Wall clock time and date at job start Wed Apr 1 2020 00:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99908 * 2 1 4 4 H 1.48508 * 109.47042 * 239.99584 * 3 2 1 5 5 H 1.48499 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47350 * 119.99936 * 3 2 1 7 7 C 1.38807 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00442 * 205.14256 * 7 2 1 9 9 N 1.36936 * 120.00118 * 25.14355 * 7 2 1 10 10 C 1.46507 * 119.99659 * 8.06622 * 9 7 2 11 11 C 1.50699 * 109.46753 * 270.40006 * 10 9 7 12 12 O 1.20826 * 120.00437 * 0.02562 * 11 10 9 13 13 O 1.34235 * 119.99653 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00367 * 188.06046 * 9 7 2 15 15 C 1.50704 * 109.46936 * 90.00343 * 14 9 7 16 16 C 1.38242 * 119.99793 * 269.72698 * 15 14 9 17 17 C 1.38233 * 119.99444 * 179.74117 * 16 15 14 18 18 C 1.38230 * 120.00251 * 0.55462 * 17 16 15 19 19 C 1.50703 * 119.99826 * 179.71981 * 18 17 16 20 20 N 1.46900 * 109.47218 * 269.97531 * 19 18 17 21 21 C 1.47011 * 111.00299 * 293.63622 * 20 19 18 22 22 C 1.53089 * 109.25744 * 177.60749 * 21 20 19 23 23 O 1.43017 * 109.25991 * 56.85100 * 22 21 20 24 24 C 1.43012 * 113.73875 * 301.32869 * 23 22 21 25 25 C 1.47019 * 110.99669 * 169.99880 * 20 19 18 26 26 C 1.38232 * 120.00177 * 359.69912 * 18 17 16 27 27 C 1.38236 * 119.99956 * 89.99953 * 15 14 9 28 28 H 0.96999 * 120.00109 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47287 * 30.40022 * 10 9 7 30 30 H 1.09005 * 109.46908 * 150.40584 * 10 9 7 31 31 H 0.96703 * 116.99748 * 180.02562 * 13 11 10 32 32 H 1.08999 * 109.47210 * 210.00040 * 14 9 7 33 33 H 1.09001 * 109.47457 * 330.00286 * 14 9 7 34 34 H 1.07994 * 119.99760 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.99846 * 180.27165 * 17 16 15 36 36 H 1.08993 * 109.47040 * 29.98276 * 19 18 17 37 37 H 1.09006 * 109.46659 * 149.97429 * 19 18 17 38 38 H 1.08997 * 109.50495 * 297.54557 * 21 20 19 39 39 H 1.09005 * 109.50519 * 57.67113 * 21 20 19 40 40 H 1.09002 * 109.51226 * 296.91446 * 22 21 20 41 41 H 1.09003 * 109.54667 * 176.80496 * 22 21 20 42 42 H 1.09009 * 109.50656 * 298.73673 * 24 23 22 43 43 H 1.08997 * 109.54323 * 178.62717 * 24 23 22 44 44 H 1.08999 * 109.50803 * 302.32980 * 25 20 19 45 45 H 1.09003 * 109.50296 * 62.42170 * 25 20 19 46 46 H 1.07999 * 120.00152 * 179.97438 * 26 18 17 47 47 H 1.07997 * 120.00330 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0135 -1.2462 0.3979 9 7 1.4229 -2.3321 -0.5028 10 6 0.1379 -2.2410 -1.2004 11 6 -0.9849 -2.3939 -0.2069 12 8 -0.7372 -2.5613 0.9638 13 8 -2.2603 -2.3432 -0.6225 14 6 2.0796 -3.6319 -0.3439 15 6 1.6227 -4.2717 0.9418 16 6 2.3193 -4.0422 2.1137 17 6 1.8970 -4.6247 3.2940 18 6 0.7850 -5.4459 3.3004 19 6 0.3284 -6.0860 4.5861 20 7 0.9869 -7.3895 4.7449 21 6 0.5389 -8.3354 3.7127 22 6 1.2920 -9.6579 3.8786 23 8 1.0795 -10.1591 5.2011 24 6 1.5052 -9.2634 6.2315 25 6 0.7542 -7.9368 6.0895 26 6 0.0916 -5.6795 2.1276 27 6 0.5104 -5.0924 0.9483 28 1 -0.4850 0.8400 -0.0004 29 1 0.0589 -1.2712 -1.6915 30 1 0.0728 -3.0327 -1.9469 31 1 -2.9460 -2.4459 0.0516 32 1 1.8180 -4.2762 -1.1833 33 1 3.1603 -3.4921 -0.3162 34 1 3.1906 -3.4042 2.1078 35 1 2.4386 -4.4420 4.2104 36 1 0.5901 -5.4419 5.4255 37 1 -0.7523 -6.2257 4.5585 38 1 -0.5317 -8.5103 3.8193 39 1 0.7440 -7.9210 2.7255 40 1 2.3575 -9.4925 3.7188 41 1 0.9230 -10.3814 3.1516 42 1 2.5769 -9.0864 6.1402 43 1 1.2902 -9.7007 7.2065 44 1 1.1166 -7.2315 6.8373 45 1 -0.3130 -8.1047 6.2343 46 1 -0.7769 -6.3214 2.1326 47 1 -0.0309 -5.2756 0.0319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:04 Heat of formation + Delta-G solvation = -68.483609 kcal Electronic energy + Delta-G solvation = -29736.726725 eV Core-core repulsion = 25692.729229 eV Total energy + Delta-G solvation = -4043.997495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = -4.07 seconds Orbital eigenvalues (eV) -39.85259 -38.88025 -38.33952 -36.20509 -35.37246 -34.26240 -32.30465 -31.35971 -30.69788 -30.24254 -28.42765 -27.20009 -25.75963 -24.19596 -23.70379 -22.09474 -21.96820 -20.54265 -20.23143 -19.77061 -16.88134 -16.70521 -16.58290 -16.33756 -15.72550 -15.40709 -15.27989 -15.17461 -15.15222 -14.65446 -14.39792 -14.17159 -14.04311 -13.97576 -13.41953 -13.23788 -12.83652 -12.68540 -12.30669 -12.07451 -11.85798 -11.65253 -11.53869 -11.45516 -11.29772 -10.99548 -10.92161 -10.78240 -10.64060 -10.58598 -10.29073 -10.22135 -9.94676 -9.89371 -9.81673 -9.06671 -8.56588 -8.49859 -8.15899 -7.86422 -7.16352 -5.98069 -3.22888 1.98638 2.14051 3.34186 3.40721 3.41564 3.62547 3.78519 4.01850 4.31517 4.54411 4.60552 4.69524 4.84966 4.86478 4.96945 5.08951 5.23173 5.24157 5.28823 5.37698 5.45218 5.47760 5.56234 5.57730 5.61008 5.68190 5.76843 5.78634 5.81041 6.06387 6.14567 6.30001 6.31937 6.49558 6.69318 6.74299 6.83015 6.86277 6.94905 6.97413 7.05536 7.12438 7.19262 7.43618 7.64628 7.72997 7.95904 8.10233 8.96901 9.51760 9.69081 10.06525 11.13076 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002966 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.579652 B = 9437.154878 C = 9906.767546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.910 3.090 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.082 0.918 9 N -0.558 5.558 10 C 0.188 3.812 11 C 0.473 3.527 12 O -0.500 6.500 13 O -0.548 6.548 14 C 0.173 3.827 15 C -0.065 4.065 16 C -0.101 4.101 17 C -0.099 4.099 18 C -0.100 4.100 19 C 0.103 3.897 20 N -0.530 5.530 21 C 0.015 3.985 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.016 3.984 26 C -0.113 4.113 27 C -0.099 4.099 28 H 0.258 0.742 29 H 0.113 0.887 30 H 0.050 0.950 31 H 0.377 0.623 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.102 0.898 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -15.322 5.362 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.739 3.261 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.378 4.378 8 H 0.100 0.900 9 N -0.277 5.277 10 C 0.059 3.941 11 C 0.312 3.688 12 O -0.385 6.385 13 O -0.359 6.359 14 C 0.047 3.953 15 C -0.069 4.069 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.101 4.101 19 C -0.024 4.024 20 N -0.255 5.255 21 C -0.113 4.113 22 C -0.013 4.013 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.112 4.112 26 C -0.132 4.132 27 C -0.118 4.118 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.068 0.932 31 H 0.232 0.768 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.120 0.880 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.410 -15.255 5.361 16.231 hybrid contribution -1.249 1.350 0.978 2.083 sum 0.162 -13.905 6.339 15.283 Atomic orbital electron populations 1.69828 1.05278 1.26006 1.53513 1.24755 0.95204 0.98499 1.01233 0.86234 0.78887 0.82844 0.78111 1.20908 1.21737 1.21011 1.19277 0.96909 0.84899 1.36693 0.90001 1.44478 1.18238 1.02101 1.62850 1.20475 0.81094 1.02195 0.90384 1.25179 0.81746 0.70492 0.91405 1.90563 1.83612 1.44867 1.19428 1.84638 1.18657 1.86844 1.45736 1.20118 0.97100 0.86475 0.91608 1.20857 0.94752 0.93305 0.97955 1.20856 1.00113 0.98709 0.92275 1.20758 0.96070 0.97410 0.97569 1.19275 0.97314 0.99827 0.93667 1.20965 0.95692 0.89247 0.96498 1.62251 1.58366 1.02820 1.02098 1.22855 0.97632 0.93142 0.97654 1.22683 0.99959 0.94485 0.84146 1.87957 1.84605 1.43279 1.14945 1.22640 0.98375 0.88891 0.91313 1.22793 0.99239 0.97361 0.91815 1.20692 0.99055 1.00710 0.92752 1.20662 0.96515 0.97668 0.96993 0.93150 0.86914 0.93240 0.76783 0.93047 0.91837 0.86918 0.87368 0.90255 0.94404 0.94303 0.88667 0.92197 0.88571 0.92252 0.88669 0.89672 0.94166 0.88033 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 8.94 55.49 0.50 -24.48 16 2 C 0.00 0.02 4.90 -17.43 -0.09 -0.06 16 3 Si 0.91 21.16 29.62 -169.99 -5.04 16.12 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.43 9.70 -15.06 -0.15 -6.57 16 8 H 0.08 2.07 7.93 -52.48 -0.42 1.65 16 9 N -0.56 -12.99 2.07 -175.98 -0.36 -13.35 16 10 C 0.19 4.25 5.59 -5.19 -0.03 4.22 16 11 C 0.47 11.13 6.17 36.01 0.22 11.35 16 12 O -0.50 -13.19 14.23 -18.75 -0.27 -13.45 16 13 O -0.55 -11.26 13.42 -39.27 -0.53 -11.79 16 14 C 0.17 3.37 5.84 -5.19 -0.03 3.33 16 15 C -0.07 -1.27 4.49 -104.62 -0.47 -1.74 16 16 C -0.10 -1.94 9.70 -39.58 -0.38 -2.32 16 17 C -0.10 -1.75 9.70 -39.59 -0.38 -2.13 16 18 C -0.10 -1.65 4.90 -104.63 -0.51 -2.16 16 19 C 0.10 1.40 5.12 -4.97 -0.03 1.38 16 20 N -0.53 -6.55 4.72 -235.75 -1.11 -7.66 16 21 C 0.02 0.18 5.27 -3.72 -0.02 0.16 16 22 C 0.06 0.67 7.01 37.20 0.26 0.93 16 23 O -0.39 -4.49 10.83 -35.23 -0.38 -4.87 16 24 C 0.06 0.62 7.01 37.21 0.26 0.88 16 25 C 0.02 0.17 5.65 -3.71 -0.02 0.14 16 26 C -0.11 -1.92 7.94 -39.58 -0.31 -2.23 16 27 C -0.10 -1.83 7.91 -39.58 -0.31 -2.14 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.11 2.78 6.30 -51.93 -0.33 2.45 16 30 H 0.05 0.95 7.89 -51.93 -0.41 0.54 16 31 H 0.38 6.36 9.10 45.56 0.41 6.78 16 32 H 0.05 0.88 7.83 -51.93 -0.41 0.47 16 33 H 0.06 1.17 7.97 -51.93 -0.41 0.75 16 34 H 0.11 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.08 1.03 7.98 -51.93 -0.41 0.62 16 37 H 0.04 0.51 8.06 -51.93 -0.42 0.10 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 1.19 6.01 -51.93 -0.31 0.88 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 45 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 1.53 8.00 -52.49 -0.42 1.11 16 47 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -31.69 378.55 -9.96 -41.65 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.48 Total: 9.10 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.99 Total: 3.03 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.98 Total: -45.49 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.18 Total: -30.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.04 Total: 16.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.69 -9.96 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.832 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -4.07 seconds