Wall clock time and date at job start Tue Mar 31 2020 20:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00274 * 2 1 4 4 H 1.48492 * 109.47308 * 272.73755 * 3 2 1 5 5 H 1.48503 * 109.46718 * 32.73233 * 3 2 1 6 6 H 1.48491 * 109.47176 * 152.72984 * 3 2 1 7 7 C 1.38811 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99954 * 341.53563 * 7 2 1 9 9 N 1.36944 * 120.00043 * 161.53037 * 7 2 1 10 10 C 1.46919 * 120.63016 * 329.48157 * 9 7 2 11 11 C 1.53189 * 108.77747 * 233.62671 * 10 9 7 12 12 C 1.53047 * 109.31407 * 305.37136 * 11 10 9 13 13 C 1.53043 * 109.53880 * 61.35992 * 12 11 10 14 14 C 1.52999 * 109.49466 * 178.65506 * 13 12 11 15 15 O 1.42905 * 109.46859 * 181.81762 * 14 13 12 16 16 N 1.46500 * 109.49582 * 58.58765 * 13 12 11 17 17 C 1.34772 * 119.99782 * 62.63899 * 16 13 12 18 18 O 1.21696 * 120.00178 * 354.64672 * 17 16 13 19 19 C 1.46666 * 119.99685 * 174.63888 * 17 16 13 20 20 O 1.34931 * 126.00733 * 359.96333 * 19 17 16 21 21 C 1.33941 * 109.37882 * 180.02562 * 20 19 17 22 22 C 1.35141 * 108.75371 * 0.02562 * 21 20 19 23 23 C 1.36469 * 126.00019 * 179.97438 * 19 17 16 24 24 C 1.51076 * 143.68067 * 0.02860 * 23 19 17 25 25 C 1.54372 * 105.24672 * 162.79169 * 24 23 19 26 26 C 1.51151 * 143.44305 * 180.02562 * 22 21 20 27 27 C 1.46998 * 120.60953 * 149.50194 * 9 7 2 28 28 H 0.97001 * 119.99772 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58578 * 113.84130 * 10 9 7 30 30 H 1.08994 * 109.70715 * 353.48693 * 10 9 7 31 31 H 1.08998 * 109.50211 * 185.41691 * 11 10 9 32 32 H 1.09006 * 109.52186 * 65.33479 * 11 10 9 33 33 H 1.09001 * 109.45457 * 301.33881 * 12 11 10 34 34 H 1.08996 * 109.46100 * 181.38489 * 12 11 10 35 35 H 1.09001 * 109.47233 * 301.81498 * 14 13 12 36 36 H 1.08994 * 109.47107 * 61.82130 * 14 13 12 37 37 H 0.96692 * 113.99870 * 179.97438 * 15 14 13 38 38 H 0.96995 * 119.99780 * 242.63895 * 16 13 12 39 39 H 1.08005 * 125.62501 * 179.97438 * 21 20 19 40 40 H 1.09007 * 110.28592 * 281.73617 * 24 23 19 41 41 H 1.09003 * 110.28988 * 43.84217 * 24 23 19 42 42 H 1.09001 * 110.75982 * 144.75793 * 25 24 23 43 43 H 1.08998 * 110.75990 * 268.13936 * 25 24 23 44 44 H 1.08995 * 110.28977 * 316.11733 * 26 22 21 45 45 H 1.09005 * 110.28384 * 78.13410 * 26 22 21 46 46 H 1.08993 * 109.63072 * 6.60143 * 27 9 7 47 47 H 1.08994 * 109.57627 * 246.14951 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4399 2.0799 -1.3984 5 1 1.4778 2.6353 0.7571 6 1 3.5754 1.4242 0.6415 7 6 2.0103 -1.2021 -0.0005 8 1 1.5120 -2.1135 0.2953 9 7 3.3268 -1.2325 -0.3763 10 6 3.8460 -0.2754 -1.3626 11 6 4.5385 -1.0525 -2.4866 12 6 5.6019 -1.9737 -1.8844 13 6 4.9347 -2.9785 -0.9424 14 6 5.9942 -3.9203 -0.3669 15 8 5.3651 -4.8847 0.4795 16 7 3.9392 -3.7569 -1.6835 17 6 4.3252 -4.5447 -2.7066 18 8 5.4841 -4.5357 -3.0778 19 6 3.3486 -5.4130 -3.3724 20 8 2.0399 -5.5194 -3.0614 21 6 1.4595 -6.4072 -3.8794 22 6 2.3919 -6.8869 -4.7319 23 6 3.6039 -6.2554 -4.4153 24 6 4.6898 -6.7536 -5.3399 25 6 4.1334 -8.0554 -5.9553 26 6 2.6067 -7.8392 -5.8859 27 6 4.2468 -2.2238 0.1996 28 1 -0.4850 0.8401 0.0004 29 1 4.5634 0.3906 -0.8831 30 1 3.0240 0.3094 -1.7754 31 1 5.0114 -0.3523 -3.1752 32 1 3.8018 -1.6498 -3.0240 33 1 6.3248 -1.3780 -1.3270 34 1 6.1131 -2.5097 -2.6841 35 1 6.5071 -4.4315 -1.1816 36 1 6.7160 -3.3445 0.2123 37 1 5.9782 -5.5163 0.8796 38 1 3.0023 -3.7053 -1.4379 39 1 0.4182 -6.6932 -3.8603 40 1 4.8866 -6.0199 -6.1217 41 1 5.6001 -6.9605 -4.7770 42 1 4.4616 -8.1653 -6.9889 43 1 4.4282 -8.9204 -5.3612 44 1 2.0984 -8.7844 -5.6955 45 1 2.2447 -7.3963 -6.8137 46 1 3.6880 -2.9265 0.8175 47 1 4.9969 -1.7167 0.8064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672491457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:59 Heat of formation + Delta-G solvation = -36.916938 kcal Electronic energy + Delta-G solvation = -30634.173425 eV Core-core repulsion = 26591.544764 eV Total energy + Delta-G solvation = -4042.628662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -42.79364 -40.06152 -37.60037 -37.32295 -36.19870 -33.97062 -32.43327 -30.94418 -30.74858 -30.65116 -29.78382 -27.07755 -25.78424 -25.19287 -23.53982 -22.15831 -21.97590 -21.14625 -20.29129 -19.55976 -18.76703 -17.53470 -17.05397 -16.76200 -16.50320 -15.91118 -15.45864 -15.29877 -15.22162 -14.72808 -14.34332 -14.05414 -13.83196 -13.66081 -13.56282 -13.28352 -13.11146 -12.84168 -12.79450 -12.32357 -12.20942 -11.85236 -11.79569 -11.61637 -11.51704 -11.38609 -11.33069 -11.30544 -10.79519 -10.68162 -10.26130 -10.02549 -9.99223 -9.73186 -9.51241 -9.39663 -9.27665 -8.72463 -8.61408 -8.38991 -6.97010 -5.96848 -3.37195 1.21382 2.32090 2.84754 3.32087 3.43358 3.47535 3.50557 3.56006 3.98215 4.39429 4.51828 4.63307 4.79950 4.85476 4.90605 5.01700 5.09622 5.25549 5.30052 5.42079 5.50276 5.51546 5.56493 5.60017 5.62318 5.71230 5.74302 5.82450 5.84778 6.00421 6.03103 6.04607 6.14360 6.18163 6.21872 6.30042 6.37079 6.42353 6.57681 6.64678 6.72501 6.85601 6.91266 7.03214 7.79807 7.95117 7.95990 8.30676 8.45881 8.90865 9.69073 10.06736 11.18745 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.003954 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.947976 B = 7079.172167 C = 7923.531203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.029 3.971 3 Si 0.885 3.115 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.124 3.876 11 C -0.130 4.130 12 C -0.122 4.122 13 C 0.165 3.835 14 C 0.065 3.935 15 O -0.564 6.564 16 N -0.677 5.677 17 C 0.604 3.396 18 O -0.535 6.535 19 C -0.052 4.052 20 O -0.148 6.148 21 C 0.010 3.990 22 C -0.224 4.224 23 C -0.117 4.117 24 C -0.050 4.050 25 C -0.119 4.119 26 C -0.044 4.044 27 C 0.151 3.849 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.372 0.628 38 H 0.415 0.585 39 H 0.208 0.792 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 -14.630 -9.016 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.716 3.284 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.103 0.897 9 N -0.328 5.328 10 C -0.001 4.001 11 C -0.169 4.169 12 C -0.160 4.160 13 C 0.077 3.923 14 C -0.014 4.014 15 O -0.368 6.368 16 N -0.326 5.326 17 C 0.390 3.610 18 O -0.416 6.416 19 C -0.104 4.104 20 O -0.043 6.043 21 C -0.060 4.060 22 C -0.226 4.226 23 C -0.120 4.120 24 C -0.087 4.087 25 C -0.156 4.156 26 C -0.081 4.081 27 C 0.024 3.976 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.217 0.783 38 H 0.251 0.749 39 H 0.225 0.775 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.548 -13.990 -9.143 19.248 hybrid contribution 0.308 0.736 0.195 0.821 sum 9.855 -13.254 -8.949 18.785 Atomic orbital electron populations 1.69814 1.05744 1.26575 1.52819 1.25325 0.95194 0.97633 0.98932 0.86903 0.79978 0.84502 0.77046 1.21634 1.23215 1.19507 1.18880 0.83676 0.94527 1.42088 0.89701 1.44378 1.07224 1.36340 1.44844 1.21376 0.97055 0.92096 0.89588 1.21928 0.97903 0.98449 0.98599 1.21793 0.98122 0.96762 0.99369 1.21010 0.88309 0.89875 0.93113 1.22621 0.94695 0.90793 0.93301 1.86533 1.38219 1.46039 1.65982 1.45757 1.12299 1.43071 1.31520 1.16524 0.85766 0.79008 0.79690 1.90741 1.17126 1.68225 1.65464 1.21355 0.82706 1.04969 1.01341 1.84274 1.20395 1.50148 1.49504 1.23360 0.98534 0.92541 0.91553 1.21276 0.94157 1.04733 1.02422 1.21115 0.97922 0.96898 0.96099 1.20491 0.95860 0.96219 0.96153 1.22379 0.94469 0.97568 1.01203 1.20399 0.96468 0.96861 0.94405 1.21144 0.93262 0.91505 0.91699 0.92754 0.95675 0.91032 0.92654 0.91876 0.91708 0.90369 0.91731 0.93210 0.78275 0.74860 0.77537 0.90012 0.90216 0.90380 0.90951 0.90949 0.90471 0.90377 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.43 13.97 55.49 0.78 -26.66 16 2 C 0.03 0.81 5.25 -17.43 -0.09 0.72 16 3 Si 0.89 22.30 24.36 -169.99 -4.14 18.15 16 4 H -0.29 -7.08 6.67 56.52 0.38 -6.70 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.67 6.59 56.52 0.37 -6.30 16 7 C -0.26 -7.16 10.02 -15.06 -0.15 -7.31 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 N -0.60 -13.96 2.60 -172.27 -0.45 -14.41 16 10 C 0.12 2.70 4.19 -3.72 -0.02 2.68 16 11 C -0.13 -2.41 5.93 -26.61 -0.16 -2.57 16 12 C -0.12 -2.07 4.51 -26.68 -0.12 -2.19 16 13 C 0.16 2.85 0.45 -131.70 -0.06 2.79 16 14 C 0.07 0.97 5.66 37.16 0.21 1.18 16 15 O -0.56 -8.22 13.01 -35.23 -0.46 -8.68 16 16 N -0.68 -12.25 4.01 -48.79 -0.20 -12.44 16 17 C 0.60 10.75 7.19 -12.86 -0.09 10.66 16 18 O -0.54 -9.90 13.14 5.19 0.07 -9.83 16 19 C -0.05 -0.86 7.13 -36.82 -0.26 -1.12 16 20 O -0.15 -2.37 10.41 4.92 0.05 -2.32 16 21 C 0.01 0.12 12.08 29.63 0.36 0.48 16 22 C -0.22 -2.79 6.93 -104.74 -0.73 -3.52 16 23 C -0.12 -1.71 6.66 -104.31 -0.69 -2.40 16 24 C -0.05 -0.59 6.76 -26.98 -0.18 -0.77 16 25 C -0.12 -1.02 7.05 -25.30 -0.18 -1.20 16 26 C -0.04 -0.40 6.76 -26.95 -0.18 -0.58 16 27 C 0.15 2.97 5.04 -3.67 -0.02 2.95 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.03 0.54 6.99 -51.93 -0.36 0.18 16 30 H 0.07 1.71 4.76 -51.93 -0.25 1.46 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.26 7.53 -51.93 -0.39 0.87 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.34 6.22 -51.93 -0.32 1.02 16 35 H 0.06 1.00 6.22 -51.93 -0.32 0.68 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.37 3.61 9.12 45.56 0.42 4.02 16 38 H 0.41 8.11 8.19 -40.82 -0.33 7.78 16 39 H 0.21 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -32.82 366.05 -7.42 -40.24 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.23 Total: 10.63 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.36 Total: -0.20 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.13 Total: -53.51 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.34 Total: -20.83 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.82 -7.42 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672491457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.322 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds