Wall clock time and date at job start Tue Mar 31 2020 20:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46879 * 2 1 4 4 C 1.35908 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.38735 * 120.05276 * 180.02562 * 4 3 2 6 6 C 1.38145 * 119.94124 * 180.02562 * 5 4 3 7 7 C 1.38264 * 120.05162 * 0.02562 * 6 5 4 8 8 C 1.50708 * 119.93705 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47124 * 90.00378 * 8 7 6 10 10 C 1.50696 * 109.47122 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00012 * 359.97438 * 10 9 8 12 12 O 1.34235 * 120.00278 * 179.97438 * 10 9 8 13 13 C 1.45200 * 117.00057 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46929 * 180.02562 * 13 12 10 15 15 C 1.50702 * 112.99906 * 53.52172 * 14 13 12 16 16 H 1.07996 * 120.00096 * 245.39637 * 15 14 13 17 17 C 1.37879 * 119.99846 * 65.39545 * 15 14 13 18 18 N 1.31508 * 120.00187 * 6.62322 * 17 15 14 19 19 Si 1.86799 * 119.99783 * 186.62190 * 17 15 14 20 20 H 1.48501 * 109.47497 * 60.00194 * 19 17 15 21 21 H 1.48500 * 109.46929 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47290 * 299.99607 * 19 17 15 23 23 C 1.54032 * 113.81776 * 281.53994 * 14 13 12 24 24 O 1.44175 * 85.51675 * 223.19432 * 23 14 13 25 25 C 1.44174 * 93.34226 * 24.19310 * 24 23 14 26 26 C 1.38267 * 120.11804 * 0.25373 * 7 6 5 27 27 C 1.38146 * 120.05010 * 359.45145 * 26 7 6 28 28 H 1.08994 * 109.47056 * 60.00300 * 1 2 3 29 29 H 1.09006 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47330 * 300.00108 * 1 2 3 31 31 H 1.08998 * 109.47330 * 239.99892 * 2 1 3 32 32 H 1.09002 * 109.46748 * 119.99883 * 2 1 3 33 33 H 1.08002 * 120.03066 * 359.97438 * 5 4 3 34 34 H 1.08001 * 119.96909 * 179.97438 * 6 5 4 35 35 H 1.09008 * 109.46541 * 209.99978 * 8 7 6 36 36 H 1.08993 * 109.47339 * 329.99680 * 8 7 6 37 37 H 1.09008 * 109.47085 * 299.99267 * 9 8 7 38 38 H 1.08993 * 109.47582 * 59.99451 * 9 8 7 39 39 H 1.09003 * 109.47151 * 300.00613 * 13 12 10 40 40 H 1.08995 * 109.47006 * 60.00677 * 13 12 10 41 41 H 0.96997 * 120.00387 * 179.97438 * 18 17 15 42 42 H 1.09004 * 113.86430 * 337.33552 * 23 14 13 43 43 H 1.08994 * 113.87034 * 109.04664 * 23 14 13 44 44 H 1.09006 * 113.86685 * 221.66521 * 25 24 23 45 45 H 1.08997 * 113.86922 * 89.95017 * 25 24 23 46 46 H 1.08000 * 119.97234 * 179.70421 * 26 7 6 47 47 H 1.07994 * 120.02317 * 180.25277 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8851 2.8068 0.0011 6 6 5.2550 2.9852 0.0011 7 6 6.0961 1.8878 0.0000 8 6 7.5902 2.0853 -0.0005 9 6 8.0964 2.1511 1.4417 10 6 9.5905 2.3480 1.4412 11 8 10.1890 2.4271 0.3946 12 8 10.2564 2.4356 2.6034 13 6 11.6940 2.6245 2.5268 14 6 12.2745 2.7002 3.9404 15 6 11.8876 1.5240 4.7995 16 1 11.2597 1.6713 5.6658 17 6 12.3354 0.2598 4.4796 18 7 13.2030 0.0966 3.5049 19 14 11.7095 -1.2211 5.4306 20 1 10.2346 -1.3155 5.2855 21 1 12.3390 -2.4551 4.8956 22 1 12.0569 -1.0703 6.8665 23 6 12.0724 4.0659 4.6235 24 8 13.4398 3.9238 5.0580 25 6 13.7786 3.0303 3.9784 26 6 5.5689 0.6096 -0.0064 27 6 4.1997 0.4259 -0.0002 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2285 3.6643 0.0007 34 1 5.6692 3.9826 0.0012 35 1 8.0667 1.2509 -0.5152 36 1 7.8335 3.0155 -0.5139 37 1 7.6199 2.9856 1.9564 38 1 7.8531 