Wall clock time and date at job start Tue Mar 31 2020 19:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46773 * 2 1 4 4 O 1.42899 * 109.47638 * 119.99999 * 2 1 3 5 5 C 1.42898 * 114.00124 * 270.00454 * 4 2 1 6 6 C 1.52998 * 109.47366 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47327 * 179.97438 * 6 5 4 8 8 C 1.38228 * 120.00132 * 269.72926 * 7 6 5 9 9 C 1.38240 * 119.99681 * 179.76755 * 8 7 6 10 10 C 1.38237 * 119.99760 * 0.48276 * 9 8 7 11 11 C 1.38234 * 120.00384 * 359.79463 * 10 9 8 12 12 C 1.38234 * 119.99529 * 359.95376 * 11 10 9 13 13 C 1.50704 * 109.47168 * 240.00276 * 2 1 3 14 14 O 1.20821 * 119.99720 * 244.99609 * 13 2 1 15 15 O 1.34228 * 119.99527 * 64.99735 * 13 2 1 16 16 C 1.45208 * 116.99385 * 180.02562 * 15 13 2 17 17 C 1.52997 * 109.46719 * 179.97438 * 16 15 13 18 18 C 1.50697 * 112.99985 * 53.52329 * 17 16 15 19 19 H 1.08008 * 120.00116 * 245.39022 * 18 17 16 20 20 C 1.37880 * 120.00309 * 65.39566 * 18 17 16 21 21 N 1.31513 * 119.99883 * 6.60241 * 20 18 17 22 22 Si 1.86794 * 120.00175 * 186.61354 * 20 18 17 23 23 H 1.48496 * 109.47597 * 89.99188 * 22 20 18 24 24 H 1.48499 * 109.47217 * 209.99600 * 22 20 18 25 25 H 1.48506 * 109.47117 * 329.99410 * 22 20 18 26 26 C 1.54027 * 113.81883 * 281.53301 * 17 16 15 27 27 O 1.44184 * 85.52123 * 223.19818 * 26 17 16 28 28 C 1.44175 * 93.33627 * 24.19540 * 27 26 17 29 29 H 1.09006 * 109.46821 * 299.99531 * 1 2 3 30 30 H 1.08995 * 109.47301 * 60.00268 * 1 2 3 31 31 H 1.09005 * 109.46773 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46892 * 299.99589 * 5 4 2 33 33 H 1.08997 * 109.47645 * 59.99536 * 5 4 2 34 34 H 1.09001 * 109.47402 * 300.00189 * 6 5 4 35 35 H 1.09007 * 109.46795 * 59.99608 * 6 5 4 36 36 H 1.08001 * 120.00387 * 0.02562 * 8 7 6 37 37 H 1.08001 * 120.00098 * 180.25414 * 9 8 7 38 38 H 1.08006 * 119.99542 * 179.77199 * 10 9 8 39 39 H 1.08000 * 120.00036 * 179.97438 * 11 10 9 40 40 H 1.07999 * 119.99606 * 180.02562 * 12 11 10 41 41 H 1.08996 * 109.46918 * 300.00170 * 16 15 13 42 42 H 1.08999 * 109.47052 * 59.99632 * 16 15 13 43 43 H 0.97001 * 120.00125 * 180.02562 * 21 20 18 44 44 H 1.09006 * 113.86808 * 337.34795 * 26 17 16 45 45 H 1.09000 * 113.86770 * 109.05441 * 26 17 16 46 46 H 1.09008 * 113.86343 * 221.66588 * 28 27 26 47 47 H 1.08998 * 113.98898 * 89.97070 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 0.1829 2.2940 6 6 2.7081 -0.6408 3.4791 7 6 2.9129 0.2627 4.6678 8 6 4.1373 0.8713 4.8704 9 6 4.3237 1.7038 5.9582 10 6 3.2886 1.9196 6.8487 11 6 2.0659 1.3064 6.6492 12 6 1.8780 0.4780 5.5586 13 6 2.0323 -0.7104 -1.2305 14 8 2.6507 -1.7427 -1.1220 15 8 1.7928 -0.1961 -2.4470 16 6 2.3059 -0.9343 -3.5874 17 6 1.9370 -0.2000 -4.8779 18 6 2.3687 1.2438 -4.8780 19 1 1.6274 2.0291 -4.8945 20 6 3.7101 1.5623 -4.8571 21 7 4.6132 0.6128 -4.9681 22 14 4.2445 3.3424 -4.6709 23 1 4.3999 3.6645 -3.2296 24 1 5.5410 3.5454 -5.3660 25 1 3.2175 4.2328 -5.2690 26 6 0.4776 -0.4157 -5.3208 27 8 1.0218 -0.5706 -6.6470 28 6 2.3203 -0.9640 -6.1595 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.9320 0.9514 2.0449 33 1 1.2539 0.6546 2.5589 34 1 1.9760 -1.4090 3.7281 35 1 3.6543 -1.1128 3.2145 36 1 4.9471 0.6999 4.1767 37 1 5.2791 2.1827 6.1143 38 1 3.4354 2.5671 7.7006 39 1 1.2575 1.4747 7.3452 40 1 0.9227 -0.0008 5.4025 41 1 3.3904 -1.0130 -3.5109 42 1 1.8692 -1.9328 -3.6002 43 1 5.5569 0.8368 -4.9531 44 1 0.0249 -1.3232 -4.9212 45 1 -0.1537 0.4650 -5.2034 46 1 3.1507 -0.5179 -6.7070 47 1 2.4327 -2.0386 -6.0154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646889808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:23 Heat of formation + Delta-G solvation = -124.008838 kcal Electronic energy + Delta-G solvation = -28330.330450 eV Core-core repulsion = 24251.632450 eV Total energy + Delta-G solvation = -4078.698001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 13.30 seconds Orbital eigenvalues (eV) -40.03467 -39.59929 -39.13930 -37.90408 -35.57531 -33.87475 -32.93558 -31.50667 -31.17067 -29.87860 -28.58909 -25.68286 -25.36445 -24.78225 -23.97978 -23.19639 -22.85473 -21.21027 -20.22788 -19.02070 -17.31311 -17.18222 -16.71590 -16.44746 -16.01375 -15.74361 -15.60624 -15.27444 -14.98558 -14.76024 -14.59726 -14.36644 -14.18824 -13.73264 -13.68195 -13.43255 -13.19614 -12.85658 -12.64987 -12.39055 -12.22933 -11.99873 -11.88773 -11.61201 -11.56082 -11.32574 -11.20231 -11.09602 -11.01218 -10.78360 -10.48475 -10.08851 -9.95454 -9.82798 -9.42867 -9.37874 -9.20186 -9.07594 -9.00489 -8.78038 -8.31813 -6.19629 -4.22339 1.03767 1.11674 2.77126 2.83253 3.23607 3.30993 3.33995 3.48964 3.97120 4.31506 4.55034 4.62414 4.74703 4.85298 4.85932 4.87746 4.90382 5.02130 5.10992 5.15842 5.21971 5.24319 5.25952 5.27793 5.57953 5.60766 5.68030 5.72636 5.80516 5.87737 5.91907 6.04043 6.11521 6.17585 6.17998 6.23165 6.29609 6.36478 6.36669 6.54041 6.71979 6.92915 7.03168 7.11471 7.26893 7.32691 7.36708 7.76628 8.15934 8.47444 8.74721 9.41255 10.88863 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.002462 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.605206 B =11371.663267 C =12449.041431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 H 0.097 0.903 4 O -0.361 6.361 5 C 0.067 3.933 6 C -0.079 4.079 7 C -0.080 4.080 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.125 4.125 11 C -0.120 4.120 12 C -0.115 4.115 13 C 0.452 3.548 14 O -0.504 6.504 15 O -0.327 6.327 16 C 0.084 3.916 17 C 0.033 3.967 18 C -0.485 4.485 19 H 0.066 0.934 20 C 0.066 3.934 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.028 3.972 27 O -0.388 6.388 28 C 0.050 3.950 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.265 0.735 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 1.148 20.494 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.114 0.886 4 O -0.280 6.280 5 C -0.010 4.010 6 C -0.117 4.117 7 C -0.080 4.080 8 C -0.132 4.132 9 C -0.137 4.137 10 C -0.143 4.143 11 C -0.138 4.138 12 C -0.133 4.133 13 C 0.294 3.706 14 O -0.393 6.393 15 O -0.242 6.242 16 C 0.010 3.990 17 C 0.032 3.968 18 C -0.523 4.523 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.049 4.049 27 O -0.307 6.307 28 C -0.027 4.027 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.546 0.647 20.194 20.709 hybrid