Wall clock time and date at job start Tue Mar 31 2020 23:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99908 * 2 1 4 4 H 1.48508 * 109.47042 * 239.99584 * 3 2 1 5 5 H 1.48499 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47350 * 119.99936 * 3 2 1 7 7 C 1.38807 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00442 * 205.14256 * 7 2 1 9 9 N 1.36936 * 120.00118 * 25.14355 * 7 2 1 10 10 C 1.46507 * 119.99659 * 8.06622 * 9 7 2 11 11 C 1.50699 * 109.46753 * 270.40006 * 10 9 7 12 12 O 1.20826 * 120.00437 * 0.02562 * 11 10 9 13 13 O 1.34235 * 119.99653 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00367 * 188.06046 * 9 7 2 15 15 C 1.50704 * 109.46936 * 90.00343 * 14 9 7 16 16 C 1.38242 * 119.99793 * 269.72698 * 15 14 9 17 17 C 1.38233 * 119.99444 * 179.74117 * 16 15 14 18 18 C 1.38230 * 120.00251 * 0.55462 * 17 16 15 19 19 C 1.50703 * 119.99826 * 179.71981 * 18 17 16 20 20 N 1.46900 * 109.47218 * 269.97531 * 19 18 17 21 21 C 1.47011 * 111.00299 * 293.63622 * 20 19 18 22 22 C 1.53089 * 109.25744 * 177.60749 * 21 20 19 23 23 O 1.43017 * 109.25991 * 56.85100 * 22 21 20 24 24 C 1.43012 * 113.73875 * 301.32869 * 23 22 21 25 25 C 1.47019 * 110.99669 * 169.99880 * 20 19 18 26 26 C 1.38232 * 120.00177 * 359.69912 * 18 17 16 27 27 C 1.38236 * 119.99956 * 89.99953 * 15 14 9 28 28 H 0.96999 * 120.00109 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47287 * 30.40022 * 10 9 7 30 30 H 1.09005 * 109.46908 * 150.40584 * 10 9 7 31 31 H 0.96703 * 116.99748 * 180.02562 * 13 11 10 32 32 H 1.08999 * 109.47210 * 210.00040 * 14 9 7 33 33 H 1.09001 * 109.47457 * 330.00286 * 14 9 7 34 34 H 1.07994 * 119.99760 * 0.02562 * 16 15 14 35 35 H 1.08003 * 119.99846 * 180.27165 * 17 16 15 36 36 H 1.08993 * 109.47040 * 29.98276 * 19 18 17 37 37 H 1.09006 * 109.46659 * 149.97429 * 19 18 17 38 38 H 1.08997 * 109.50495 * 297.54557 * 21 20 19 39 39 H 1.09005 * 109.50519 * 57.67113 * 21 20 19 40 40 H 1.09002 * 109.51226 * 296.91446 * 22 21 20 41 41 H 1.09003 * 109.54667 * 176.80496 * 22 21 20 42 42 H 1.09009 * 109.50656 * 298.73673 * 24 23 22 43 43 H 1.08997 * 109.54323 * 178.62717 * 24 23 22 44 44 H 1.08999 * 109.50803 * 302.32980 * 25 20 19 45 45 H 1.09003 * 109.50296 * 62.42170 * 25 20 19 46 46 H 1.07999 * 120.00152 * 179.97438 * 26 18 17 47 47 H 1.07997 * 120.00330 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0135 -1.2462 0.3979 9 7 1.4229 -2.3321 -0.5028 10 6 0.1379 -2.2410 -1.2004 11 6 -0.9849 -2.3939 -0.2069 12 8 -0.7372 -2.5613 0.9638 13 8 -2.2603 -2.3432 -0.6225 14 6 2.0796 -3.6319 -0.3439 15 6 1.6227 -4.2717 0.9418 16 6 2.3193 -4.0422 2.1137 17 6 1.8970 -4.6247 3.2940 18 6 0.7850 -5.4459 3.3004 19 6 0.3284 -6.0860 4.5861 20 7 0.9869 -7.3895 4.7449 21 6 0.5389 -8.3354 3.7127 22 6 1.2920 -9.6579 3.8786 23 8 1.0795 -10.1591 5.2011 24 6 1.5052 -9.2634 6.2315 25 6 0.7542 -7.9368 6.0895 26 6 0.0916 -5.6795 2.1276 27 6 0.5104 -5.0924 0.9483 28 1 -0.4850 0.8400 -0.0004 29 1 0.0589 -1.2712 -1.6915 30 1 0.0728 -3.0327 -1.9469 31 1 -2.9460 -2.4459 0.0516 32 1 1.8180 -4.2762 -1.1833 33 1 3.1603 -3.4921 -0.3162 34 1 3.1906 -3.4042 2.1078 35 1 2.4386 -4.4420 4.2104 36 1 0.5901 -5.4419 5.4255 37 1 -0.7523 -6.2257 4.5585 38 1 -0.5317 -8.5103 3.8193 39 1 0.7440 -7.9210 2.7255 40 1 2.3575 -9.4925 3.7188 41 1 0.9230 -10.3814 