Wall clock time and date at job start Tue Mar 31 2020 19:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46773 * 2 1 4 4 O 1.42899 * 109.47638 * 119.99999 * 2 1 3 5 5 C 1.42898 * 114.00124 * 270.00454 * 4 2 1 6 6 C 1.52998 * 109.47366 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47327 * 179.97438 * 6 5 4 8 8 C 1.38228 * 120.00132 * 269.72926 * 7 6 5 9 9 C 1.38240 * 119.99681 * 179.76755 * 8 7 6 10 10 C 1.38237 * 119.99760 * 0.48276 * 9 8 7 11 11 C 1.38234 * 120.00384 * 359.79463 * 10 9 8 12 12 C 1.38234 * 119.99529 * 359.95376 * 11 10 9 13 13 C 1.50704 * 109.47168 * 240.00276 * 2 1 3 14 14 O 1.20821 * 119.99720 * 244.99609 * 13 2 1 15 15 O 1.34228 * 119.99527 * 64.99735 * 13 2 1 16 16 C 1.45208 * 116.99385 * 180.02562 * 15 13 2 17 17 C 1.52997 * 109.46719 * 179.97438 * 16 15 13 18 18 C 1.50697 * 112.99985 * 53.52329 * 17 16 15 19 19 H 1.08008 * 120.00116 * 245.39022 * 18 17 16 20 20 C 1.37880 * 120.00309 * 65.39566 * 18 17 16 21 21 N 1.31513 * 119.99883 * 6.60241 * 20 18 17 22 22 Si 1.86794 * 120.00175 * 186.61354 * 20 18 17 23 23 H 1.48496 * 109.47597 * 89.99188 * 22 20 18 24 24 H 1.48499 * 109.47217 * 209.99600 * 22 20 18 25 25 H 1.48506 * 109.47117 * 329.99410 * 22 20 18 26 26 C 1.54027 * 113.81883 * 281.53301 * 17 16 15 27 27 O 1.44184 * 85.52123 * 223.19818 * 26 17 16 28 28 C 1.44175 * 93.33627 * 24.19540 * 27 26 17 29 29 H 1.09006 * 109.46821 * 299.99531 * 1 2 3 30 30 H 1.08995 * 109.47301 * 60.00268 * 1 2 3 31 31 H 1.09005 * 109.46773 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46892 * 299.99589 * 5 4 2 33 33 H 1.08997 * 109.47645 * 59.99536 * 5 4 2 34 34 H 1.09001 * 109.47402 * 300.00189 * 6 5 4 35 35 H 1.09007 * 109.46795 * 59.99608 * 6 5 4 36 36 H 1.08001 * 120.00387 * 0.02562 * 8 7 6 37 37 H 1.08001 * 120.00098 * 180.25414 * 9 8 7 38 38 H 1.08006 * 119.99542 * 179.77199 * 10 9 8 39 39 H 1.08000 * 120.00036 * 179.97438 * 11 10 9 40 40 H 1.07999 * 119.99606 * 180.02562 * 12 11 10 41 41 H 1.08996 * 109.46918 * 300.00170 * 16 15 13 42 42 H 1.08999 * 109.47052 * 59.99632 * 16 15 13 43 43 H 0.97001 * 120.00125 * 180.02562 * 21 20 18 44 44 H 1.09006 * 113.86808 * 337.34795 * 26 17 16 45 45 H 1.09000 * 113.86770 * 109.05441 * 26 17 16 46 46 H 1.09008 * 113.86343 * 221.66588 * 28 27 26 47 47 H 1.08998 * 113.98898 * 89.97070 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 0.1829 2.2940 6 6 2.7081 -0.6408 3.4791 7 6 2.9129 0.2627 4.6678 8 6 4.1373 0.8713 4.8704 9 6 4.3237 1.7038 5.9582 10 6 3.2886 1.9196 6.8487 11 6 2.0659 1.3064 6.6492 12 6 1.8780 0.4780 5.5586 13 6 2.0323 -0.7104 -1.2305 14 8 2.6507 -1.7427 -1.1220 15 8 1.7928 -0.1961 -2.4470 16 6 2.3059 -0.9343 -3.5874 17 6 1.9370 -0.2000 -4.8779 18 6 2.3687 1.2438 -4.8780 19 1 1.6274 2.0291 -4.8945 20 6 3.7101 1.5623 -4.8571 21 7 4.6132 0.6128 -4.9681 22 14 4.2445 3.3424 -4.6709 23 1 4.3999 3.6645 -3.2296 24 1 5.5410 3.5454 -5.3660 25 1 3.2175 4.2328 -5.2690 26 6 0.4776 -0.4157 -5.3208 27 8 1.0218 -0.5706 -6.6470 28 6 2.3203 -0.9640 -6.1595 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.9320 0.9514 2.0449 33 1 1.2539 0.6546 2.5589 34 1 1.9760 -1.4090 3.7281 35 1 3.6543 -1.1128 3.2145 36 1 4.9471 0.6999 4.1767 37 1 5.2791 2.1827 6.1143 38 1 3.4354 2.5671 7.7006 39 1 1.2575 1.4747 7.3452 40 1 0.9227 -0.0008 5.4025 41 1 3.3904 -1.0130 -3.5109 42 1 1.8692 -1.9328 -3.6002 43 1 5.5569 0.8368 -4.9531 44 1 0.0249 -1.3232 -4.9212 45 1 -0.1537 0.4650 -5.2034 46 1 3.1507 -0.5179 -6.7070 47 1 2.4327 -2.0386 -6.0154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646889808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:01 Heat of formation + Delta-G solvation = -139.711813 kcal Electronic energy + Delta-G solvation = -28331.011383 eV Core-core repulsion = 24251.632450 eV Total energy + Delta-G solvation = -4079.378933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -41.64617 -40.90472 -40.25893 -39.08052 -37.27550 -34.90958 -34.66436 -32.64532 -31.77465 -31.65210 -29.36492 -27.47390 -27.14215 -26.44414 -25.25313 -24.28069 -23.46528 -21.99843 -21.63255 -20.88361 -18.75602 -18.47087 -18.05113 -17.53012 -17.49652 -17.22330 -16.83958 -16.64869 -16.27149 -16.18593 -15.93031 -15.90149 -15.70075 -14.93160 -14.64367 -14.29404 -14.12215 -13.97894 -13.90314 -13.65487 -13.59557 -13.52356 -13.17579 -12.94181 -12.87128 -12.61271 -12.42586 -12.34737 -12.21760 -11.95717 -11.82739 -11.80377 -11.73518 -11.29865 -11.25039 -10.92801 -10.71833 -10.68614 -10.19958 -9.82344 -9.65315 -8.18675 -6.26751 0.39609 0.49720 1.19162 1.41395 1.43556 1.47328 1.52870 2.40745 2.70181 2.96016 3.01236 3.22802 3.58302 3.83173 3.87181 3.92425 3.96512 4.10259 4.17091 4.18532 4.25018 4.26400 4.31262 4.40484 4.45235 4.48811 4.58065 4.60046 4.64189 4.68960 4.72649 4.80041 4.90991 4.95789 5.13313 5.16751 5.18013 5.19132 5.22361 5.47629 5.50506 5.57227 5.63000 5.64689 5.70572 5.72961 5.97832 6.11861 6.22764 6.72210 6.84006 7.39150 8.88444 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.002462 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.605206 B =11371.663267 C =12449.041431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.103 3.897 3 H 0.113 0.887 4 O -0.384 6.384 5 C 0.064 3.936 6 C -0.074 4.074 7 C -0.092 4.092 8 C -0.132 4.132 9 C -0.129 4.129 10 C -0.129 4.129 11 C -0.125 4.125 12 C -0.122 4.122 13 C 0.446 3.554 14 O -0.541 6.541 15 O -0.332 6.332 16 C 0.094 3.906 17 C 0.017 3.983 18 C -0.498 4.498 19 H 0.062 0.938 20 C 0.022 3.978 21 N -0.912 5.912 22 Si 0.952 3.048 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.266 1.266 26 C 0.039 3.961 27 O -0.402 6.402 28 C 0.053 3.947 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.263 0.737 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 2.399 22.421 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.130 0.870 4 O -0.304 6.304 5 C -0.012 4.012 6 C -0.111 4.111 7 C -0.092 4.092 8 C -0.150 4.150 9 C -0.147 4.147 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.140 4.140 13 C 0.290 3.710 14 O -0.432 6.432 15 O -0.247 6.247 16 C 0.020 3.980 17 C 0.016 3.984 18 C -0.535 4.535 19 H 0.080 0.920 20 C -0.178 4.178 21 N -0.550 5.550 22 Si 0.778 3.222 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 C -0.038 4.038 27 O -0.321 6.321 28 C -0.024 4.024 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.252 1.910 22.130 23.075 hybrid contribution 1.161 0.596 -0.176 1.317 sum -5.092 2.506 21.954 22.676 Atomic orbital electron populations 1.22186 0.89956 1.04015 1.05434 1.21519 0.97235 0.95699 0.81142 0.86991 1.87948 1.87069 1.35809 1.19524 1.22762 1.01014 0.92644 0.84800 1.20399 1.02839 0.97120 0.90753 1.19746 0.94564 0.98542 0.96378 1.21305 0.97253 0.97816 0.98622 1.21429 1.00175 0.98342 0.94705 1.21511 0.93328 1.00001 0.99861 1.21483 0.98143 0.96768 0.97850 1.21332 0.98986 0.98981 0.94671 1.24297 0.76541 0.83731 0.86465 1.90594 1.39151 1.25551 1.87855 1.86513 1.71088 1.52680 1.14433 1.23172 0.98442 0.92594 0.83793 1.21198 0.92052 0.96269 0.88843 1.20792 0.91943 0.90287 1.50516 0.91981 1.25635 0.96694 1.01095 0.94349 1.69997 1.01204 1.33873 1.49900 0.85633 0.77619 0.80736 0.78218 1.20157 1.21256 1.18989 1.24201 0.96970 1.00694 0.81909 1.89468 1.26618 1.89024 1.27025 1.23826 0.85895 0.97135 0.95527 0.88059 0.89402 0.91726 0.93051 0.90477 0.89370 0.91146 0.86021 0.84605 0.84051 0.83835 0.84495 0.93129 0.93178 0.92811 0.90017 0.89357 0.90683 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.50 71.98 0.68 -2.76 16 2 C 0.10 3.00 3.24 29.85 0.10 3.10 16 3 H 0.11 2.89 7.79 -2.38 -0.02 2.87 16 4 O -0.38 -11.29 9.53 -129.95 -1.24 -12.53 16 5 C 0.06 1.36 5.73 71.98 0.41 1.77 16 6 C -0.07 -1.45 5.72 29.85 0.17 -1.28 16 7 C -0.09 -1.67 5.13 -19.87 -0.10 -1.77 16 8 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 9 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 10 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 11 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 12 C -0.12 -1.85 9.70 22.27 0.22 -1.64 16 13 C 0.45 17.89 7.29 71.24 0.52 18.41 16 14 O -0.54 -25.40 16.25 28.40 0.46 -24.94 16 15 O -0.33 -14.36 9.82 -51.40 -0.50 -14.87 16 16 C 0.09 4.39 4.67 71.98 0.34 4.73 16 17 C 0.02 0.81 0.62 -52.23 -0.03 0.77 16 18 C -0.50 -25.93 7.92 25.60 0.20 -25.73 16 19 H 0.06 3.21 7.82 -2.91 -0.02 3.19 16 20 C 0.02 1.18 5.25 84.66 0.44 1.62 16 21 N -0.91 -50.14 11.31 21.45 0.24 -49.90 16 22 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.04 1.58 8.35 72.27 0.60 2.19 16 27 O -0.40 -18.61 12.40 -148.98 -1.85 -20.46 16 28 C 0.05 2.50 7.91 72.28 0.57 3.07 16 29 H 0.10 1.55 7.87 -2.38 -0.02 1.53 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.05 1.11 8.09 -2.38 -0.02 1.09 16 33 H 0.08 1.28 7.87 -2.39 -0.02 1.26 16 34 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 35 H 0.07 1.54 8.08 -2.38 -0.02 1.52 16 36 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.05 2.70 7.21 -2.39 -0.02 2.68 16 42 H 0.05 2.17 8.04 -2.39 -0.02 2.15 16 43 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.08 2.89 8.03 -2.38 -0.02 2.87 16 45 H 0.09 3.42 8.09 -2.39 -0.02 3.40 16 46 H 0.07 3.88 7.36 -2.38 -0.02 3.86 16 47 H 0.07 2.84 8.10 -2.39 -0.02 2.82 16 Total: -1.00 -66.87 398.37 5.10 -61.77 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.95 Total: 21.10 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.01 Total: -4.40 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.24 Total: -49.90 kcal Atomic # 8 Polarization: -69.66 SS G_CDS: -3.13 Total: -72.79 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -66.87 5.10 -61.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646889808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.942 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds