Wall clock time and date at job start Tue Mar 31 2020 23:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48500 * 109.47461 * 270.00405 * 3 2 1 5 5 H 1.48502 * 109.47155 * 30.00175 * 3 2 1 6 6 H 1.48503 * 109.47404 * 150.00395 * 3 2 1 7 7 C 1.38653 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99843 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00227 * 179.97438 * 7 2 1 10 10 C 1.35753 * 117.00007 * 185.04846 * 9 7 2 11 11 C 1.38878 * 120.06696 * 354.47169 * 10 9 7 12 12 C 1.38099 * 119.92575 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.07177 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.92942 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47040 * 90.00001 * 14 13 12 16 16 C 1.46852 * 110.99671 * 169.99746 * 15 14 13 17 17 C 1.53042 * 109.51839 * 174.16007 * 16 15 14 18 18 C 1.53116 * 109.27913 * 59.18083 * 17 16 15 19 19 O 1.42906 * 109.52023 * 182.44092 * 18 17 16 20 20 C 1.42901 * 113.99403 * 269.68072 * 19 18 17 21 21 C 1.50706 * 109.46977 * 180.02562 * 20 19 18 22 22 N 1.34772 * 120.00190 * 180.02562 * 21 20 19 23 23 O 1.21287 * 119.99558 * 359.97438 * 21 20 19 24 24 C 1.53113 * 109.16128 * 302.34027 * 18 17 16 25 25 C 1.46844 * 111.00072 * 45.79014 * 15 14 13 26 26 C 1.38298 * 120.13907 * 0.27358 * 13 12 11 27 27 C 1.38102 * 120.06555 * 359.49213 * 26 13 12 28 28 H 0.97001 * 119.99462 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.03958 * 359.94648 * 11 10 9 30 30 H 1.08002 * 119.96567 * 179.97438 * 12 11 10 31 31 H 1.08997 * 109.47529 * 329.99701 * 14 13 12 32 32 H 1.09003 * 109.46597 * 209.99448 * 14 13 12 33 33 H 1.08997 * 109.46569 * 294.17233 * 16 15 14 34 34 H 1.08993 * 109.46280 * 54.14675 * 16 15 14 35 35 H 1.09002 * 109.49705 * 179.11952 * 17 16 15 36 36 H 1.09001 * 109.50364 * 299.23279 * 17 16 15 37 37 H 1.09005 * 109.52346 * 62.25149 * 18 17 16 38 38 H 1.09003 * 109.47393 * 299.99944 * 20 19 18 39 39 H 1.08994 * 109.47390 * 60.00355 * 20 19 18 40 40 H 0.97000 * 120.00127 * 359.97438 * 22 21 20 41 41 H 0.97007 * 119.99957 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.50938 * 297.71921 * 24 18 17 43 43 H 1.09002 * 109.53663 * 177.61317 * 24 18 17 44 44 H 1.08997 * 109.45945 * 305.85025 * 25 15 14 45 45 H 1.08994 * 109.46812 * 65.83418 * 25 15 14 46 46 H 1.07999 * 119.96621 * 179.72648 * 26 13 12 47 47 H 1.07999 * 120.03437 * 180.25063 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1080 11 6 3.2234 -3.5744 -0.0950 12 6 3.8533 -4.7985 -0.2045 13 6 5.2294 -4.8612 -0.3276 14 6 5.9134 -6.1987 -0.4475 15 7 6.0151 -6.5713 -1.8648 16 6 6.8797 -7.7454 -2.0394 17 6 6.8464 -8.1918 -3.5029 18 6 7.3285 -7.0429 -4.3929 19 8 7.2457 -7.4346 -5.7648 20 6 8.4330 -8.0525 -6.2653 21 6 8.2351 -8.4219 -7.7129 22 7 9.2291 -9.0218 -8.3973 23 8 7.1808 -8.1802 -8.2617 24 6 6.4413 -5.8176 -4.1563 25 6 6.4863 -5.4400 -2.6738 26 6 5.9795 -3.6993 -0.3357 27 6 5.3551 -2.4719 -0.2314 28 1 -0.4849 0.8401 0.0004 29 1 2.1488 -3.5261 0.0011 30 1 3.2706 -5.7078 -0.1940 31 1 5.3338 -6.9523 0.0856 32 1 6.9123 -6.1358 -0.0157 33 1 7.9018 -7.4885 -1.7612 34 1 6.5235 -8.5564 -1.4042 35 1 7.5004 -9.0538 -3.6353 36 1 5.8269 -8.4622 -3.7778 37 1 8.3613 -6.7984 -4.1446 38 1 9.2684 -7.3577 -6.1790 39 1 8.6466 -8.9511 -5.6866 40 1 10.0721 -9.2154 -7.9583 41 1 9.1016 -9.2598 -9.3290 42 1 5.4154 -6.0505 -4.4415 43 1 6.8051 -4.9830 -4.7556 44 1 5.8443 -4.5766 -2.4994 45 1 7.5102 -5.1940 -2.3929 46 1 7.0543 -3.7518 -0.4275 47 1 5.9411 -1.5648 -0.2419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647102700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:34 Heat of formation + Delta-G solvation = -106.005089 kcal Electronic energy + Delta-G solvation = -28066.520724 eV Core-core repulsion = 24020.896175 eV Total energy + Delta-G solvation = -4045.624549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.41 seconds Orbital eigenvalues (eV) -41.13407 -40.71276 -40.05569 -38.74007 -37.53788 -34.71641 -34.53214 -33.80100 -32.00722 -31.76756 -30.73340 -28.88296 -27.59913 -26.04335 -24.24639 -23.69051 -23.42009 -21.89156 -21.72758 -20.74220 -19.79931 -19.07889 -18.58547 -18.20085 -17.11122 -16.99100 -16.74010 -16.69224 -16.41724 -15.89650 -15.69171 -15.62274 -15.40660 -15.31043 -15.07065 -14.83568 -14.37297 -14.26853 -14.20283 -14.08001 -13.78151 -13.63001 -13.20662 -12.94553 -12.80840 -12.45140 -12.40912 -12.36009 -12.09588 -11.98709 -11.87801 -11.76158 -11.39371 -11.26430 -10.99544 -10.89894 -10.71029 -10.44157 -9.77486 -9.23658 -8.88671 -8.50010 -6.22649 0.57627 0.62641 1.30794 1.35340 1.51499 1.58108 2.08895 2.27741 2.70298 2.96925 3.11914 3.14824 3.30576 3.80394 3.83794 3.97403 4.03106 4.05769 4.15809 4.17370 4.25493 4.32015 4.33761 4.38907 4.46141 4.54557 4.59244 4.65577 4.72430 4.83315 4.88059 4.95573 4.98071 5.03920 5.11729 5.24176 5.26481 5.35850 5.39461 5.57282 5.76466 5.83150 5.85372 5.91535 6.17217 6.18196 6.22808 6.32290 6.50811 6.84190 7.34428 7.58654 8.61687 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002114 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.040165 B =13242.102789 C =14126.703428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.398 4.398 8 H 0.079 0.921 9 O -0.245 6.245 10 C 0.120 3.880 11 C -0.240 4.240 12 C -0.057 4.057 13 C -0.149 4.149 14 C 0.116 3.884 15 N -0.552 5.552 16 C 0.061 3.939 17 C -0.133 4.133 18 C 0.094 3.906 19 O -0.393 6.393 20 C 0.038 3.962 21 C 0.509 3.491 22 N -0.831 5.831 23 O -0.590 6.590 24 C -0.115 4.115 25 C 0.062 3.938 26 C -0.058 4.058 27 C -0.191 4.191 28 H 0.284 0.716 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.422 0.578 41 H 0.410 0.590 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.152 0.848 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.474 -20.516 -8.275 35.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.096 0.904 9 O -0.153 6.153 10 C 0.071 3.929 11 C -0.259 4.259 12 C -0.075 4.075 13 C -0.150 4.150 14 C -0.011 4.011 15 N -0.278 5.278 16 C -0.067 4.067 17 C -0.171 4.171 18 C 0.037 3.963 19 O -0.312 6.312 20 C -0.041 4.041 21 C 0.294 3.706 22 N -0.397 5.397 23 O -0.469 6.469 24 C -0.153 4.153 25 C -0.066 4.066 26 C -0.077 4.077 27 C -0.210 4.210 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.254 0.746 41 H 0.242 0.758 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.170 0.830 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 26.029 -20.065 -8.692 33.995 hybrid contribution 0.225 0.804 0.078 0.838 sum 26.254 -19.262 -8.613 33.682 Atomic orbital electron populations 1.69741 1.06945 1.29575 1.50212 1.25319 0.95923 1.02265 0.95573 0.85187 0.78807 0.77274 0.79237 1.19168 1.19176 1.18549 1.20687 0.78173 0.96041 1.52580 0.90378 1.83506 1.21143 1.27544 1.83108 1.19700 0.93332 0.84953 0.94953 1.21268 1.00053 0.93382 1.11185 1.20882 0.94849 0.95845 0.95951 1.19647 0.92950 0.95536 1.06903 1.20857 0.99199 0.92570 0.88442 1.61986 1.52047 1.06044 1.07723 1.22084 0.95316 0.92910 0.96343 1.22060 1.02437 0.98343 0.94263 1.22275 0.99792 0.94066 0.80189 1.88060 1.36543 1.79453 1.27130 1.22488 0.89550 1.00930 0.91175 1.20868 0.83477 0.76648 0.89577 1.43562 1.17411 1.62421 1.16307 1.90786 1.29122 1.55287 1.71716 1.21628 1.00239 0.97347 0.96055 1.22041 0.99071 0.93837 0.91614 1.20944 1.00153 0.90023 0.96536 1.20498 0.90396 0.99840 1.10264 0.90602 0.87867 0.85337 0.89494 0.92181 0.92910 0.89374 0.88959 0.92622 0.89470 0.87232 0.87061 0.74624 0.75839 0.93134 0.91057 0.91468 0.93023 0.82995 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.32 13.96 21.61 0.30 -56.02 16 2 C 0.01 0.43 5.49 84.83 0.47 0.90 16 3 Si 0.97 46.19 28.62 68.60 1.96 48.15 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.40 -24.00 9.95 67.92 0.68 -23.33 16 8 H 0.08 4.96 5.44 -2.91 -0.02 4.95 16 9 O -0.25 -13.54 8.59 -22.74 -0.20 -13.73 16 10 C 0.12 5.64 6.65 22.58 0.15 5.79 16 11 C -0.24 -10.78 9.17 22.39 0.21 -10.58 16 12 C -0.06 -2.00 9.69 22.25 0.22 -1.79 16 13 C -0.15 -4.29 4.12 -19.83 -0.08 -4.37 16 14 C 0.12 2.39 5.43 85.56 0.46 2.85 16 15 N -0.55 -11.46 4.80 -900.92 -4.32 -15.79 16 16 C 0.06 0.86 5.42 86.33 0.47 1.33 16 17 C -0.13 -1.98 5.72 30.65 0.18 -1.80 16 18 C 0.09 1.56 2.68 30.67 0.08 1.65 16 19 O -0.39 -8.33 9.53 -129.94 -1.24 -9.56 16 20 C 0.04 0.42 6.23 71.24 0.44 0.86 16 21 C 0.51 8.32 8.18 87.66 0.72 9.04 16 22 N -0.83 -4.62 8.87 -173.53 -1.54 -6.16 16 23 O -0.59 -17.68 17.34 15.99 0.28 -17.40 16 24 C -0.11 -2.56 5.75 30.65 0.18 -2.39 16 25 C 0.06 1.35 4.58 86.33 0.40 1.74 16 26 C -0.06 -1.67 7.80 22.25 0.17 -1.50 16 27 C -0.19 -7.12 9.99 22.39 0.22 -6.89 16 28 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.10 5.19 5.64 -2.91 -0.02 5.17 16 30 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16 32 H 0.06 0.98 8.02 -2.39 -0.02 0.96 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.09 0.86 7.96 -2.39 -0.02 0.84 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 0.94 7.79 -2.38 -0.02 0.92 16 38 H 0.11 0.53 8.09 -2.39 -0.02 0.51 16 39 H 0.11 0.48 7.96 -2.39 -0.02 0.46 16 40 H 0.42 -1.16 8.83 -92.71 -0.82 -1.98 16 41 H 0.41 2.05 8.93 -92.70 -0.83 1.22 16 42 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 1.86 5.65 -2.39 -0.01 1.85 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 47 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -82.98 383.57 -0.45 -83.43 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -0.64 Total: 15.57 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.95 Total: -28.49 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -5.56 Total: -77.96 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.16 Total: -40.70 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.96 Total: 48.15 kcal Total: -82.98 -0.45 -83.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647102700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.578 kcal (2) G-P(sol) polarization free energy of solvation -82.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.41 seconds