Wall clock time and date at job start Tue Mar 31 2020 19:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46493 * 109.47177 * 120.00339 * 2 1 3 5 5 C 1.36936 * 120.00076 * 274.99567 * 4 2 1 6 6 H 1.08002 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99914 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00446 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47005 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46943 * 120.00241 * 9 7 5 12 12 H 1.48494 * 109.47173 * 240.00489 * 9 7 5 13 13 C 1.52997 * 109.46921 * 240.00379 * 2 1 3 14 14 H 1.09000 * 109.47140 * 175.00145 * 13 2 1 15 15 C 1.53006 * 109.47164 * 295.00093 * 13 2 1 16 16 N 1.46500 * 109.47204 * 55.00018 * 13 2 1 17 17 C 1.34779 * 119.99741 * 155.00342 * 16 13 2 18 18 O 1.21279 * 120.00369 * 359.97438 * 17 16 13 19 19 C 1.50708 * 119.99762 * 179.97438 * 17 16 13 20 20 C 1.50697 * 109.47045 * 179.97438 * 19 17 16 21 21 C 1.35133 * 125.69435 * 124.72166 * 20 19 17 22 22 N 1.36804 * 107.18719 * 179.84323 * 21 20 19 23 23 C 1.36600 * 132.54909 * 180.11163 * 22 21 20 24 24 C 1.35128 * 120.57948 * 180.33416 * 23 22 21 25 25 F 1.35098 * 119.87929 * 179.97438 * 24 23 22 26 26 C 1.40607 * 120.24718 * 359.97438 * 24 23 22 27 27 C 1.36013 * 119.68765 * 359.97438 * 26 24 23 28 28 C 1.37031 * 107.01438 * 0.41158 * 22 21 20 29 29 N 1.32605 * 108.03328 * 359.74428 * 28 22 21 30 30 H 1.09004 * 109.46964 * 299.99798 * 1 2 3 31 31 H 1.08998 * 109.47141 * 59.99120 * 1 2 3 32 32 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 33 33 H 0.97008 * 120.00184 * 94.99888 * 4 2 1 34 34 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46998 * 299.99705 * 15 13 2 36 36 H 1.09000 * 109.47050 * 59.99996 * 15 13 2 37 37 H 1.09001 * 109.46801 * 180.02562 * 15 13 2 38 38 H 0.96997 * 120.00110 * 334.99611 * 16 13 2 39 39 H 1.08994 * 109.47136 * 300.00021 * 19 17 16 40 40 H 1.09002 * 109.46457 * 59.99935 * 19 17 16 41 41 H 1.08004 * 126.40085 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.70838 * 0.35249 * 23 22 21 43 43 H 1.08004 * 120.15949 * 180.02562 * 26 24 23 44 44 H 1.08001 * 120.31494 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4244 7 6 2.6114 -0.6622 3.5091 8 7 2.9244 -1.9392 3.4500 9 14 2.7893 0.2695 5.1185 10 1 2.3745 1.6817 4.9213 11 1 1.9282 -0.3592 6.1521 12 1 4.2060 0.2265 5.5614 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1881 16 7 1.4558 -0.1035 -2.4424 17 6 2.0912 -0.1936 -3.6276 18 8 3.1467 -0.7857 -3.7063 19 6 1.4900 0.4413 -4.8550 20 6 2.3905 0.1981 -6.0386 21 6 2.0228 -0.3795 -7.2036 22 7 3.1291 -0.4074 -8.0079 23 6 3.3373 -0.8684 -9.2768 24 6 4.5579 -0.7783 -9.8493 25 9 4.7481 -1.2393 -11.1049 26 6 5.6310 -0.2066 -9.1431 27 6 5.4352 0.2568 -7.8794 28 6 4.1566 0.1540 -7.2960 29 7 3.6861 0.5122 -6.1091 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6319 1.1525 34 1 3.2477 -2.3965 4.2420 35 1 2.0698 -2.6550 -0.3004 36 1 0.5488 -2.2723 -1.1422 37 1 1.9989 -2.7093 -2.0779 38 1 0.6117 0.3703 -2.3794 39 1 0.5103 0.0040 -5.0475 40 1 1.3837 1.5141 -4.6940 41 1 1.0387 -0.7474 -7.4540 42 1 2.5189 -1.3085 -9.8273 43 1 6.6060 -0.1349 -9.6023 44 1 6.2522 0.6982 -7.3280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674711034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:08 Heat of formation + Delta-G solvation = 27.272836 kcal Electronic energy + Delta-G solvation = -27505.369933 eV Core-core repulsion = 23374.357195 eV Total energy + Delta-G solvation = -4131.012738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.52279 -43.14245 -39.61514 -37.64471 -36.72080 -34.09706 -33.81099 -32.30227 -31.49495 -29.57987 -29.26260 -28.17228 -27.79550 -24.42879 -24.09665 -23.19299 -23.10007 -21.40860 -20.06636 -19.13744 -18.70874 -18.02771 -17.50340 -17.01373 -16.74189 -16.49049 -15.62469 -15.53061 -15.38048 -15.13503 -14.84788 -14.57866 -14.23187 -14.12338 -13.84517 -13.55337 -13.42510 -13.14312 -12.75375 -12.59264 -12.21480 -12.09866 -11.86562 -11.59724 -11.55801 -11.43213 -11.25192 -10.91991 -10.81645 -10.42076 -10.29059 -10.20385 -9.92204 -9.72777 -9.52214 -8.93599 -8.90968 -8.68159 -8.26272 -6.97772 -5.76441 -3.05648 0.18710 0.76080 2.06600 2.39361 2.91631 3.06796 3.43895 3.47832 3.51381 3.52240 3.56851 3.74650 3.93624 4.27538 4.40977 4.60465 4.67838 4.84831 5.00310 5.10635 5.20272 5.32490 5.36913 5.42524 5.45258 5.52986 5.56665 5.66835 5.70121 5.88447 5.99683 6.11427 6.20074 6.24034 6.34320 6.44264 6.54776 6.63447 6.68112 6.76228 7.00425 7.11394 7.60958 7.71160 7.80721 8.41937 8.54070 9.53437 10.09561 10.44194 11.46283 