Wall clock time and date at job start Tue Mar 31 2020 20:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00274 * 2 1 4 4 H 1.48492 * 109.47308 * 272.73755 * 3 2 1 5 5 H 1.48503 * 109.46718 * 32.73233 * 3 2 1 6 6 H 1.48491 * 109.47176 * 152.72984 * 3 2 1 7 7 C 1.38811 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99954 * 341.53563 * 7 2 1 9 9 N 1.36944 * 120.00043 * 161.53037 * 7 2 1 10 10 C 1.46919 * 120.63016 * 329.48157 * 9 7 2 11 11 C 1.53189 * 108.77747 * 233.62671 * 10 9 7 12 12 C 1.53047 * 109.31407 * 305.37136 * 11 10 9 13 13 C 1.53043 * 109.53880 * 61.35992 * 12 11 10 14 14 C 1.52999 * 109.49466 * 178.65506 * 13 12 11 15 15 O 1.42905 * 109.46859 * 181.81762 * 14 13 12 16 16 N 1.46500 * 109.49582 * 58.58765 * 13 12 11 17 17 C 1.34772 * 119.99782 * 62.63899 * 16 13 12 18 18 O 1.21696 * 120.00178 * 354.64672 * 17 16 13 19 19 C 1.46666 * 119.99685 * 174.63888 * 17 16 13 20 20 O 1.34931 * 126.00733 * 359.96333 * 19 17 16 21 21 C 1.33941 * 109.37882 * 180.02562 * 20 19 17 22 22 C 1.35141 * 108.75371 * 0.02562 * 21 20 19 23 23 C 1.36469 * 126.00019 * 179.97438 * 19 17 16 24 24 C 1.51076 * 143.68067 * 0.02860 * 23 19 17 25 25 C 1.54372 * 105.24672 * 162.79169 * 24 23 19 26 26 C 1.51151 * 143.44305 * 180.02562 * 22 21 20 27 27 C 1.46998 * 120.60953 * 149.50194 * 9 7 2 28 28 H 0.97001 * 119.99772 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58578 * 113.84130 * 10 9 7 30 30 H 1.08994 * 109.70715 * 353.48693 * 10 9 7 31 31 H 1.08998 * 109.50211 * 185.41691 * 11 10 9 32 32 H 1.09006 * 109.52186 * 65.33479 * 11 10 9 33 33 H 1.09001 * 109.45457 * 301.33881 * 12 11 10 34 34 H 1.08996 * 109.46100 * 181.38489 * 12 11 10 35 35 H 1.09001 * 109.47233 * 301.81498 * 14 13 12 36 36 H 1.08994 * 109.47107 * 61.82130 * 14 13 12 37 37 H 0.96692 * 113.99870 * 179.97438 * 15 14 13 38 38 H 0.96995 * 119.99780 * 242.63895 * 16 13 12 39 39 H 1.08005 * 125.62501 * 179.97438 * 21 20 19 40 40 H 1.09007 * 110.28592 * 281.73617 * 24 23 19 41 41 H 1.09003 * 110.28988 * 43.84217 * 24 23 19 42 42 H 1.09001 * 110.75982 * 144.75793 * 25 24 23 43 43 H 1.08998 * 110.75990 * 268.13936 * 25 24 23 44 44 H 1.08995 * 110.28977 * 316.11733 * 26 22 21 45 45 H 1.09005 * 110.28384 * 78.13410 * 26 22 21 46 46 H 1.08993 * 109.63072 * 6.60143 * 27 9 7 47 47 H 1.08994 * 109.57627 * 246.14951 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4399 2.0799 -1.3984 5 1 1.4778 2.6353 0.7571 6 1 3.5754 1.4242 0.6415 7 6 2.0103 -1.2021 -0.0005 8 1 1.5120 -2.1135 0.2953 9 7 3.3268 -1.2325 -0.3763 10 6 3.8460 -0.2754 -1.3626 11 6 4.5385 -1.0525 -2.4866 12 6 5.6019 -1.9737 -1.8844 13 6 4.9347 -2.9785 -0.9424 14 6 5.9942 -3.9203 -0.3669 15 8 5.3651 -4.8847 0.4795 16 7 3.9392 -3.7569 -1.6835 17 6 4.3252 -4.5447 -2.7066 18 8 5.4841 -4.5357 -3.0778 19 6 3.3486 -5.4130 -3.3724 20 8 2.0399 -5.5194 -3.0614 21 6 1.4595 -6.4072 -3.8794 22 6 2.3919 -6.8869 -4.7319 23 6 3.6039 -6.2554 -4.4153 24 6 4.6898 -6.7536 -5.3399 25 6 4.1334 -8.0554 -5.9553 26 6 2.6067 -7.8392 -5.8859 27 6 4.2468 -2.2238 0.1996 28 1 -0.4850 0.8401 0.0004 29 1 4.5634 0.3906 -0.8831 30 1 3.0240 0.3094 -1.7754 31 1 5.0114 -0.3523 -3.1752 32 1 3.8018 -1.6498 -3.0240 33 1 6.3248 -1.3780 -1.3270 34 1 6.1131 -2.5097 -2.6841 35 1 6.5071 -4.4315 -1.1816 36 1 6.7160 -3.3445 0.2123 37 1 5.9782 -5.5163 0.8796 38 1 3.0023 -3.7053 -1.4379 39 1 0.4182 -6.6932 -3.8603 40 1 4.8866 -6.0199 -6.1217 41 1 5.6001 -6.9605 -4.7770 42 1 4.4616 -8.1653 -6.9889 43 1 4.4282 -8.9204 -5.3612 44 1 2.0984 -8.7844 -5.6955 45 1 2.2447 -7.3963 -6.8137 46 1 3.6880 -2.9265 0.8175 47 1 4.9969 -1.7167 0.8064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672491457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:43 Heat of formation + Delta-G solvation = -61.238267 kcal Electronic energy + Delta-G solvation = -30635.228077 eV Core-core repulsion = 26591.544764 eV Total energy + Delta-G solvation = -4043.683314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.06 seconds Orbital eigenvalues (eV) -43.86827 -41.45278 -39.06981 -38.24418 -37.49806 -35.56393 -34.14895 -32.76569 -32.11944 -31.60132 -30.94537 -28.03257 -27.44970 -26.80729 -24.65440 -23.80708 -23.11578 -22.60217 -21.39602 -20.77911 -20.12061 -18.79757 -18.64049 -18.22450 -17.60508 -17.27696 -16.96660 -16.85557 -16.19241 -15.87006 -15.70272 -15.59984 -15.20684 -15.13364 -14.94585 -14.72987 -14.43779 -14.04881 -13.99446 -13.76300 -13.65064 -13.36034 -13.31260 -12.97496 -12.65880 -12.60826 -12.53302 -12.23532 -12.07381 -12.05313 -12.02765 -11.70095 -11.49494 -11.44673 -11.23976 -10.81234 -10.57254 -10.26237 -10.03533 -9.52575 -8.91075 -8.16143 -5.52523 0.04515 1.31216 1.32067 1.41565 1.50761 1.75098 2.13711 2.28776 2.42346 3.05492 3.06170 3.21769 3.32134 3.66820 3.82317 3.91803 3.95036 4.12794 4.14897 4.18130 4.19927 4.21279 4.35907 4.51386 4.55967 4.60476 4.71810 4.73618 4.77516 4.79950 4.83230 4.94758 4.95238 4.97736 5.03634 5.06217 5.09926 5.20349 5.21342 5.33218 5.34207 5.45609 5.55091 5.87200 5.88857 6.12968 6.53069 6.88022 6.92349 7.08248 7.59499 8.00687 9.03315 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.003954 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.947976 B = 7079.172167 C = 7923.531203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.029 4.029 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.313 1.313 6 H -0.256 1.256 7 C -0.247 4.247 8 H 0.051 0.949 9 N -0.614 5.614 10 C 0.121 3.879 11 C -0.122 4.122 12 C -0.115 4.115 13 C 0.162 3.838 14 C 0.074 3.926 15 O -0.582 6.582 16 N -0.684 5.684 17 C 0.604 3.396 18 O -0.548 6.548 19 C -0.099 4.099 20 O -0.174 6.174 21 C 0.010 3.990 22 C -0.229 4.229 23 C -0.122 4.122 24 C -0.056 4.056 25 C -0.110 4.110 26 C -0.042 4.042 27 C 0.154 3.846 28 H 0.261 0.739 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.393 0.607 38 H 0.403 0.597 39 H 0.245 0.755 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.721 -15.598 -10.420 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.224 4.224 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.242 1.242 6 H -0.180 1.180 7 C -0.376 4.376 8 H 0.069 0.931 9 N -0.338 5.338 10 C -0.004 4.004 11 C -0.161 4.161 12 C -0.154 4.154 13 C 0.075 3.925 14 C -0.005 4.005 15 O -0.390 6.390 16 N -0.331 5.331 17 C 0.391 3.609 18 O -0.430 6.430 19 C -0.150 4.150 20 O -0.070 6.070 21 C -0.059 4.059 22 C -0.230 4.230 23 C -0.125 4.125 24 C -0.093 4.093 25 C -0.147 4.147 26 C -0.079 4.079 27 C 0.028 3.972 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.242 0.758 38 H 0.237 0.763 39 H 0.261 0.739 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.765 -14.991 -10.552 21.783 hybrid contribution -0.405 0.872 0.601 1.134 sum 11.360 -14.119 -9.951 20.674 Atomic orbital electron populations 1.69949 1.07430 1.27148 1.55605 1.25931 0.95766 1.00925 0.99764 0.85894 0.78943 0.80157 0.77401 1.20494 1.24200 1.18047 1.18770 0.85465 0.93202 1.40183 0.93117 1.44414 1.06343 1.37353 1.45713 1.21423 0.96630 0.92154 0.90146 1.21822 0.97826 0.98646 0.97776 1.21759 0.97737 0.96430 0.99443 1.21068 0.88523 0.90505 0.92401 1.22492 0.93801 0.90656 0.93562 1.86489 1.39674 1.46741 1.66055 1.45808 1.11711 1.43583 1.32001 1.16656 0.85988 0.78837 0.79382 1.90703 1.17563 1.68839 1.65895 1.21317 0.83205 1.07061 1.03398 1.84242 1.20458 1.51482 1.50827 1.24238 1.00114 0.91078 0.90496 1.21809 0.92990 1.05022 1.03205 1.21684 0.99996 0.95657 0.95148 1.20676 0.94987 0.97939 0.95665 1.22411 0.93875 0.95805 1.02592 1.20553 0.96993 0.97014 0.93364 1.21198 0.92785 0.90603 0.92587 0.93023 0.94171 0.93429 0.90114 0.94101 0.89343 0.90280 0.92222 0.90577 0.75789 0.76279 0.73931 0.89757 0.90967 0.87744 0.90256 0.88804 0.89124 0.92138 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.97 13.97 21.65 0.30 -59.66 16 2 C -0.03 -1.67 5.25 84.86 0.45 -1.23 16 3 Si 0.95 46.47 24.36 68.60 1.67 48.14 16 4 H -0.28 -13.04 6.67 99.48 0.66 -12.38 16 5 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 6 H -0.26 -11.86 6.59 99.48 0.66 -11.20 16 7 C -0.25 -13.83 10.02 84.03 0.84 -12.99 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.61 -28.40 2.60 -698.94 -1.82 -30.21 16 10 C 0.12 5.11 4.19 86.36 0.36 5.48 16 11 C -0.12 -4.37 5.93 30.67 0.18 -4.18 16 12 C -0.12 -3.67 4.51 30.62 0.14 -3.54 16 13 C 0.16 5.49 0.45 3.68 0.00 5.49 16 14 C 0.07 2.08 5.66 71.98 0.41 2.48 16 15 O -0.58 -16.42 13.01 -148.98 -1.94 -18.36 16 16 N -0.68 -25.35 4.01 -426.49 -1.71 -27.06 16 17 C 0.60 21.99 7.19 86.44 0.62 22.62 16 18 O -0.55 -20.33 13.14 -4.33 -0.06 -20.38 16 19 C -0.10 -3.39 7.13 24.06 0.17 -3.22 16 20 O -0.17 -5.76 10.41 -5.31 -0.06 -5.82 16 21 C 0.01 0.23 12.08 67.11 0.81 1.04 16 22 C -0.23 -5.36 6.93 -19.94 -0.14 -5.50 16 23 C -0.12 -3.51 6.66 -19.66 -0.13 -3.64 16 24 C -0.06 -1.23 6.76 30.43 0.21 -1.02 16 25 C -0.11 -1.56 7.05 31.52 0.22 -1.34 16 26 C -0.04 -0.64 6.76 30.45 0.21 -0.43 16 27 C 0.15 5.97 5.04 86.35 0.43 6.41 16 28 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.04 1.60 6.99 -2.38 -0.02 1.58 16 30 H 0.05 2.24 4.76 -2.39 -0.01 2.23 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.04 1.64 7.53 -2.38 -0.02 1.62 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 34 H 0.08 2.57 6.22 -2.39 -0.01 2.55 16 35 H 0.06 1.77 6.22 -2.39 -0.01 1.75 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.39 7.03 9.12 -74.06 -0.68 6.36 16 38 H 0.40 16.70 8.19 -92.71 -0.76 15.94 16 39 H 0.24 3.64 8.06 -2.91 -0.02 3.61 16 40 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.06 2.55 7.70 -2.39 -0.02 2.53 16 47 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -73.88 366.05 0.67 -73.21 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.51 Total: 33.70 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.78 Total: 6.44 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -3.22 Total: -116.94 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -2.05 Total: -44.56 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.67 Total: 48.14 kcal Total: -73.88 0.67 -73.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672491457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.971 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.06 seconds