Wall clock time and date at job start Tue Mar 31 2020 20:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46879 * 2 1 4 4 C 1.35908 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.38735 * 120.05276 * 180.02562 * 4 3 2 6 6 C 1.38145 * 119.94124 * 180.02562 * 5 4 3 7 7 C 1.38264 * 120.05162 * 0.02562 * 6 5 4 8 8 C 1.50708 * 119.93705 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47124 * 90.00378 * 8 7 6 10 10 C 1.50696 * 109.47122 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00012 * 359.97438 * 10 9 8 12 12 O 1.34235 * 120.00278 * 179.97438 * 10 9 8 13 13 C 1.45200 * 117.00057 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46929 * 180.02562 * 13 12 10 15 15 C 1.50702 * 112.99906 * 53.52172 * 14 13 12 16 16 H 1.07996 * 120.00096 * 245.39637 * 15 14 13 17 17 C 1.37879 * 119.99846 * 65.39545 * 15 14 13 18 18 N 1.31508 * 120.00187 * 6.62322 * 17 15 14 19 19 Si 1.86799 * 119.99783 * 186.62190 * 17 15 14 20 20 H 1.48501 * 109.47497 * 60.00194 * 19 17 15 21 21 H 1.48500 * 109.46929 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47290 * 299.99607 * 19 17 15 23 23 C 1.54032 * 113.81776 * 281.53994 * 14 13 12 24 24 O 1.44175 * 85.51675 * 223.19432 * 23 14 13 25 25 C 1.44174 * 93.34226 * 24.19310 * 24 23 14 26 26 C 1.38267 * 120.11804 * 0.25373 * 7 6 5 27 27 C 1.38146 * 120.05010 * 359.45145 * 26 7 6 28 28 H 1.08994 * 109.47056 * 60.00300 * 1 2 3 29 29 H 1.09006 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47330 * 300.00108 * 1 2 3 31 31 H 1.08998 * 109.47330 * 239.99892 * 2 1 3 32 32 H 1.09002 * 109.46748 * 119.99883 * 2 1 3 33 33 H 1.08002 * 120.03066 * 359.97438 * 5 4 3 34 34 H 1.08001 * 119.96909 * 179.97438 * 6 5 4 35 35 H 1.09008 * 109.46541 * 209.99978 * 8 7 6 36 36 H 1.08993 * 109.47339 * 329.99680 * 8 7 6 37 37 H 1.09008 * 109.47085 * 299.99267 * 9 8 7 38 38 H 1.08993 * 109.47582 * 59.99451 * 9 8 7 39 39 H 1.09003 * 109.47151 * 300.00613 * 13 12 10 40 40 H 1.08995 * 109.47006 * 60.00677 * 13 12 10 41 41 H 0.96997 * 120.00387 * 179.97438 * 18 17 15 42 42 H 1.09004 * 113.86430 * 337.33552 * 23 14 13 43 43 H 1.08994 * 113.87034 * 109.04664 * 23 14 13 44 44 H 1.09006 * 113.86685 * 221.66521 * 25 24 23 45 45 H 1.08997 * 113.86922 * 89.95017 * 25 24 23 46 46 H 1.08000 * 119.97234 * 179.70421 * 26 7 6 47 47 H 1.07994 * 120.02317 * 180.25277 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8851 2.8068 0.0011 6 6 5.2550 2.9852 0.0011 7 6 6.0961 1.8878 0.0000 8 6 7.5902 2.0853 -0.0005 9 6 8.0964 2.1511 1.4417 10 6 9.5905 2.3480 1.4412 11 8 10.1890 2.4271 0.3946 12 8 10.2564 2.4356 2.6034 13 6 11.6940 2.6245 2.5268 14 6 12.2745 2.7002 3.9404 15 6 11.8876 1.5240 4.7995 16 1 11.2597 1.6713 5.6658 17 6 12.3354 0.2598 4.4796 18 7 13.2030 0.0966 3.5049 19 14 11.7095 -1.2211 5.4306 20 1 10.2346 -1.3155 5.2855 21 1 12.3390 -2.4551 4.8956 22 1 12.0569 -1.0703 6.8665 23 6 12.0724 4.0659 4.6235 24 8 13.4398 3.9238 5.0580 25 6 13.7786 3.0303 3.9784 26 6 5.5689 0.6096 -0.0064 27 6 4.1997 0.4259 -0.0002 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2285 3.6643 0.0007 34 1 5.6692 3.9826 0.0012 35 1 8.0667 1.2509 -0.5152 36 1 7.8335 3.0155 -0.5139 37 1 7.6199 2.9856 1.9564 38 1 7.8531 1.2210 1.9551 39 1 12.1429 1.7858 1.9945 40 