1.2210 1.9551 39 1 12.1429 1.7858 1.9945 40 1 11.9109 3.5506 1.9946 41 1 13.5183 -0.7928 3.2801 42 1 11.9146 4.8887 3.9262 43 1 11.3472 4.0491 5.4370 44 1 14.4065 2.1919 4.2803 45 1 14.1415 3.5367 3.0841 46 1 6.2281 -0.2459 -0.0120 47 1 3.7885 -0.5726 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646889745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:00 Heat of formation + Delta-G solvation = -124.888519 kcal Electronic energy + Delta-G solvation = -27903.566548 eV Core-core repulsion = 23824.830401 eV Total energy + Delta-G solvation = -4078.736147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 17.73 seconds Orbital eigenvalues (eV) -40.42531 -39.83898 -39.06625 -38.05432 -35.76118 -33.74774 -32.90706 -32.01799 -31.10512 -30.06774 -29.00392 -25.64382 -25.35283 -24.83439 -24.30414 -23.62190 -22.25332 -21.11021 -19.92241 -18.99060 -18.52261 -17.08801 -16.50395 -16.42028 -16.35080 -15.84773 -15.64766 -15.26437 -14.98049 -14.62095 -14.38493 -14.36301 -14.01982 -13.93233 -13.72128 -13.68640 -13.29604 -12.94450 -12.81826 -12.46061 -12.10283 -12.02120 -11.91287 -11.81508 -11.65201 -11.36840 -11.16597 -10.98177 -10.94140 -10.82275 -10.80825 -10.46548 -10.11572 -9.93620 -9.52534 -9.40673 -9.18044 -9.05918 -8.76408 -8.31145 -8.24856 -6.18102 -4.20529 1.16210 1.22495 2.83183 2.90366 3.26767 3.31150 3.33977 3.37715 3.64598 4.32974 4.49771 4.52206 4.65676 4.71581 4.78721 4.84942 4.89498 5.02939 5.07817 5.12203 5.17388 5.20719 5.34378 5.37261 5.43615 5.52757 5.61892 5.68073 5.77685 5.93962 5.96080 6.05582 6.08421 6.14674 6.18476 6.18965 6.31070 6.38948 6.52636 6.56514 6.59082 6.97687 7.13750 7.17793 7.28138 7.35397 7.40555 7.77978 8.17740 8.49931 8.76074 9.42806 10.90357 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002270 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.797579 B =12334.327502 C =13316.674395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.122 3.878 5 C -0.151 4.151 6 C -0.075 4.075 7 C -0.115 4.115 8 C -0.065 4.065 9 C -0.109 4.109 10 C 0.451 3.549 11 O -0.527 6.527 12 O -0.330 6.330 13 C 0.083 3.917 14 C 0.032 3.968 15 C -0.485 4.485 16 H 0.065 0.935 17 C 0.066 3.934 18 N -0.889 5.889 19 Si 0.898 3.102 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.028 3.972 24 O -0.389 6.389 25 C 0.050 3.950 26 C -0.074 4.074 27 C -0.206 4.206 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.265 0.735 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.047 0.953 46 H 0.127 0.873 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.668 0.893 -8.558 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.077 3.923 5 C -0.169 4.169 6 C -0.093 4.093 7 C -0.115 4.115 8 C -0.102 4.102 9 C -0.147 4.147 10 C 0.295 3.705 11 O -0.418 6.418 12 O -0.245 6.245 13 C 0.009 3.991 14 C 0.031 3.969 15 C -0.522 4.522 16 H 0.083 0.917 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.725 3.275 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.049 4.049 24 O -0.308 6.308 25 C -0.027 4.027 26 C -0.092 4.092 27 C -0.225 4.225 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.065 0.935 46 H 0.145 0.855 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.347 1.009 -8.705 22.154 hybrid contribution -0.173 -1.236 0.150 1.257 sum -20.520 -0.226 -8.556 22.234 Atomic orbital electron populations 1.21776 0.92767 1.02864 1.03511 1.22774 0.95836 0.82058 1.01462 1.86056 1.19213 1.29237 1.88790 1.18997 0.82123 0.94241 0.96898 1.20411 0.95197 0.94739 1.06585 1.20913 0.91984 0.98907 0.97472 1.19797 0.95560 0.93082 1.03063 1.20338 0.90137 1.04359 0.95355 1.21325 0.89023 1.05590 0.98781 1.23574 0.91225 0.73026 0.82701 1.90602 1.70530 1.47114 1.33559 1.86544 1.24726 1.80904 1.32327 1.23421 0.74748 0.99815 1.01080 1.21115 0.91566 0.93413 0.90778 1.20502 1.30997 0.89864 1.10846 0.91657 1.24952 0.94395 0.99015 0.95264 1.69875 1.29794 1.23251 1.29767 0.86550 0.79276 0.81494 0.80146 1.20028 1.21265 1.20065 1.24091 0.85114 0.97569 0.98111 1.89490 1.25718 1.68559 1.46996 1.23922 0.99456 0.91342 0.87974 1.20918 0.94237 0.97014 0.97013 1.21217 0.94326 0.97965 1.09002 0.91554 0.90374 0.91491 0.92072 0.91971 0.85288 0.85136 0.90085 0.90098 0.88028 0.87890 0.89770 0.94546 0.92522 0.92884 0.90386 0.88218 0.93518 0.85527 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.38 5.46 37.16 0.20 0.58 16 3 O -0.32 -3.25 10.14 -19.45 -0.20 -3.44 16 4 C 0.12 1.32 6.69 -39.22 -0.26 1.05 16 5 C -0.15 -1.56 9.99 -39.43 -0.39 -1.95 16 6 C -0.07 -0.76 9.69 -39.61 -0.38 -1.14 16 7 C -0.11 -1.26 5.14 -104.60 -0.54 -1.80 16 8 C -0.06 -0.78 4.63 -27.88 -0.13 -0.91 16 9 C -0.11 -1.49 5.79 -27.89 -0.16 -1.65 16 10 C 0.45 8.49 7.96 36.00 0.29 8.78 16 11 O -0.53 -11.08 15.73 -18.75 -0.29 -11.38 16 12 O -0.33 -7.16 9.82 -39.27 -0.39 -7.55 16 13 C 0.08 1.92 4.67 37.16 0.17 2.09 16 14 C 0.03 0.77 0.62 -154.58 -0.10 0.67 16 15 C -0.48 -12.75 7.92 -34.44 -0.27 -13.03 16 16 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 17 C 0.07 1.75 5.25 -17.82 -0.09 1.65 16 18 N -0.89 -24.02 11.31 55.43 0.63 -23.40 16 19 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 C 0.03 0.61 8.35 37.61 0.31 0.92 16 24 O -0.39 -9.27 12.40 -35.23 -0.44 -9.70 16 25 C 0.05 1.18 7.91 37.61 0.30 1.48 16 26 C -0.07 -0.78 9.69 -39.60 -0.38 -1.17 16 27 C -0.21 -2.08 9.04 -39.44 -0.36 -2.44 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.08 1.03 8.04 -51.92 -0.42 0.62 16 36 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 37 H 0.10 1.20 8.14 -51.92 -0.42 0.77 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.08 2.17 7.21 -51.93 -0.37 1.79 16 40 H 0.04 0.78 8.04 -51.93 -0.42 0.37 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.05 1.02 8.03 -51.93 -0.42 0.60 16 43 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 44 H 0.10 2.53 7.36 -51.93 -0.38 2.15 16 45 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 46 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -30.57 394.90 -8.50 -39.06 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.32 Total: 2.06 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.41 Total: -7.28 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.63 Total: -23.40 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.31 Total: -32.07 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.57 -8.50 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.828 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.73 seconds