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027422 B = 0.001913 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.832423 B =14636.784481 C =15040.293074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.720 5.720 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.138 3.862 14 H 0.087 0.913 15 C -0.158 4.158 16 N -0.723 5.723 17 C 0.512 3.488 18 O -0.522 6.522 19 C -0.063 4.063 20 C 0.084 3.916 21 C -0.081 4.081 22 N -0.352 5.352 23 C 0.017 3.983 24 C 0.082 3.918 25 F -0.123 7.123 26 C -0.142 4.142 27 C -0.034 4.034 28 C 0.206 3.794 29 N -0.445 5.445 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.052 0.948 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.396 0.604 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.187 0.813 42 H 0.172 0.828 43 H 0.155 0.845 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 4.004 -29.525 29.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.033 3.967 14 H 0.105 0.895 15 C -0.216 4.216 16 N -0.376 5.376 17 C 0.297 3.703 18 O -0.397 6.397 19 C -0.104 4.104 20 C -0.050 4.050 21 C -0.212 4.212 22 N -0.024 5.024 23 C -0.106 4.106 24 C 0.060 3.940 25 F -0.102 7.102 26 C -0.166 4.166 27 C -0.054 4.054 28 C -0.037 4.037 29 N -0.163 5.163 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.232 0.768 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.204 0.796 42 H 0.189 0.811 43 H 0.172 0.828 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.184 4.032 -28.839 29.201 hybrid contribution -0.803 -0.221 0.058 0.835 sum -2.987 3.811 -28.781 29.185 Atomic orbital electron populations 1.22529 0.99365 1.01192 0.99701 1.20366 0.92123 0.95618 0.86210 0.93068 1.42468 1.78194 1.10799 1.04873 1.19274 1.36616 0.93953 0.87122 0.91067 1.24749 1.02078 0.96007 0.98119 1.69665 1.50826 1.08662 1.28838 0.86114 0.77319 0.78764 0.83959 1.20563 1.21930 1.21868 1.21277 0.99035 0.92674 0.83693 0.89523 1.22131 1.01344 0.96030 1.02133 1.46211 1.25846 1.57222 1.08362 1.20221 0.85214 0.80699 0.84210 1.90750 1.21814 1.41835 1.85258 1.20046 0.97454 1.03480 0.89404 1.20142 0.91401 0.99605 0.93898 1.22383 0.92261 1.13968 0.92624 1.42434 1.11032 1.38568 1.10356 1.21144 0.98941 1.04611 0.85937 1.16596 0.93404 1.02256 0.81745 1.91557 1.95520 1.86677 1.36416 1.21061 0.99549 1.01103 0.94918 1.20220 0.93531 0.97888 0.93763 1.21036 0.90755 1.02418 0.89504 1.70715 1.09184 1.22284 1.14148 0.92485 0.94803 0.92865 0.77799 0.93519 0.90665 0.92619 0.93260 0.76821 0.87297 0.87112 0.79626 0.81063 0.82752 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.01 37.16 0.33 -2.43 16 2 C 0.17 3.23 2.93 -67.93 -0.20 3.03 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.72 -17.75 5.03 -53.43 -0.27 -18.02 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 9 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 13 C 0.14 2.41 2.62 -67.93 -0.18 2.23 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 15 C -0.16 -2.72 9.00 37.16 0.33 -2.38 16 16 N -0.72 -9.83 4.99 -53.80 -0.27 -10.10 16 17 C 0.51 7.40 7.78 -10.98 -0.09 7.32 16 18 O -0.52 -10.10 15.22 5.56 0.08 -10.02 16 19 C -0.06 -0.61 6.26 -29.03 -0.18 -0.80 16 20 C 0.08 1.01 5.85 -82.98 -0.49 0.53 16 21 C -0.08 -0.77 11.63 -16.44 -0.19 -0.96 16 22 N -0.35 -3.54 2.95 -62.59 -0.18 -3.72 16 23 C 0.02 0.13 10.91 -16.53 -0.18 -0.05 16 24 C 0.08 0.61 7.25 -39.79 -0.29 0.33 16 25 F -0.12 -0.91 17.26 2.25 0.04 -0.88 16 26 C -0.14 -0.99 10.05 -39.49 -0.40 -1.39 16 27 C -0.03 -0.30 10.10 -39.37 -0.40 -0.70 16 28 C 0.21 2.49 7.81 -156.05 -1.22 1.28 16 29 N -0.44 -6.52 10.67 -9.01 -0.10 -6.62 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.42 6.29 -51.93 -0.33 0.09 16 32 H 0.05 0.89 6.57 -51.93 -0.34 0.55 16 33 H 0.39 10.09 5.77 -40.82 -0.24 9.86 16 34 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.07 1.45 6.29 -51.93 -0.33 1.13 16 36 H 0.05 0.87 6.57 -51.93 -0.34 0.53 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 4.19 6.58 -40.82 -0.27 3.92 16 39 H 0.11 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.19 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -36.32 371.30 -8.36 -44.68 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.58 Total: 10.27 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.38 Total: -1.17 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.09 Total: -65.84 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.32 -8.36 -44.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674711034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.952 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds