Wall clock time and date at job start Tue Mar 31 2020 23:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46739 * 55.00050 * 12 11 10 14 14 N 1.46895 * 109.47375 * 295.00374 * 12 11 10 15 15 C 1.50703 * 109.47152 * 175.00085 * 12 11 10 16 16 O 1.21276 * 119.99979 * 100.00242 * 15 12 11 17 17 N 1.34779 * 120.00055 * 279.99928 * 15 12 11 18 18 C 1.46495 * 119.99997 * 180.02562 * 17 15 12 19 19 C 1.53007 * 109.47048 * 180.02562 * 18 17 15 20 20 H 1.08994 * 109.47301 * 54.99724 * 19 18 17 21 21 C 1.50695 * 109.46882 * 294.99753 * 19 18 17 22 22 O 1.20833 * 119.99932 * 0.02562 * 21 19 18 23 23 O 1.34229 * 120.00124 * 179.97438 * 21 19 18 24 24 C 1.50696 * 109.46745 * 175.00178 * 19 18 17 25 25 C 1.38237 * 120.00398 * 59.72634 * 24 19 18 26 26 C 1.38238 * 119.99885 * 179.78653 * 25 24 19 27 27 C 1.38233 * 119.99873 * 0.43854 * 26 25 24 28 28 C 1.38240 * 120.00299 * 359.81341 * 27 26 25 29 29 C 1.38233 * 119.99936 * 359.97438 * 28 27 26 30 30 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 32 32 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 33 33 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 34 34 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 35 35 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 37 37 H 1.00905 * 111.00436 * 176.04302 * 14 12 11 38 38 H 1.00905 * 110.99912 * 299.99773 * 14 12 11 39 39 H 0.97000 * 119.99464 * 0.02562 * 17 15 12 40 40 H 1.08997 * 109.47210 * 300.00124 * 18 17 15 41 41 H 1.09001 * 109.47390 * 60.00175 * 18 17 15 42 42 H 0.96697 * 116.99831 * 179.97438 * 23 21 19 43 43 H 1.07995 * 119.99725 * 359.97438 * 25 24 19 44 44 H 1.07999 * 119.99454 * 180.27519 * 26 25 24 45 45 H 1.08001 * 119.99712 * 179.83360 * 27 26 25 46 46 H 1.07998 * 120.00040 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.00205 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0434 0.8401 14 7 3.2378 -6.1411 -1.2570 15 6 1.7254 -7.4517 0.1214 16 8 1.5131 -8.1248 -0.8648 17 7 1.2911 -7.8677 1.3275 18 6 0.5632 -9.1334 1.4473 19 6 0.1864 -9.3684 2.9115 20 1 -0.3706 -8.5095 3.2857 21 6 1.4389 -9.5499 3.7296 22 8 2.5219 -9.4963 3.1963 23 8 1.3516 -9.7701 5.0508 24 6 -0.6669 -10.6059 3.0181 25 6 -0.1717 -11.8255 2.5960 26 6 -0.9530 -12.9614 2.6979 27 6 -2.2327 -12.8761 3.2136 28 6 -2.7298 -11.6555 3.6309 29 6 -1.9470 -10.5204 3.5331 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6248 -2.5571 0.8896 33 1 2.8721 -3.6042 -0.8905 34 1 2.8721 -3.6043 0.8895 35 1 0.8535 -5.0450 0.8885 36 1 0.8542 -5.0446 -0.8914 37 1 3.9456 -6.8603 -1.2550 38 1 2.6255 -6.2385 -2.0531 39 1 1.4607 -7.3291 2.1162 40 1 -0.3422 -9.0905 0.8419 41 1 1.1950 -9.9504 1.0988 42 1 2.1823 -9.8807 5.5332 43 1 0.8266 -11.8914 2.1894 44 1 -0.5644 -13.9150 2.3722 45 1 -2.8440 -13.7630 3.2907 46 1 -3.7298 -11.5888 4.0334 47 1 -2.3355 -9.5668 3.8587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608179829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:45 Heat of formation + Delta-G solvation = -150.927508 kcal Electronic energy + Delta-G solvation = -27936.280987 eV Core-core repulsion = 23888.708456 eV Total energy + Delta-G solvation = -4047.572531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.36 seconds Orbital eigenvalues (eV) -41.92626 -40.87248 -39.98958 -37.50651 -37.10726 -36.38587 -35.22527 -33.99688 -33.11223 -31.86231 -30.13063 -29.37317 -27.18627 -25.74946 -24.00164 -23.74833 -23.18490 -21.78828 -21.63545 -21.03120 -19.20575 -18.43842 -18.40699 -18.17446 -17.69014 -17.47909 -16.97401 -16.57070 -16.46082 -16.08590 -15.79304 -15.67444 -15.46174 -15.10966 -14.60962 -14.53384 -14.28765 -14.24490 -13.95665 -13.92855 -13.62475 -13.40137 -13.09996 -12.98397 -12.83532 -12.59502 -12.49237 -12.34085 -12.22854 -12.15591 -11.97197 -11.66535 -11.53199 -11.37852 -11.21073 -10.95242 -10.51461 -10.21474 -9.87372 -9.82848 -9.67058 -8.16373 -6.26389 0.26705 0.44942 1.07717 1.41372 1.42213 1.48699 1.55703 1.96373 2.07683 2.44054 2.78999 3.16601 3.39970 3.50819 3.56754 3.76297 3.81176 4.01680 4.06240 4.13580 4.16709 4.26229 4.27118 4.48129 4.53044 4.54173 4.61911 4.70388 4.74337 4.94408 4.97252 5.10358 5.15130 5.25640 5.29627 5.35611 5.50189 5.51642 5.53563 5.59179 5.62192 5.85921 5.94968 6.02321 6.03501 6.31990 6.37039 6.47355 6.90108 6.91411 7.08481 7.42433 8.95560 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.002067 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.329695 B =13540.508111 C =13987.412424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.022 3.978 10 C -0.085 4.085 11 C -0.093 4.093 12 C 0.087 3.913 13 H 0.117 0.883 14 N -0.817 5.817 15 C 0.488 3.512 16 O -0.582 6.582 17 N -0.711 5.711 18 C 0.141 3.859 19 C -0.043 4.043 20 H 0.148 0.852 21 C 0.489 3.511 22 O -0.533 6.533 23 O -0.505 6.505 24 C -0.091 4.091 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.117 4.117 28 C -0.123 4.123 29 C -0.104 4.104 30 H 0.262 0.738 31 H -0.015 1.015 32 H -0.006 1.006 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.348 0.652 38 H 0.346 0.654 39 H 0.411 0.589 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.428 0.572 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 -28.601 12.535 31.