3.1516 42 1 2.5769 -9.0864 6.1402 43 1 1.2902 -9.7007 7.2065 44 1 1.1166 -7.2315 6.8373 45 1 -0.3130 -8.1047 6.2343 46 1 -0.7769 -6.3214 2.1326 47 1 -0.0309 -5.2756 0.0319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:57 Heat of formation + Delta-G solvation = -88.539065 kcal Electronic energy + Delta-G solvation = -29737.596394 eV Core-core repulsion = 25692.729229 eV Total energy + Delta-G solvation = -4044.867165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -40.89151 -40.44623 -39.75301 -37.64139 -36.64964 -36.05927 -33.89739 -32.39183 -32.10295 -31.59648 -29.76301 -28.82118 -27.18603 -25.13297 -24.99048 -23.58038 -23.41303 -21.93467 -21.37641 -21.26364 -18.74469 -18.35640 -17.59182 -17.29485 -17.14750 -16.97592 -16.70127 -16.43406 -16.12282 -15.92816 -15.89225 -15.61961 -15.30491 -15.17540 -15.00252 -14.88449 -14.16049 -13.94894 -13.44743 -13.40908 -13.24768 -13.17028 -13.01029 -12.71730 -12.57655 -12.42813 -12.35660 -12.28522 -12.09151 -12.02680 -11.78328 -11.70963 -11.61663 -11.52228 -10.91456 -10.67875 -10.47039 -9.59120 -9.48906 -9.25923 -8.96902 -7.95470 -5.20033 0.61687 0.73503 1.48842 1.51563 1.57657 2.19930 2.49317 2.70896 2.87890 2.93890 3.18850 3.28183 3.76067 3.78378 3.93972 3.96957 4.04662 4.17580 4.22293 4.25191 4.30384 4.34057 4.37702 4.59686 4.60866 4.63075 4.68007 4.72932 4.75135 4.81777 4.89664 4.92292 4.99578 5.00922 5.21672 5.30210 5.34401 5.36257 5.64451 5.68178 5.77214 5.91535 5.98457 5.98951 6.16756 6.20586 6.27458 6.34798 7.04098 7.69066 7.89103 8.16826 9.13578 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002966 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.579652 B = 9437.154878 C = 9906.767546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.049 4.049 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.301 1.301 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.570 5.570 10 C 0.186 3.814 11 C 0.477 3.523 12 O -0.533 6.533 13 O -0.542 6.542 14 C 0.171 3.829 15 C -0.082 4.082 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.095 4.095 19 C 0.108 3.892 20 N -0.538 5.538 21 C 0.017 3.983 22 C 0.066 3.934 23 O -0.404 6.404 24 C 0.063 3.937 25 C 0.016 3.984 26 C -0.116 4.116 27 C -0.106 4.106 28 H 0.248 0.752 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.395 0.605 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.039 0.961 46 H 0.119 0.881 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 -16.795 5.948 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.228 1.228 6 H -0.213 1.213 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.289 5.289 10 C 0.057 3.943 11 C 0.317 3.683 12 O -0.420 6.420 13 O -0.354 6.354 14 C 0.046 3.954 15 C -0.085 4.085 16 C -0.140 4.140 17 C -0.128 4.128 18 C -0.096 4.096 19 C -0.019 4.019 20 N -0.263 5.263 21 C -0.111 4.111 22 C -0.011 4.011 23 O -0.323 6.323 24 C -0.013 4.013 25 C -0.112 4.112 26 C -0.135 4.135 27 C -0.125 4.125 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.252 0.748 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.136 0.864 44 H 0.117 0.883 45 H 0.057 0.943 46 H 0.137 0.863 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.428 -16.763 5.938 17.841 hybrid contribution -1.270 1.679 0.833 2.264 sum 0.158 -15.084 6.771 16.535 Atomic orbital electron populations 1.69975 1.06210 1.25542 1.55603 1.25360 0.95847 1.00899 1.02214 0.85358 0.77517 0.79575 0.78066 1.19997 1.22758 1.21251 1.19505 0.96954 0.86087 1.35319 0.90184 1.44523 1.18567 1.02938 1.62838 1.20457 0.80908 1.02225 0.90737 1.25262 0.82539 0.69504 0.90956 1.90544 1.84271 1.46495 1.20663 1.84570 1.18300 1.86298 1.46225 1.20261 0.97063 0.85342 0.92740 1.20838 0.95484 0.94399 0.97759 1.20990 1.00463 0.99361 0.93138 1.20980 0.96707 0.97505 0.97620 1.19589 0.96380 0.98853 0.94800 1.20892 0.95763 0.90076 0.95184 1.62228 1.58272 1.02475 1.03372 1.22838 0.97707 0.93563 0.97005 1.22729 0.99735 0.94244 0.84362 1.87942 1.84780 1.44045 1.15506 1.22798 0.98271 0.88391 0.91883 1.22877 0.99421 0.98023 0.90835 1.20933 0.99511 1.00521 0.92490 1.20800 0.96218 0.97657 0.97857 0.94267 0.89155 0.89778 0.74779 0.90552 0.91387 0.87525 0.85972 0.89559 0.94241 0.94469 0.89685 0.92387 0.86896 0.92183 0.86386 0.88348 0.94252 0.86266 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.94 8.94 21.65 0.19 -51.75 16 2 C -0.05 -2.59 4.90 84.86 0.42 -2.18 16 3 Si 0.97 44.02 29.62 68.60 2.03 46.05 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.25 -12.88 9.70 84.03 0.82 -12.06 16 8 H 0.08 4.06 7.93 -2.91 -0.02 4.04 16 9 N -0.57 -26.27 2.07 -710.67 -1.47 -27.74 16 10 C 0.19 8.30 5.59 85.63 0.48 8.77 16 11 C 0.48 22.15 6.17 71.24 0.44 22.59 16 12 O -0.53 -27.94 14.23 21.96 0.31 -27.62 16 13 O -0.54 -21.65 13.42 -51.46 -0.69 -22.34 16 14 C 0.17 6.51 5.84 85.63 0.50 7.01 16 15 C -0.08 -3.15 4.49 -19.86 -0.09 -3.24 16 16 C -0.12 -4.64 9.70 22.27 0.22 -4.43 16 17 C -0.11 -3.79 9.70 22.27 0.22 -3.57 16 18 C -0.10 -3.02 4.90 -19.87 -0.10 -3.12 16 19 C 0.11 2.76 5.12 85.56 0.44 3.20 16 20 N -0.54 -12.30 4.72 -899.78 -4.24 -16.54 16 21 C 0.02 0.37 5.27 86.31 0.46 0.82 16 22 C 0.07 1.26 7.01 72.01 0.50 1.77 16 23 O -0.40 -8.48 10.83 -148.98 -1.61 -10.09 16 24 C 0.06 1.05 7.01 72.01 0.50 1.56 16 25 C 0.02 0.29 5.65 86.31 0.49 0.78 16 26 C -0.12 -3.78 7.94 22.27 0.18 -3.60 16 27 C -0.11 -3.81 7.91 22.27 0.18 -3.63 16 28 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.09 4.47 6.30 -2.39 -0.02 4.46 16 30 H 0.08 3.09 7.89 -2.38 -0.02 3.07 16 31 H 0.39 12.78 9.10 -74.06 -0.67 12.10 16 32 H 0.08 2.47 7.83 -2.39 -0.02 2.45 16 33 H 0.07 2.47 7.97 -2.39 -0.02 2.45 16 34 H 0.11 4.10 8.06 -2.91 -0.02 4.07 16 35 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.09 2.08 7.98 -2.39 -0.02 2.06 16 37 H 0.04 1.00 8.06 -2.38 -0.02 0.98 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 2.01 6.01 -2.38 -0.01 2.00 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 45 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.12 3.39 8.00 -2.91 -0.02 3.37 16 47 H 0.11 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -66.95 378.55 0.46 -66.50 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.30 Total: 32.87 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.64 Total: 10.67 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -5.52 Total: -96.02 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -1.99 Total: -60.06 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.95 0.46 -66.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.042 kcal (2) G-P(sol) polarization free energy of solvation -66.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds