Wall clock time and date at job start Tue Mar 31 2020 23:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48500 * 109.47461 * 270.00405 * 3 2 1 5 5 H 1.48502 * 109.47155 * 30.00175 * 3 2 1 6 6 H 1.48503 * 109.47404 * 150.00395 * 3 2 1 7 7 C 1.38653 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99843 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00227 * 179.97438 * 7 2 1 10 10 C 1.35753 * 117.00007 * 185.04846 * 9 7 2 11 11 C 1.38878 * 120.06696 * 354.47169 * 10 9 7 12 12 C 1.38099 * 119.92575 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.07177 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.92942 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47040 * 90.00001 * 14 13 12 16 16 C 1.46852 * 110.99671 * 169.99746 * 15 14 13 17 17 C 1.53042 * 109.51839 * 174.16007 * 16 15 14 18 18 C 1.53116 * 109.27913 * 59.18083 * 17 16 15 19 19 O 1.42906 * 109.52023 * 182.44092 * 18 17 16 20 20 C 1.42901 * 113.99403 * 269.68072 * 19 18 17 21 21 C 1.50706 * 109.46977 * 180.02562 * 20 19 18 22 22 N 1.34772 * 120.00190 * 180.02562 * 21 20 19 23 23 O 1.21287 * 119.99558 * 359.97438 * 21 20 19 24 24 C 1.53113 * 109.16128 * 302.34027 * 18 17 16 25 25 C 1.46844 * 111.00072 * 45.79014 * 15 14 13 26 26 C 1.38298 * 120.13907 * 0.27358 * 13 12 11 27 27 C 1.38102 * 120.06555 * 359.49213 * 26 13 12 28 28 H 0.97001 * 119.99462 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.03958 * 359.94648 * 11 10 9 30 30 H 1.08002 * 119.96567 * 179.97438 * 12 11 10 31 31 H 1.08997 * 109.47529 * 329.99701 * 14 13 12 32 32 H 1.09003 * 109.46597 * 209.99448 * 14 13 12 33 33 H 1.08997 * 109.46569 * 294.17233 * 16 15 14 34 34 H 1.08993 * 109.46280 * 54.14675 * 16 15 14 35 35 H 1.09002 * 109.49705 * 179.11952 * 17 16 15 36 36 H 1.09001 * 109.50364 * 299.23279 * 17 16 15 37 37 H 1.09005 * 109.52346 * 62.25149 * 18 17 16 38 38 H 1.09003 * 109.47393 * 299.99944 * 20 19 18 39 39 H 1.08994 * 109.47390 * 60.00355 * 20 19 18 40 40 H 0.97000 * 120.00127 * 359.97438 * 22 21 20 41 41 H 0.97007 * 119.99957 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.50938 * 297.71921 * 24 18 17 43 43 H 1.09002 * 109.53663 * 177.61317 * 24 18 17 44 44 H 1.08997 * 109.45945 * 305.85025 * 25 15 14 45 45 H 1.08994 * 109.46812 * 65.83418 * 25 15 14 46 46 H 1.07999 * 119.96621 * 179.72648 * 26 13 12 47 47 H 1.07999 * 120.03437 * 180.25063 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1080 11 6 3.2234 -3.5744 -0.0950 12 6 3.8533 -4.7985 -0.2045 13 6 5.2294 -4.8612 -0.3276 14 6 5.9134 -6.1987 -0.4475 15 7 6.0151 -6.5713 -1.8648 16 6 6.8797 -7.7454 -2.0394 17 6 6.8464 -8.1918 -3.5029 18 6 7.3285 -7.0429 -4.3929 19 8 7.2457 -7.4346 -5.7648 20 6 8.4330 -8.0525 -6.2653 21 6 8.2351 -8.4219 -7.7129 22 7 9.2291 -9.0218 -8.3973 23 8 7.1808 -8.1802 -8.2617 24 6 6.4413 -5.8176 -4.1563 25 6 6.4863 -5.4400 -2.6738 26 6 5.9795 -3.6993 -0.3357 27 6 5.3551 -2.4719 -0.2314 28 1 -0.4849 0.8401 0.0004 29 1 2.1488 -3.5261 0.0011 30 1 3.2706 -5.7078 -0.1940 31 1 5.3338 -6.9523 0.0856 32 1 6.9123 -6.1358 -0.0157 33 1 7.9018 -7.4885 -1.7612 34 1 6.5235 -8.5564 -1.4042 35 1 7.5004 -9.0538 -3.6353 36 1 5.8269 -8.4622 -3.7778 37 1 8.3613 -6.7984 -4.1446 38 1 9.2684 -7.3577 -6.1790 39 1 8.6466 -8.9511 -5.6866 40 1 10.0721 -9.2154 -7.9583 41 1 9.1016 -9.2598 -9.3290 42 1 5.4154 -6.0505 -4.4415 43 1 6.8051 -4.9830 -4.7556 44 1 5.8443 -4.5766 -2.4994 45 1 7.5102 -5.1940 -2.3929 46 1 7.0543 -3.7518 -0.4275 47 1 5.9411 -1.5648 -0.2419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647102700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:38 Heat of formation + Delta-G solvation = -79.859343 kcal Electronic energy + Delta-G solvation = -28065.386959 eV Core-core repulsion = 24020.896175 eV Total energy + Delta-G solvation = -4044.490784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.14199 -39.61310 -38.92664 -37.55808 -36.31462 -34.11769 -32.97506 -32.30637 -31.08319 -30.29761 -29.49799 -28.18514 -25.96407 -24.64375 -23.30749 -22.61275 -22.00555 -21.29460 -20.34562 -19.88445 -18.06353 -17.88181 -17.54511 -17.25653 -16.38238 -16.34832 -15.89874 -15.34829 -15.05353 -14.72871 -14.58257 -14.35150 -14.17581 -13.95758 -13.74203 -13.53874 -13.44022 -13.14960 -12.93872 -12.64979 -12.48339 -12.32572 -12.16633 -11.70630 -11.43966 -11.33849 -11.26178 -11.06063 -10.77099 -10.71303 -10.65793 -10.53168 -10.25474 -10.15937 -10.14774 -9.75484 -9.38808 -8.87202 -8.29853 -8.25393 -7.31302 -6.41865 -4.08446 2.09875 2.15831 2.21048 2.62488 3.21727 3.25750 3.39654 3.70464 3.93465 4.23242 4.39220 4.51116 4.57842 4.62443 4.69633 4.75353 4.83765 4.87742 5.00911 5.10171 5.17178 5.21737 5.34908 5.37917 5.44065 5.56460 5.64369 5.66471 5.70975 5.84525 5.86472 6.02572 6.08392 6.13045 6.22935 6.29827 6.33970 6.54913 6.71944 6.77678 6.95578 6.96722 7.06849 7.17942 7.25168 7.32335 7.59884 7.79959 7.83829 8.03143 8.93195 9.55057 10.65638 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002114 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.040165 B =13242.102789 C =14126.703428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.050 4.050 13 C -0.179 4.179 14 C 0.113 3.887 15 N -0.534 5.534 16 C 0.059 3.941 17 C -0.137 4.137 18 C 0.090 3.910 19 O -0.355 6.355 20 C 0.042 3.958 21 C 0.516 3.484 22 N -0.856 5.856 23 O -0.517 6.517 24 C -0.113 4.113 25 C 0.057 3.943 26 C -0.071 4.071 27 C -0.193 4.193 28 H 0.280 0.720 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.401 0.599 41 H 0.405 0.595 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.029 0.971 46 H 0.108 0.892 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.135 -18.442 -8.512 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.069 4.069 13 C -0.180 4.180 14 C -0.013 4.013 15 N -0.259 5.259 16 C -0.069 4.069 17 C -0.175 4.175 18 C 0.032 3.968 19 O -0.273 6.273 20 C -0.038 4.038 21 C 0.299 3.701 22 N -0.423 5.423 23 O -0.391 6.391 24 C -0.151 4.151 25 C -0.071 4.071 26 C -0.090 4.090 27 C -0.213 4.213 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.229 0.771 41 H 0.237 0.763 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.047 0.953 46 H 0.126 0.874 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.591 -17.915 -8.930 28.717 hybrid contribution 1.620 0.557 0.253 1.732 sum 22.211 -17.359 -8.677 29.495 Atomic orbital electron populations 1.69650 1.05560 1.28501 1.47849 1.24476 0.95036 0.98837 0.95679 0.86181 0.80288 0.81447 0.78970 1.19859 1.20788 1.18412 1.20775 0.76842 0.96666 1.52197 0.87553 1.83567 1.22677 1.25826 1.80092 1.19139 0.91690 0.85523 0.92723 1.21290 1.01176 0.91845 1.09808 1.20642 0.93343 0.96736 0.96157 1.19146 0.93907 0.93349 1.11644 1.20822 0.98076 0.94811 0.87622 1.62058 1.50210 1.05239 1.08348 1.22009 0.94708 0.94050 0.96164 1.22088 1.03389 0.97566 0.94482 1.22312 0.98979 0.95038 0.80466 1.88096 1.34055 1.78751 1.26365 1.22197 0.90193 0.99017 0.92401 1.20356 0.83876 0.77239 0.88607 1.43743 1.17606 1.64710 1.16238 1.90812 1.26169 1.51922 1.70184 1.21674 1.01421 0.95882 0.96126 1.22179 0.98692 0.94815 0.91408 1.20489 0.98054 0.91505 0.98944 1.20158 0.91996 0.97724 1.11393 0.91031 0.84935 0.87057 0.90553 0.94943 0.95217 0.90455 0.91813 0.89819 0.92442 0.90320 0.90349 0.77090 0.76329 0.89832 0.90892 0.88314 0.95323 0.87386 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 13.96 55.48 0.77 -24.62 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 21.67 28.62 -169.99 -4.86 16.81 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.39 -10.95 9.95 30.89 0.31 -10.64 16 8 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 9 O -0.22 -5.69 8.59 0.05 0.00 -5.69 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.18 -2.83 4.12 -104.58 -0.43 -3.26 16 14 C 0.11 1.43 5.43 -4.97 -0.03 1.40 16 15 N -0.53 -6.51 4.80 -236.11 -1.13 -7.65 16 16 C 0.06 0.56 5.42 -3.83 -0.02 0.54 16 17 C -0.14 -1.27 5.72 -26.65 -0.15 -1.42 16 18 C 0.09 0.89 2.68 -26.61 -0.07 0.82 16 19 O -0.35 -4.08 9.53 -55.14 -0.53 -4.60 16 20 C 0.04 0.31 6.23 36.01 0.22 0.53 16 21 C 0.52 4.62 8.18 -10.98 -0.09 4.53 16 22 N -0.86 -3.46 8.87 31.22 0.28 -3.18 16 23 O -0.52 -7.62 17.34 -14.36 -0.25 -7.87 16 24 C -0.11 -1.34 5.75 -26.65 -0.15 -1.49 16 25 C 0.06 0.70 4.58 -3.83 -0.02 0.68 16 26 C -0.07 -1.14 7.80 -39.61 -0.31 -1.45 16 27 C -0.19 -3.71 9.99 -39.39 -0.39 -4.11 16 28 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.13 3.00 5.64 -52.49 -0.30 2.70 16 30 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.38 8.02 -51.93 -0.42 -0.04 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.06 0.46 7.96 -51.93 -0.41 0.04 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.47 7.79 -51.93 -0.40 0.06 16 38 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 39 H 0.08 0.37 7.96 -51.93 -0.41 -0.05 16 40 H 0.40 0.19 8.83 -40.82 -0.36 -0.17 16 41 H 0.41 1.39 8.93 -40.82 -0.36 1.03 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.46 5.65 -51.93 -0.29 1.17 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 47 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -34.15 383.57 -9.20 -43.35 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.03 Total: 2.80 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.23 Total: -15.14 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.08 Total: -35.44 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.77 Total: -18.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.15 -9.20 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647102700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.511 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds