Wall clock time and date at job start Tue Mar 31 2020 20:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00111 * 2 1 4 4 H 1.48503 * 109.47457 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47457 * 300.00198 * 3 2 1 6 6 H 1.48510 * 109.47377 * 60.00024 * 3 2 1 7 7 C 1.38813 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00437 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47148 * 175.67575 * 10 9 7 12 12 H 1.08996 * 109.58451 * 48.06639 * 11 10 9 13 13 C 1.53193 * 109.70376 * 168.41973 * 11 10 9 14 14 C 1.53038 * 109.31374 * 174.49311 * 13 11 10 15 15 C 1.53040 * 109.53960 * 298.63654 * 14 13 11 16 16 C 1.52758 * 109.38395 * 61.23759 * 15 14 13 17 17 N 1.46924 * 109.58975 * 287.77939 * 11 10 9 18 18 C 1.34783 * 120.62984 * 6.44292 * 17 11 10 19 19 O 1.21692 * 119.99628 * 3.53188 * 18 17 11 20 20 C 1.46654 * 120.00018 * 183.53184 * 18 17 11 21 21 O 1.35400 * 126.11866 * 352.91672 * 20 18 17 22 22 C 1.34397 * 109.47774 * 180.02562 * 21 20 18 23 23 C 1.33903 * 108.55830 * 359.96485 * 22 21 20 24 24 C 1.35188 * 126.12175 * 172.95861 * 20 18 17 25 25 C 1.50721 * 130.57466 * 0.08739 * 24 20 18 26 26 C 1.53674 * 107.44468 * 164.22736 * 25 24 20 27 27 O 1.42900 * 109.98066 * 48.25272 * 26 25 24 28 28 C 1.43518 * 114.77618 * 287.65129 * 27 26 25 29 29 H 0.96997 * 119.99785 * 0.02562 * 1 2 3 30 30 H 0.97007 * 119.99517 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46769 * 55.67924 * 10 9 7 32 32 H 1.08989 * 109.47450 * 295.68042 * 10 9 7 33 33 H 1.09003 * 109.49911 * 294.44802 * 13 11 10 34 34 H 1.09004 * 109.49333 * 54.51030 * 13 11 10 35 35 H 1.08999 * 109.46121 * 58.65630 * 14 13 11 36 36 H 1.09003 * 109.45896 * 178.63183 * 14 13 11 37 37 H 1.09004 * 109.50075 * 181.31709 * 15 14 13 38 38 H 1.09007 * 109.49815 * 301.38236 * 15 14 13 39 39 H 1.09004 * 109.51180 * 185.70614 * 16 15 14 40 40 H 1.09002 * 109.42955 * 65.42913 * 16 15 14 41 41 H 1.07997 * 125.72341 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.86598 * 44.73922 * 25 24 20 43 43 H 1.09006 * 109.85977 * 283.71319 * 25 24 20 44 44 H 1.08993 * 109.38628 * 168.40639 * 26 25 24 45 45 H 1.09000 * 109.38390 * 288.09907 * 26 25 24 46 46 H 1.09000 * 109.81929 * 291.97435 * 28 27 26 47 47 H 1.09000 * 109.83112 * 171.04577 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0673 -4.8176 0.1093 12 1 0.2599 -4.6773 -0.6092 13 6 1.7867 -6.1393 -0.1782 14 6 0.8238 -7.3033 0.0667 15 6 0.3821 -7.3026 1.5319 16 6 -0.3486 -5.9971 1.8406 17 7 0.5135 -4.8668 1.4693 18 6 0.7955 -3.8963 2.3611 19 8 1.4619 -2.9355 2.0242 20 6 0.2992 -3.9984 3.7373 21 8 -0.5576 -4.9346 4.2094 22 6 -0.7874 -4.7140 5.5151 23 6 -0.0844 -3.6399 5.8960 24 6 0.6146 -3.1742 4.7614 25 6 1.5165 -1.9675 4.8066 26 6 1.1940 -1.1994 6.0979 27 8 1.1625 -2.1000 7.2069 28 6 0.0220 -2.9705 7.2425 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.7415 -3.6817 0.8493 32 1 2.6253 -3.7489 -0.9255 33 1 2.1192 -6.1543 -1.2162 34 1 2.6492 -6.2349 0.4815 35 1 -0.0497 -7.1934 -0.5760 36 1 1.3259 -8.2438 -0.1605 37 1 -0.2853 -8.1456 1.7112 38 1 1.2574 -7.3882 2.1759 39 1 -0.5750 -5.9496 2.9058 40 1 -1.2740 -5.9550 1.2661 41 1 -1.4309 -5.3041 6.1506 42 1 1.3288 -1.3322 3.9410 43 1 2.5594 -2.2848 4.8150 44 1 1.9587 -0.4418 6.2688 45 1 0.2227 -0.7148 5.9976 46 1 -0.8798 -2.3904 7.4387 47 1 0.1550 -3.7226 8.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673114406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:01 Heat of formation + Delta-G solvation = -23.124843 kcal Electronic energy + Delta-G solvation = -31021.670860 eV Core-core repulsion = 26979.640269 eV Total energy + Delta-G solvation = -4042.030592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 23.26 seconds Orbital eigenvalues (eV) -43.85404 -41.25343 -39.56536 -38.26495 -36.38652 -34.70989 -33.92960 -33.62529 -32.89768 -31.54041 -30.19450 -27.70376 -27.23037 -26.01341 -24.85644 -24.36511 -23.86535 -22.51045 -21.39579 -20.70118 -20.31914 -19.08719 -18.19743 -17.53768 -17.40809 -17.15861 -16.79862 -16.67137 -16.33062 -16.01096 -15.81825 -15.43041 -15.26423 -15.14835 -14.86350 -14.67659 -14.46278 -14.23288 -13.91258 -13.80578 -13.63781 -13.58174 -13.27725 -13.09336 -12.83244 -12.68758 -12.50768 -12.12641 -12.05468 -11.93397 -11.84977 -11.74297 -11.42881 -11.31713 -10.91653 -10.85388 -10.43654 -10.22080 -9.66362 -9.39039 -8.62813 -7.82797 -5.01504 0.17186 1.29722 1.42635 1.44247 1.53703 1.63097 2.19746 2.34574 2.61587 2.78211 3.46398 3.50127 3.52983 3.76963 3.81396 3.91314 3.95075 4.01091 4.11066 4.13402 4.30052 4.31489 4.37145 4.41809 4.48992 4.51570 4.57908 4.67221 4.72543 4.84122 4.84406 4.86379 4.94856 5.00474 5.03157 5.08523 5.10845 5.19786 5.25537 5.29654 5.37779 5.48336 5.54066 5.81412 5.89550 6.10331 6.37458 6.52897 7.35644 7.45008 8.21013 8.45096 9.42298 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.006407 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.662700 B = 4369.071185 C = 7397.095961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.085 4.085 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.194 4.194 8 H 0.060 0.940 9 N -0.701 5.701 10 C 0.162 3.838 11 C 0.147 3.853 12 H 0.064 0.936 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.087 3.913 17 N -0.604 5.604 18 C 0.547 3.453 19 O -0.469 6.469 20 C -0.074 4.074 21 O -0.162 6.162 22 C 0.017 3.983 23 C -0.252 4.252 24 C -0.115 4.115 25 C -0.085 4.085 26 C 0.073 3.927 27 O -0.393 6.393 28 C 0.133 3.867 29 H 0.243 0.757 30 H 0.365 0.635 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.263 0.737 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -18.696 12.687 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.275 4.275 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.226 1.226 7 C -0.326 4.326 8 H 0.078 0.922 9 N -0.341 5.341 10 C 0.036 3.964 11 C 0.044 3.956 12 H 0.082 0.918 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.162 4.162 16 C -0.034 4.034 17 N -0.340 5.340 18 C 0.333 3.667 19 O -0.341 6.341 20 C -0.125 4.125 21 O -0.060 6.060 22 C -0.050 4.050 23 C -0.253 4.253 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.004 4.004 27 O -0.312 6.312 28 C 0.057 3.943 29 H 0.052 0.948 30 H 0.197 0.803 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.278 0.722 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.130 0.870 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.730 -18.293 12.435 22.287 hybrid contribution -0.092 1.582 -0.427 1.642 sum -2.821 -16.710 12.008 20.770 Atomic orbital electron populations 1.69826 1.06310 1.24864 1.61899 1.25288 0.96237 1.00188 1.05797 0.85207 0.78082 0.80976 0.76485 1.19688 1.22152 1.22642 1.19394 0.90556 0.85501 1.37198 0.92222 1.42291 1.04583 1.00680 1.86560 1.20919 0.94055 0.84806 0.96646 1.21439 0.95735 0.96098 0.82336 0.91845 1.21877 0.98568 0.92676 1.02678 1.21514 0.99194 0.97932 0.96410 1.21805 1.00861 0.96549 0.97010 1.22345 0.92815 0.85271 1.02926 1.47886 1.50442 1.23949 1.11719 1.17374 0.83199 0.83494 0.82654 1.91371 1.37461 1.30634 1.74674 1.21696 1.00945 0.94668 0.95226 1.84415 1.51884 1.45004 1.24660 1.24689 1.00158 0.97719 0.82476 1.21277 1.04205 1.01292 0.98547 1.20420 1.00311 0.98020 0.93001 1.20722 0.97947 0.94108 0.99427 1.22595 1.02394 0.91106 0.84273 1.87920 1.46129 1.51371 1.45734 1.21361 0.89129 0.92323 0.91482 0.94838 0.80334 0.95918 0.96423 0.89494 0.92084 0.91208 0.89378 0.87950 0.92336 0.87233 0.91271 0.72173 0.91755 0.90846 0.86966 0.92670 0.90094 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.10 13.06 21.65 0.28 -63.82 16 2 C -0.08 -5.27 5.50 84.86 0.47 -4.80 16 3 Si 0.96 50.31 29.55 68.60 2.03 52.34 16 4 H -0.27 -13.55 7.11 99.48 0.71 -12.85 16 5 H -0.29 -15.15 7.11 99.48 0.71 -14.45 16 6 H -0.30 -15.63 7.11 99.48 0.71 -14.93 16 7 C -0.19 -11.81 9.19 84.03 0.77 -11.04 16 8 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 9 N -0.70 -38.92 3.26 -343.47 -1.12 -40.04 16 10 C 0.16 7.26 4.90 86.38 0.42 7.68 16 11 C 0.15 5.08 2.91 44.97 0.13 5.21 16 12 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.12 -2.95 5.35 30.67 0.16 -2.79 16 14 C -0.11 -2.04 5.89 30.62 0.18 -1.86 16 15 C -0.12 -2.25 6.06 30.53 0.19 -2.07 16 16 C 0.09 2.16 6.28 86.22 0.54 2.70 16 17 N -0.60 -20.76 2.98 -800.55 -2.38 -23.14 16 18 C 0.55 22.89 7.39 86.44 0.64 23.52 16 19 O -0.47 -24.00 8.97 -4.32 -0.04 -24.04 16 20 C -0.07 -2.69 6.83 23.77 0.16 -2.53 16 21 O -0.16 -4.33 7.12 -14.59 -0.10 -4.43 16 22 C 0.02 0.33 12.06 66.83 0.81 1.14 16 23 C -0.25 -6.39 6.04 -20.12 -0.12 -6.51 16 24 C -0.11 -4.04 6.02 -19.84 -0.12 -4.16 16 25 C -0.08 -3.15 5.78 30.08 0.17 -2.98 16 26 C 0.07 2.15 6.75 72.21 0.49 2.64 16 27 O -0.39 -10.66 10.70 -148.98 -1.59 -12.26 16 28 C 0.13 2.67 7.27 71.25 0.52 3.19 16 29 H 0.24 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.37 21.91 7.59 -92.70 -0.70 21.21 16 31 H 0.02 1.12 6.37 -2.38 -0.02 1.11 16 32 H 0.02 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.11 2.66 3.77 -55.84 -0.21 2.45 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.26 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.06 2.95 7.52 -2.39 -0.02 2.93 16 43 H 0.07 2.78 8.14 -2.38 -0.02 2.77 16 44 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 45 H 0.05 1.58 8.08 -2.39 -0.02 1.57 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -81.82 364.52 2.56 -79.25 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.08 Total: 28.78 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.41 Total: 7.35 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -3.22 Total: -127.00 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.74 Total: -40.73 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.03 Total: 52.34 kcal Total: -81.82 2.56 -79.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673114406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.130 kcal (2) G-P(sol) polarization free energy of solvation -81.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.26 seconds