1 11.9109 3.5506 1.9946 41 1 13.5183 -0.7928 3.2801 42 1 11.9146 4.8887 3.9262 43 1 11.3472 4.0491 5.4370 44 1 14.4065 2.1919 4.2803 45 1 14.1415 3.5367 3.0841 46 1 6.2281 -0.2459 -0.0120 47 1 3.7885 -0.5726 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646889745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:42 Heat of formation + Delta-G solvation = -140.555065 kcal Electronic energy + Delta-G solvation = -27904.245900 eV Core-core repulsion = 23824.830401 eV Total energy + Delta-G solvation = -4079.415499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 9.60 seconds Orbital eigenvalues (eV) -41.54724 -41.12408 -40.75590 -38.85221 -37.37205 -34.88452 -34.71149 -32.64701 -31.89824 -31.79182 -30.00553 -27.38488 -27.12694 -26.37735 -25.23954 -24.76910 -22.97509 -22.04037 -21.26054 -20.84590 -19.22603 -18.59607 -18.27714 -17.59206 -17.33216 -17.02735 -16.99884 -16.75189 -16.32295 -16.19403 -16.06579 -15.65209 -15.38560 -15.00959 -14.45230 -14.41657 -14.33014 -14.14145 -13.89210 -13.59853 -13.58037 -13.37722 -13.22880 -12.82993 -12.65180 -12.62476 -12.58325 -12.33565 -12.31940 -12.08281 -11.82143 -11.74871 -11.60947 -11.57801 -11.26750 -11.21803 -10.89310 -10.69015 -10.19463 -9.94377 -9.04856 -8.17662 -6.25473 0.39878 0.41884 1.33589 1.43571 1.43906 1.51242 1.96798 2.27839 2.41739 2.79354 3.01636 3.23476 3.66570 3.81742 3.95207 4.01935 4.03354 4.05388 4.07903 4.21877 4.29193 4.32575 4.36890 4.44006 4.46637 4.49309 4.50347 4.58562 4.62320 4.65034 4.79604 4.90145 4.91045 4.93955 5.11253 5.15937 5.16425 5.20818 5.24115 5.33778 5.41317 5.48309 5.52074 5.71049 5.73543 5.78177 5.84535 6.24233 6.47123 6.72712 6.93108 7.40009 8.89239 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002270 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.797579 B =12334.327502 C =13316.674395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.333 6.333 4 C 0.113 3.887 5 C -0.161 4.161 6 C -0.075 4.075 7 C -0.124 4.124 8 C -0.055 4.055 9 C -0.099 4.099 10 C 0.447 3.553 11 O -0.553 6.553 12 O -0.343 6.343 13 C 0.095 3.905 14 C 0.015 3.985 15 C -0.499 4.499 16 H 0.059 0.941 17 C 0.024 3.976 18 N -0.911 5.911 19 Si 0.951 3.049 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.038 3.962 24 O -0.404 6.404 25 C 0.054 3.946 26 C -0.082 4.082 27 C -0.211 4.211 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.263 0.737 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.134 0.866 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.649 1.009 -8.487 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.068 3.932 5 C -0.179 4.179 6 C -0.093 4.093 7 C -0.124 4.124 8 C -0.092 4.092 9 C -0.137 4.137 10 C 0.293 3.707 11 O -0.445 6.445 12 O -0.258 6.258 13 C 0.021 3.979 14 C 0.014 3.986 15 C -0.536 4.536 16 H 0.077 0.923 17 C -0.176 4.176 18 N -0.549 5.549 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.039 4.039 24 O -0.323 6.323 25 C -0.023 4.023 26 C -0.100 4.100 27 C -0.229 4.229 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.152 0.848 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.348 1.131 -8.633 23.984 hybrid contribution 0.379 -1.263 0.095 1.322 sum -21.969 -0.133 -8.538 23.570 Atomic orbital electron populations 1.21804 0.91507 1.04113 1.03211 1.23038 0.96896 0.80917 1.02131 1.86049 1.18918 1.31107 1.88686 1.19223 0.82597 0.94656 0.96761 1.20641 0.95527 0.95203 1.06557 1.21104 0.91903 0.99489 0.96759 1.19711 0.94720 0.93647 1.04342 1.20223 0.90911 1.03971 0.94141 1.21463 0.84992 1.06911 1.00293 1.24588 0.92933 0.71714 0.81513 1.90587 1.71470 1.48225 1.34180 1.86547 1.23833 1.81438 1.34006 1.23076 0.75783 0.98972 1.00107 1.21195 0.91918 0.94207 0.91255 1.20735 1.30868 0.91045 1.10978 0.92326 1.25605 0.94598 1.01290 0.96137 1.69981 1.30600 1.23443 1.30871 0.85714 0.79002 0.78673 0.78962 1.19322 1.21151 1.19848 1.24193 0.84182 0.96993 0.98486 1.89462 1.26958 1.68487 1.47408 1.23830 0.99058 0.90942 0.88517 1.21092 0.94720 0.97238 0.96979 1.21406 0.94089 0.98767 1.08654 0.91754 0.88352 0.91871 0.91249 0.91400 0.84187 0.83480 0.91158 0.90065 0.85559 0.87032 0.93079 0.93201 0.92772 0.89968 0.89649 0.90733 0.91420 0.84825 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16 2 C 0.04 0.56 5.46 71.98 0.39 0.95 16 3 O -0.33 -6.36 10.14 -92.52 -0.94 -7.30 16 4 C 0.11 2.27 6.69 22.51 0.15 2.42 16 5 C -0.16 -3.07 9.99 22.37 0.22 -2.84 16 6 C -0.07 -1.38 9.69 22.25 0.22 -1.17 16 7 C -0.12 -2.53 5.14 -19.85 -0.10 -2.63 16 8 C -0.06 -1.26 4.63 29.85 0.14 -1.12 16 9 C -0.10 -2.53 5.79 29.85 0.17 -2.36 16 10 C 0.45 16.47 7.96 71.23 0.57 17.04 16 11 O -0.55 -23.13 15.73 21.97 0.35 -22.78 16 12 O -0.34 -14.66 9.82 -51.46 -0.51 -15.16 16 13 C 0.09 4.37 4.67 71.98 0.34 4.70 16 14 C 0.01 0.71 0.62 -52.23 -0.03 0.68 16 15 C -0.50 -26.24 7.92 25.60 0.20 -26.03 16 16 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 17 C 0.02 1.26 5.25 84.66 0.44 1.70 16 18 N -0.91 -49.92 11.31 21.45 0.24 -49.68 16 19 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.04 1.57 8.35 72.27 0.60 2.18 16 24 O -0.40 -18.88 12.40 -148.98 -1.85 -20.73 16 25 C 0.05 2.52 7.91 72.27 0.57 3.09 16 26 C -0.08 -1.63 9.69 22.25 0.22 -1.41 16 27 C -0.21 -3.92 9.04 22.36 0.20 -3.72 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 33 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.07 1.75 8.04 -2.38 -0.02 1.73 16 36 H 0.08 1.85 8.04 -2.39 -0.02 1.83 16 37 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 38 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.05 2.68 7.21 -2.39 -0.02 2.66 16 40 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 41 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.08 2.93 8.03 -2.38 -0.02 2.91 16 43 H 0.09 3.39 8.09 -2.39 -0.02 3.37 16 44 H 0.07 3.86 7.36 -2.38 -0.02 3.85 16 45 H 0.07 2.86 8.10 -2.39 -0.02 2.84 16 46 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 47 H 0.14 2.05 6.30 -2.91 -0.02 2.03 16 Total: -1.00 -65.11 394.90 5.32 -59.79 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.95 Total: 20.62 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 5.04 Total: -9.12 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.24 Total: -49.68 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: -2.95 Total: -65.96 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.11 5.32 -59.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.770 kcal (2) G-P(sol) polarization free energy of solvation -65.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.60 seconds