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.077 0.923 9 C -0.015 4.015 10 C -0.122 4.122 11 C -0.131 4.131 12 C -0.029 4.029 13 H 0.135 0.865 14 N -0.346 5.346 15 C 0.274 3.726 16 O -0.462 6.462 17 N -0.363 5.363 18 C 0.017 3.983 19 C -0.062 4.062 20 H 0.165 0.835 21 C 0.332 3.668 22 O -0.422 6.422 23 O -0.319 6.319 24 C -0.092 4.092 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.135 4.135 28 C -0.141 4.141 29 C -0.122 4.122 30 H 0.071 0.929 31 H 0.004 0.996 32 H 0.012 0.988 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.247 0.753 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.290 0.710 43 H 0.131 0.869 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.007 -28.176 11.700 30.657 hybrid contribution 0.504 0.065 0.312 0.596 sum -2.503 -28.111 12.012 30.672 Atomic orbital electron populations 1.70100 1.07723 1.27557 1.52133 1.25982 0.95791 1.03323 0.94979 0.85423 0.79119 0.78924 0.77720 1.18656 1.20606 1.20236 1.21762 0.93540 0.92512 1.49801 0.92326 1.19053 0.94541 0.93342 0.94572 1.21291 0.97586 0.92205 1.01160 1.21461 0.96632 0.93075 1.01972 1.21613 0.95464 0.89799 0.96015 0.86510 1.59051 1.17551 1.54821 1.03197 1.22380 0.78751 0.88721 0.82773 1.90655 1.58811 1.58497 1.38243 1.45923 1.57226 1.23170 1.09982 1.21186 0.96911 0.86554 0.93675 1.20209 0.92250 1.00586 0.93203 0.83470 1.23235 0.90677 0.71432 0.81458 1.90793 1.31066 1.47514 1.72841 1.84500 1.43632 1.82675 1.21069 1.19156 0.95233 0.92424 1.02386 1.21144 1.00208 0.92993 0.99984 1.21379 0.94865 0.98644 0.99529 1.21566 0.95631 0.98895 0.97412 1.21509 1.00870 0.92321 0.99385 1.21343 0.92673 1.00300 0.97902 0.92884 0.99642 0.98759 0.92620 0.92764 0.90640 0.93257 0.83898 0.83992 0.75339 0.89926 0.91989 0.70966 0.86884 0.84459 0.83763 0.83526 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 3 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.08 -3.48 5.04 30.60 0.15 -3.32 16 11 C -0.09 -3.07 4.84 30.59 0.15 -2.92 16 12 C 0.09 2.39 3.15 44.17 0.14 2.53 16 13 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 14 N -0.82 -23.02 8.44 -171.80 -1.45 -24.47 16 15 C 0.49 13.60 7.07 87.66 0.62 14.22 16 16 O -0.58 -19.94 16.25 -3.02 -0.05 -19.98 16 17 N -0.71 -15.49 4.81 -463.06 -2.23 -17.72 16 18 C 0.14 2.77 4.36 86.38 0.38 3.15 16 19 C -0.04 -0.61 2.52 -12.29 -0.03 -0.64 16 20 H 0.15 1.44 7.88 -2.39 -0.02 1.42 16 21 C 0.49 7.84 6.93 71.23 0.49 8.34 16 22 O -0.53 -11.91 16.05 21.94 0.35 -11.56 16 23 O -0.51 -5.78 13.34 -51.41 -0.69 -6.47 16 24 C -0.09 -1.29 4.71 -19.86 -0.09 -1.39 16 25 C -0.13 -1.90 8.87 22.27 0.20 -1.71 16 26 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 27 C -0.12 -1.23 10.05 22.27 0.22 -1.01 16 28 C -0.12 -1.28 10.05 22.27 0.22 -1.05 16 29 C -0.10 -1.23 9.67 22.27 0.22 -1.01 16 30 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 31 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 32 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.35 8.63 9.06 -89.69 -0.81 7.82 16 38 H 0.35 10.24 8.58 -89.69 -0.77 9.47 16 39 H 0.41 7.38 8.15 -92.71 -0.76 6.62 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 1.44 7.37 -2.39 -0.02 1.42 16 42 H 0.43 1.65 9.10 -74.06 -0.67 0.98 16 43 H 0.11 1.83 7.62 -2.91 -0.02 1.81 16 44 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 46 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.14 1.15 7.95 -2.91 -0.02 1.13 16 Total: -1.00 -77.96 400.56 0.00 -77.96 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -1.99 Total: 28.00 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 3.73 Total: -15.52 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -3.39 Total: -99.39 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.38 Total: -38.01 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -77.96 0.00 -77.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.964 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.36 seconds