contribution 0.625 1.002 0.353 1.233 sum -3.921 1.649 20.547 20.982 Atomic orbital electron populations 1.22189 0.92801 1.03702 1.03707 1.21371 0.95334 0.96148 0.83237 0.88554 1.87970 1.86776 1.34376 1.18866 1.22554 0.99816 0.92866 0.85768 1.20467 1.03473 0.96965 0.90771 1.19758 0.93990 0.98062 0.96208 1.21162 0.97079 0.97026 0.97906 1.21180 0.99141 0.98477 0.94894 1.21175 0.93542 1.00055 0.99497 1.21154 0.97439 0.97409 0.97821 1.21107 0.98681 0.98802 0.94681 1.23163 0.77629 0.83987 0.85853 1.90618 1.37425 1.23704 1.87518 1.86511 1.71146 1.52638 1.13939 1.23481 1.00472 0.91871 0.83154 1.21123 0.89964 0.97141 0.88581 1.20549 0.91858 0.89136 1.50747 0.91552 1.24963 0.96509 0.97787 0.94414 1.69887 1.01231 1.32382 1.49064 0.86480 0.78084 0.84618 0.78231 1.20596 1.21180 1.19651 1.24095 0.98355 0.98910 0.83515 1.89495 1.26669 1.88806 1.25719 1.23919 0.86505 0.96210 0.96047 0.91325 0.89638 0.91324 0.92809 0.92817 0.89881 0.89756 0.85782 0.85997 0.86178 0.86057 0.85901 0.89681 0.94396 0.92538 0.92846 0.90371 0.88197 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 9.50 37.16 0.35 -1.67 16 2 C 0.10 1.50 3.24 -27.88 -0.09 1.41 16 3 H 0.10 1.33 7.79 -51.93 -0.40 0.92 16 4 O -0.36 -5.47 9.53 -55.14 -0.53 -6.00 16 5 C 0.07 0.76 5.73 37.16 0.21 0.97 16 6 C -0.08 -0.80 5.72 -27.88 -0.16 -0.96 16 7 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 8 C -0.11 -1.06 9.70 -39.58 -0.38 -1.44 16 9 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 10 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 11 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 12 C -0.11 -0.98 9.70 -39.58 -0.38 -1.37 16 13 C 0.45 9.09 7.29 36.01 0.26 9.35 16 14 O -0.50 -11.62 16.25 -25.46 -0.41 -12.03 16 15 O -0.33 -7.11 9.82 -39.25 -0.39 -7.50 16 16 C 0.08 1.94 4.67 37.16 0.17 2.12 16 17 C 0.03 0.78 0.62 -154.58 -0.10 0.68 16 18 C -0.49 -12.65 7.92 -34.44 -0.27 -12.92 16 19 H 0.07 1.73 7.82 -52.48 -0.41 1.32 16 20 C 0.07 1.73 5.25 -17.82 -0.09 1.64 16 21 N -0.89 -23.95 11.31 55.43 0.63 -23.32 16 22 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.03 0.60 8.35 37.60 0.31 0.92 16 27 O -0.39 -9.16 12.40 -35.23 -0.44 -9.59 16 28 C 0.05 1.18 7.91 37.61 0.30 1.47 16 29 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.05 0.52 7.87 -51.93 -0.41 0.11 16 34 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.08 2.20 7.21 -51.93 -0.37 1.83 16 42 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.05 1.02 8.03 -51.93 -0.42 0.60 16 45 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 46 H 0.10 2.52 7.36 -51.92 -0.38 2.14 16 47 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -30.85 398.37 -9.17 -40.02 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.42 Total: 2.07 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.60 Total: -5.21 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.63 Total: -23.32 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.76 Total: -35.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.85 -9.17 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.993 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.31 seconds