0.8896 33 1 2.8721 -3.6042 -0.8905 34 1 2.8721 -3.6043 0.8895 35 1 0.8535 -5.0450 0.8885 36 1 0.8542 -5.0446 -0.8914 37 1 3.9456 -6.8603 -1.2550 38 1 2.6255 -6.2385 -2.0531 39 1 1.4607 -7.3291 2.1162 40 1 -0.3422 -9.0905 0.8419 41 1 1.1950 -9.9504 1.0988 42 1 2.1823 -9.8807 5.5332 43 1 0.8266 -11.8914 2.1894 44 1 -0.5644 -13.9150 2.3722 45 1 -2.8440 -13.7630 3.2907 46 1 -3.7298 -11.5888 4.0334 47 1 -2.3355 -9.5668 3.8587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:51 Heat of formation + Delta-G solvation = -125.086176 kcal Electronic energy + Delta-G solvation = -27935.160423 eV Core-core repulsion = 23888.708456 eV Total energy + Delta-G solvation = -4046.451967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22992 -39.79346 -39.46391 -36.77729 -35.88274 -35.38861 -33.32332 -33.21865 -31.38521 -31.31504 -29.35159 -27.86276 -25.96795 -24.39551 -23.24929 -22.90043 -22.15820 -20.93251 -20.08672 -19.96067 -18.56833 -17.61838 -17.38509 -16.90767 -16.59597 -16.31679 -16.03368 -15.56667 -15.32056 -15.08667 -14.87868 -14.42342 -14.33273 -13.91977 -13.89508 -13.67774 -13.40374 -13.22647 -12.96740 -12.69529 -12.40674 -12.26089 -11.95418 -11.74798 -11.68029 -11.48369 -11.43741 -11.11947 -10.99399 -10.74121 -10.57636 -10.39625 -10.17883 -9.58390 -9.38419 -9.28333 -9.23364 -9.18119 -9.00486 -8.51975 -8.28323 -5.93997 -3.95293 0.77650 0.94093 1.72958 2.51479 2.63781 3.01570 3.31760 3.34957 3.42329 3.47329 4.04637 4.17856 4.32389 4.51241 4.53813 4.64267 4.65832 4.68636 4.82333 4.91003 5.01578 5.08424 5.23627 5.33790 5.41860 5.43465 5.45994 5.48370 5.56542 5.96652 5.97343 6.02738 6.04925 6.06451 6.15585 6.23495 6.47443 6.49593 6.85399 7.04324 7.13355 7.27371 7.39515 7.43985 7.57283 7.77116 7.92603 8.07994 8.15098 8.51648 9.12670 9.68410 11.17499 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.002067 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.329695 B =13540.508111 C =13987.412424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.078 3.922 13 H 0.100 0.900 14 N -0.811 5.811 15 C 0.487 3.513 16 O -0.550 6.550 17 N -0.724 5.724 18 C 0.138 3.862 19 C -0.051 4.051 20 H 0.126 0.874 21 C 0.483 3.517 22 O -0.498 6.498 23 O -0.510 6.510 24 C -0.081 4.081 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.113 4.113 28 C -0.117 4.117 29 C -0.097 4.097 30 H 0.258 0.742 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.338 0.662 38 H 0.350 0.650 39 H 0.401 0.599 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.412 0.588 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 -28.331 11.057 30.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.038 4.038 13 H 0.118 0.882 14 N -0.339 5.339 15 C 0.273 3.727 16 O -0.428 6.428 17 N -0.377 5.377 18 C 0.014 3.986 19 C -0.071 4.071 20 H 0.144 0.856 21 C 0.324 3.676 22 O -0.385 6.385 23 O -0.322 6.322 24 C -0.082 4.082 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.131 4.131 28 C -0.135 4.135 29 C -0.115 4.115 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.235 0.765 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.113 -27.887 10.163 29.844 hybrid contribution 0.586 0.050 0.716 0.927 sum -2.527 -27.837 10.879 29.994 Atomic orbital electron populations 1.69975 1.06039 1.26327 1.51423 1.25037 0.94841 0.99237 0.95553 0.86561 0.80200 0.83917 0.77469 1.19716 1.21094 1.21139 1.21328 0.93132 0.91096 1.49750 0.92599 1.19128 0.94114 0.91659 0.96907 1.21542 0.98770 0.92299 1.01191 1.21648 0.96524 0.94049 1.01907 1.21756 0.95849 0.90772 0.95380 0.88209 1.59046 1.17327 1.54272 1.03270 1.22500 0.78865 0.88921 0.82430 1.90666 1.57499 1.57564 1.37035 1.46004 1.58321 1.22845 1.10486 1.21200 0.97686 0.87859 0.91840 1.20286 0.92315 0.99505 0.94959 0.85576 1.23157 0.91056 0.72408 0.81009 1.90802 1.29851 1.45715 1.72144 1.84539 1.42333 1.83337 1.21965 1.19138 0.94742 0.92769 1.01563 1.21067 1.00184 0.92222 0.99194 1.21141 0.94466 0.98362 0.99474 1.21253 0.95744 0.97952 0.98169 1.21183 1.00005 0.92524 0.99831 1.21087 0.93036 0.99225 0.98169 0.93192 0.96762 0.96990 0.91805 0.93697 0.91994 0.91888 0.84977 0.83614 0.76473 0.89641 0.90437 0.72905 0.86016 0.85710 0.85797 0.85536 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -2.07 5.04 -26.73 -0.13 -2.21 16 11 C -0.10 -1.72 4.84 -26.73 -0.13 -1.85 16 12 C 0.08 1.12 3.15 -68.87 -0.22 0.90 16 13 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 14 N -0.81 -11.66 8.44 -5.65 -0.05 -11.71 16 15 C 0.49 6.93 7.07 -10.98 -0.08 6.85 16 16 O -0.55 -9.40 16.25 5.56 0.09 -9.31 16 17 N -0.72 -8.19 4.81 -60.29 -0.29 -8.48 16 18 C 0.14 1.38 4.36 -4.04 -0.02 1.37 16 19 C -0.05 -0.39 2.52 -92.92 -0.23 -0.63 16 20 H 0.13 0.75 7.88 -51.93 -0.41 0.34 16 21 C 0.48 4.11 6.93 36.00 0.25 4.36 16 22 O -0.50 -5.70 16.05 -18.76 -0.30 -6.00 16 23 O -0.51 -3.33 13.34 -39.25 -0.52 -3.85 16 24 C -0.08 -0.62 4.71 -104.62 -0.49 -1.11 16 25 C -0.11 -0.84 8.87 -39.58 -0.35 -1.19 16 26 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 27 C -0.11 -0.69 10.05 -39.58 -0.40 -1.09 16 28 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 29 C -0.10 -0.66 9.67 -39.58 -0.38 -1.04 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 1.37 7.75 -51.93 -0.40 0.96 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.34 4.33 9.06 -39.29 -0.36 3.97 16 38 H 0.35 5.17 8.58 -39.29 -0.34 4.83 16 39 H 0.40 3.91 8.15 -40.82 -0.33 3.58 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.88 7.37 -51.93 -0.38 0.49 16 42 H 0.41 1.13 9.10 45.56 0.41 1.54 16 43 H 0.12 0.94 7.62 -52.49 -0.40 0.54 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 46 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.13 0.66 7.95 -52.49 -0.42 0.24 16 LS Contribution 400.56 15.07 6.04 6.04 Total: -1.00 -36.19 400.56 -9.24 -45.43 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.39 Total: 8.76 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -3.53 Total: -11.25 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.40 Total: -46.79 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.73 Total: -19.16 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.19 -9.24 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.656 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds