Wall clock time and date at job start Tue Mar 31 2020 20:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00111 * 2 1 4 4 H 1.48503 * 109.47457 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47457 * 300.00198 * 3 2 1 6 6 H 1.48510 * 109.47377 * 60.00024 * 3 2 1 7 7 C 1.38813 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00437 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47148 * 175.67575 * 10 9 7 12 12 H 1.08996 * 109.58451 * 48.06639 * 11 10 9 13 13 C 1.53193 * 109.70376 * 168.41973 * 11 10 9 14 14 C 1.53038 * 109.31374 * 174.49311 * 13 11 10 15 15 C 1.53040 * 109.53960 * 298.63654 * 14 13 11 16 16 C 1.52758 * 109.38395 * 61.23759 * 15 14 13 17 17 N 1.46924 * 109.58975 * 287.77939 * 11 10 9 18 18 C 1.34783 * 120.62984 * 6.44292 * 17 11 10 19 19 O 1.21692 * 119.99628 * 3.53188 * 18 17 11 20 20 C 1.46654 * 120.00018 * 183.53184 * 18 17 11 21 21 O 1.35400 * 126.11866 * 352.91672 * 20 18 17 22 22 C 1.34397 * 109.47774 * 180.02562 * 21 20 18 23 23 C 1.33903 * 108.55830 * 359.96485 * 22 21 20 24 24 C 1.35188 * 126.12175 * 172.95861 * 20 18 17 25 25 C 1.50721 * 130.57466 * 0.08739 * 24 20 18 26 26 C 1.53674 * 107.44468 * 164.22736 * 25 24 20 27 27 O 1.42900 * 109.98066 * 48.25272 * 26 25 24 28 28 C 1.43518 * 114.77618 * 287.65129 * 27 26 25 29 29 H 0.96997 * 119.99785 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99517 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46769 * 55.67924 * 10 9 7 32 32 H 1.08989 * 109.47450 * 295.68042 * 10 9 7 33 33 H 1.09003 * 109.49911 * 294.44802 * 13 11 10 34 34 H 1.09004 * 109.49333 * 54.51030 * 13 11 10 35 35 H 1.08999 * 109.46121 * 58.65630 * 14 13 11 36 36 H 1.09003 * 109.45896 * 178.63183 * 14 13 11 37 37 H 1.09004 * 109.50075 * 181.31709 * 15 14 13 38 38 H 1.09007 * 109.49815 * 301.38236 * 15 14 13 39 39 H 1.09004 * 109.51180 * 185.70614 * 16 15 14 40 40 H 1.09002 * 109.42955 * 65.42913 * 16 15 14 41 41 H 1.07997 * 125.72341 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.86598 * 44.73922 * 25 24 20 43 43 H 1.09006 * 109.85977 * 283.71319 * 25 24 20 44 44 H 1.08993 * 109.38628 * 168.40639 * 26 25 24 45 45 H 1.09000 * 109.38390 * 288.09907 * 26 25 24 46 46 H 1.09000 * 109.81929 * 291.97435 * 28 27 26 47 47 H 1.09000 * 109.83112 * 171.04577 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0673 -4.8176 0.1093 12 1 0.2599 -4.6773 -0.6092 13 6 1.7867 -6.1393 -0.1782 14 6 0.8238 -7.3033 0.0667 15 6 0.3821 -7.3026 1.5319 16 6 -0.3486 -5.9971 1.8406 17 7 0.5135 -4.8668 1.4693 18 6 0.7955 -3.8963 2.3611 19 8 1.4619 -2.9355 2.0242 20 6 0.2992 -3.9984 3.7373 21 8 -0.5576 -4.9346 4.2094 22 6 -0.7874 -4.7140 5.5151 23 6 -0.0844 -3.6399 5.8960 24 6 0.6146 -3.1742 4.7614 25 6 1.5165 -1.9675 4.8066 26 6 1.1940 -1.1994 6.0979 27 8 1.1625 -2.1000 7.2069 28 6 0.0220 -2.9705 7.2425 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.7415 -3.6817 0.8493 32 1 2.6253 -3.7489 -0.9255 33 1 2.1192 -6.1543 -1.2162 34 1 2.6492 -6.2349 0.4815 35 1 -0.0497 -7.1934 -0.5760 36 1 1.3259 -8.2438 -0.1605 37 1 -0.2853 -8.1456 1.7112 38 1 1.2574 -7.3882 2.1759 39 1 -0.5750 -5.9496 2.9058 40 1 -1.2740 -5.9550 1.2661 41 1 -1.4309 -5.3041 6.1506 42 1 1.3288 -1.3322 3.9410 43 1 2.5594 -2.2848 4.8150 44 1 1.9587 -0.4418 6.2688 45 1 0.2227 -0.7148 5.9976 46 1 -0.8798 -2.3904 7.4387 47 1 0.1550 -3.7226 8.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673114406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:17 Heat of formation + Delta-G solvation = 0.390171 kcal Electronic energy + Delta-G solvation = -31020.651173 eV Core-core repulsion = 26979.640269 eV Total energy + Delta-G solvation = -4041.010904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.68608 -39.86686 -38.45411 -36.95557 -34.50403 -33.53964 -32.51395 -32.10020 -31.66568 -29.80245 -28.94716 -26.24073 -26.12444 -24.46020 -23.65134 -22.74730 -22.53389 -21.08027 -20.31583 -19.50790 -19.00179 -17.29843 -16.69706 -16.34572 -16.18588 -16.03532 -15.47198 -15.25474 -14.89615 -14.72715 -14.43940 -14.04419 -13.99711 -13.59254 -13.47391 -13.28225 -12.99383 -12.88070 -12.65332 -12.50567 -12.26707 -12.21081 -11.97385 -11.67508 -11.35876 -10.97836 -10.88987 -10.75149 -10.72306 -10.71623 -10.36821 -10.27840 -9.85460 -9.74933 -9.52169 -9.28388 -8.75223 -8.64195 -8.32824 -8.05606 -6.51028 -5.54717 -2.74094 1.41540 2.41315 2.83369 3.44282 3.53719 3.59676 3.61698 3.79583 3.82537 4.57614 4.66253 4.75343 4.84856 4.95018 4.98052 5.02262 5.13056 5.20733 5.30491 5.31557 5.34898 5.46159 5.49257 5.63113 5.65008 5.78286 5.79935 5.87341 5.93334 5.96843 5.99469 6.02840 6.10912 6.12306 6.15402 6.28788 6.35894 6.39927 6.51873 6.60416 6.70515 6.90087 7.05110 7.17528 7.24046 7.88725 7.90041 8.62370 8.82169 9.74218 10.32351 10.67335 11.69200 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.006407 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.662700 B = 4369.071185 C = 7397.095961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.023 4.023 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.198 4.198 8 H 0.065 0.935 9 N -0.693 5.693 10 C 0.158 3.842 11 C 0.144 3.856 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.132 4.132 16 C 0.094 3.906 17 N -0.607 5.607 18 C 0.551 3.449 19 O -0.410 6.410 20 C -0.042 4.042 21 O -0.167 6.167 22 C -0.018 4.018 23 C -0.232 4.232 24 C -0.097 4.097 25 C -0.086 4.086 26 C 0.063 3.937 27 O -0.383 6.383 28 C 0.136 3.864 29 H 0.249 0.751 30 H 0.379 0.621 31 H 0.042 0.958 32 H 0.015 0.985 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.203 0.797 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -15.668 10.790 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.217 4.217 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.330 4.330 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.031 3.969 11 C 0.041 3.959 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.170 4.170 16 C -0.028 4.028 17 N -0.344 5.344 18 C 0.335 3.665 19 O -0.278 6.278 20 C -0.093 4.093 21 O -0.065 6.065 22 C -0.086 4.086 23 C -0.234 4.234 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.013 4.013 27 O -0.302 6.302 28 C 0.060 3.940 29 H 0.059 0.941 30 H 0.213 0.787 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.219 0.781 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.746 -15.180 10.543 18.565 hybrid contribution -0.362 0.816 0.024 0.893 sum -2.108 -14.364 10.567 17.957 Atomic orbital electron populations 1.69666 1.04938 1.24738 1.59604 1.24588 0.95380 0.97113 1.04607 0.86199 0.78758 0.84936 0.76933 1.20834 1.22385 1.22303 1.19149 0.90679 0.84074 1.39100 0.91680 1.42258 1.05320 0.99729 1.86290 1.20900 0.93419 0.84894 0.97698 1.21508 0.96663 0.95628 0.82137 0.91167 1.21917 0.98532 0.94126 1.02049 1.21510 0.99488 0.98248 0.96320 1.21826 1.00742 0.97301 0.97162 1.22049 0.92835 0.85395 1.02535 1.47709 1.50703 1.23631 1.12326 1.16940 0.84259 0.83757 0.81514 1.91409 1.34666 1.28693 1.73030 1.22163 0.98486 0.92709 0.95900 1.84428 1.52763 1.46123 1.23175 1.23572 1.02296 0.99032 0.83724 1.20954 1.03750 1.00159 0.98536 1.20101 1.00186 0.98419 0.91235 1.20867 0.98193 0.93847 0.99440 1.22712 1.01902 0.91214 0.85478 1.87939 1.44544 1.51083 1.46590 1.20979 0.89257 0.91896 0.91893 0.94143 0.78720 0.94006 0.96735 0.90745 0.91570 0.91850 0.92025 0.91222 0.91789 0.87580 0.91982 0.78064 0.87313 0.89734 0.88236 0.92838 0.91881 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.41 13.06 55.49 0.72 -28.68 16 2 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 3 Si 0.90 23.44 29.55 -169.99 -5.02 18.41 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 7 C -0.20 -5.73 9.19 -15.06 -0.14 -5.87 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.69 -18.15 3.26 -59.91 -0.20 -18.34 16 10 C 0.16 3.36 4.90 -4.05 -0.02 3.34 16 11 C 0.14 2.43 2.91 -67.60 -0.20 2.24 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 13 C -0.13 -1.66 5.35 -26.61 -0.14 -1.80 16 14 C -0.12 -1.26 5.89 -26.69 -0.16 -1.42 16 15 C -0.13 -1.41 6.06 -26.83 -0.16 -1.57 16 16 C 0.09 1.24 6.28 -3.93 -0.02 1.22 16 17 N -0.61 -10.25 2.98 -167.02 -0.50 -10.74 16 18 C 0.55 10.94 7.39 -12.86 -0.10 10.85 16 19 O -0.41 -9.70 8.97 5.20 0.05 -9.66 16 20 C -0.04 -0.74 6.83 -37.27 -0.25 -0.99 16 21 O -0.17 -2.40 7.12 2.33 0.02 -2.39 16 22 C -0.02 -0.22 12.06 29.21 0.35 0.14 16 23 C -0.23 -3.22 6.04 -105.01 -0.63 -3.85 16 24 C -0.10 -1.67 6.02 -104.59 -0.63 -2.30 16 25 C -0.09 -1.50 5.78 -27.52 -0.16 -1.66 16 26 C 0.06 0.92 6.75 37.51 0.25 1.17 16 27 O -0.38 -5.49 10.70 -35.23 -0.38 -5.86 16 28 C 0.14 1.59 7.27 36.03 0.26 1.85 16 29 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.38 10.69 7.59 -40.82 -0.31 10.38 16 31 H 0.04 0.96 6.37 -51.93 -0.33 0.63 16 32 H 0.02 0.31 8.10 -51.94 -0.42 -0.11 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.11 1.40 3.77 -55.30 -0.21 1.19 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.20 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.11 2.23 7.52 -51.93 -0.39 1.84 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -34.38 364.52 -8.78 -43.16 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.12 Total: 8.04 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.84 Total: 0.58 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.03 Total: -57.77 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.31 Total: -17.90 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.38 -8.78 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673114406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.547 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds