Wall clock time and date at job start Tue Mar 31 2020 19:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46493 * 109.47177 * 120.00339 * 2 1 3 5 5 C 1.36936 * 120.00076 * 274.99567 * 4 2 1 6 6 H 1.08002 * 120.00300 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99914 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00446 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47005 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46943 * 120.00241 * 9 7 5 12 12 H 1.48494 * 109.47173 * 240.00489 * 9 7 5 13 13 C 1.52997 * 109.46921 * 240.00379 * 2 1 3 14 14 H 1.09000 * 109.47140 * 175.00145 * 13 2 1 15 15 C 1.53006 * 109.47164 * 295.00093 * 13 2 1 16 16 N 1.46500 * 109.47204 * 55.00018 * 13 2 1 17 17 C 1.34779 * 119.99741 * 155.00342 * 16 13 2 18 18 O 1.21279 * 120.00369 * 359.97438 * 17 16 13 19 19 C 1.50708 * 119.99762 * 179.97438 * 17 16 13 20 20 C 1.50697 * 109.47045 * 179.97438 * 19 17 16 21 21 C 1.35133 * 125.69435 * 124.72166 * 20 19 17 22 22 N 1.36804 * 107.18719 * 179.84323 * 21 20 19 23 23 C 1.36600 * 132.54909 * 180.11163 * 22 21 20 24 24 C 1.35128 * 120.57948 * 180.33416 * 23 22 21 25 25 F 1.35098 * 119.87929 * 179.97438 * 24 23 22 26 26 C 1.40607 * 120.24718 * 359.97438 * 24 23 22 27 27 C 1.36013 * 119.68765 * 359.97438 * 26 24 23 28 28 C 1.37031 * 107.01438 * 0.41158 * 22 21 20 29 29 N 1.32605 * 108.03328 * 359.74428 * 28 22 21 30 30 H 1.09004 * 109.46964 * 299.99798 * 1 2 3 31 31 H 1.08998 * 109.47141 * 59.99120 * 1 2 3 32 32 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 33 33 H 0.97008 * 120.00184 * 94.99888 * 4 2 1 34 34 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46998 * 299.99705 * 15 13 2 36 36 H 1.09000 * 109.47050 * 59.99996 * 15 13 2 37 37 H 1.09001 * 109.46801 * 180.02562 * 15 13 2 38 38 H 0.96997 * 120.00110 * 334.99611 * 16 13 2 39 39 H 1.08994 * 109.47136 * 300.00021 * 19 17 16 40 40 H 1.09002 * 109.46457 * 59.99935 * 19 17 16 41 41 H 1.08004 * 126.40085 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.70838 * 0.35249 * 23 22 21 43 43 H 1.08004 * 120.15949 * 180.02562 * 26 24 23 44 44 H 1.08001 * 120.31494 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4244 7 6 2.6114 -0.6622 3.5091 8 7 2.9244 -1.9392 3.4500 9 14 2.7893 0.2695 5.1185 10 1 2.3745 1.6817 4.9213 11 1 1.9282 -0.3592 6.1521 12 1 4.2060 0.2265 5.5614 13 6 2.0400 -0.7212 -1.2493 14 1 3.1263 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1881 16 7 1.4558 -0.1035 -2.4424 17 6 2.0912 -0.1936 -3.6276 18 8 3.1467 -0.7857 -3.7063 19 6 1.4900 0.4413 -4.8550 20 6 2.3905 0.1981 -6.0386 21 6 2.0228 -0.3795 -7.2036 22 7 3.1291 -0.4074 -8.0079 23 6 3.3373 -0.8684 -9.2768 24 6 4.5579 -0.7783 -9.8493 25 9 4.7481 -1.2393 -11.1049 26 6 5.6310 -0.2066 -9.1431 27 6 5.4352 0.2568 -7.8794 28 6 4.1566 0.1540 -7.2960 29 7 3.6861 0.5122 -6.1091 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6319 1.1525 34 1 3.2477 -2.3965 4.2420 35 1 2.0698 -2.6550 -0.3004 36 1 0.5488 -2.2723 -1.1422 37 1 1.9989 -2.7093 -2.0779 38 1 0.6117 0.3703 -2.3794 39 1 0.5103 0.0040 -5.0475 40 1 1.3837 1.5141 -4.6940 41 1 1.0387 -0.7474 -7.4540 42 1 2.5189 -1.3085 -9.8273 43 1 6.6060 -0.1349 -9.6023 44 1 6.2522 0.6982 -7.3280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674711034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:54 Heat of formation + Delta-G solvation = 2.786507 kcal Electronic energy + Delta-G solvation = -27506.431740 eV Core-core repulsion = 23374.357195 eV Total energy + Delta-G solvation = -4132.074545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 14.78 seconds Orbital eigenvalues (eV) -50.09411 -43.84433 -40.83357 -38.59831 -37.97339 -35.52825 -34.76539 -33.66025 -32.74579 -30.92902 -30.08068 -29.77472 -28.61591 -26.14537 -25.13061 -24.48417 -23.80817 -22.41237 -21.09929 -20.59349 -19.49690 -19.33137 -18.65488 -18.12400 -17.39359 -17.23386 -16.71697 -16.63735 -16.31643 -16.14569 -16.03261 -15.73835 -15.55603 -15.25863 -15.02834 -14.66037 -14.48526 -14.32549 -13.95983 -13.86396 -13.48432 -13.13574 -13.04759 -12.92858 -12.81214 -12.64924 -12.62198 -12.33250 -12.06957 -12.05639 -11.97109 -11.64716 -11.55215 -11.10255 -10.95220 -10.76164 -9.98840 -9.62872 -9.01671 -8.93108 -7.92998 -5.21573 -0.41613 0.11020 1.42816 1.47951 1.49132 1.58751 1.67719 1.81527 2.26067 2.46354 2.60907 2.93282 3.11632 3.36265 3.41029 3.74491 3.80644 3.90270 4.00243 4.00897 4.10006 4.14023 4.34541 4.37984 4.47086 4.60375 4.64513 4.69338 4.74827 4.80346 4.83410 4.92019 4.93448 5.01397 5.09068 5.23101 5.30757 5.39331 5.52240 5.54641 5.65228 5.68294 5.99044 6.29509 6.72869 6.87677 7.35591 7.45484 8.11033 8.33526 9.30901 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.027422 B = 0.001913 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.832423 B =14636.784481 C =15040.293074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.164 3.836 3 H 0.045 0.955 4 N -0.735 5.735 5 C -0.235 4.235 6 H 0.078 0.922 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.293 1.293 12 H -0.298 1.298 13 C 0.152 3.848 14 H 0.046 0.954 15 C -0.147 4.147 16 N -0.708 5.708 17 C 0.508 3.492 18 O -0.577 6.577 19 C -0.051 4.051 20 C 0.048 3.952 21 C -0.070 4.070 22 N -0.357 5.357 23 C 0.020 3.980 24 C 0.076 3.924 25 F -0.121 7.121 26 C -0.124 4.124 27 C -0.060 4.060 28 C 0.181 3.819 29 N -0.502 5.502 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.415 0.585 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.229 0.771 42 H 0.205 0.795 43 H 0.182 0.818 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 4.971 -31.930 32.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.055 3.945 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.367 4.367 6 H 0.096 0.904 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.802 3.198 10 H -0.188 1.188 11 H -0.221 1.221 12 H -0.225 1.225 13 C 0.046 3.954 14 H 0.064 0.936 15 C -0.205 4.205 16 N -0.363 5.363 17 C 0.296 3.704 18 O -0.456 6.456 19 C -0.091 4.091 20 C -0.085 4.085 21 C -0.201 4.201 22 N -0.028 5.028 23 C -0.103 4.103 24 C 0.053 3.947 25 F -0.100 7.100 26 C -0.148 4.148 27 C -0.080 4.080 28 C -0.062 4.062 29 N -0.222 5.222 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.254 0.746 39 H 0.174 0.826 40 H 0.149 0.851 41 H 0.245 0.755 42 H 0.222 0.778 43 H 0.199 0.801 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.592 5.062 -31.289 32.027 hybrid contribution -0.037 -0.510 0.620 0.804 sum -4.629 4.552 -30.670 31.349 Atomic orbital electron populations 1.22342 0.96172 1.01686 1.01384 1.20557 0.94165 0.94723 0.85011 0.93740 1.42689 1.78658 1.10524 1.05919 1.19664 1.34673 0.94279 0.88054 0.90385 1.25562 1.03082 0.96930 1.01545 1.69825 1.52761 1.10260 1.29326 0.85081 0.76587 0.78283 0.79862 1.18849 1.22071 1.22522 1.20773 0.96895 0.93051 0.84681 0.93566 1.22003 1.02388 0.95483 1.00634 1.45961 1.26362 1.56925 1.07030 1.21133 0.84382 0.79634 0.85291 1.90736 1.24401 1.44344 1.86094 1.20144 0.98526 1.04446 0.85987 1.20619 0.91141 1.01051 0.95641 1.23001 0.93383 1.12168 0.91571 1.42612 1.10803 1.38382 1.11050 1.21662 1.00053 1.03590 0.85033 1.16707 0.93717 1.02381 0.81857 1.91568 1.95521 1.86653 1.36232 1.21360 1.00676 0.98853 0.93890 1.20400 0.93071 0.99708 0.94819 1.21415 0.92175 1.03039 0.89588 1.70623 1.11101 1.24515 1.15991 0.93965 0.89954 0.92946 0.79072 0.94140 0.93450 0.90461 0.93432 0.74550 0.82582 0.85132 0.75466 0.77777 0.80063 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.01 71.98 0.65 -4.12 16 2 C 0.16 6.28 2.93 44.99 0.13 6.41 16 3 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 4 N -0.74 -36.96 5.03 -322.95 -1.63 -38.59 16 5 C -0.23 -13.01 9.93 84.03 0.83 -12.17 16 6 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 8 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 9 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 10 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 13 C 0.15 5.35 2.62 44.99 0.12 5.47 16 14 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 15 C -0.15 -5.08 9.00 71.98 0.65 -4.43 16 16 N -0.71 -18.07 4.99 -442.52 -2.21 -20.28 16 17 C 0.51 14.21 7.78 87.66 0.68 14.89 16 18 O -0.58 -23.02 15.22 -3.03 -0.05 -23.06 16 19 C -0.05 -0.86 6.26 29.10 0.18 -0.68 16 20 C 0.05 1.11 5.85 41.59 0.24 1.35 16 21 C -0.07 -1.16 11.63 83.20 0.97 -0.19 16 22 N -0.36 -6.61 2.95 -351.94 -1.04 -7.65 16 23 C 0.02 0.24 10.91 83.23 0.91 1.15 16 24 C 0.08 0.98 7.25 22.13 0.16 1.14 16 25 F -0.12 -1.52 17.26 44.97 0.78 -0.74 16 26 C -0.12 -1.57 10.05 22.33 0.22 -1.34 16 27 C -0.06 -1.08 10.10 22.41 0.23 -0.86 16 28 C 0.18 4.43 7.81 134.10 1.05 5.47 16 29 N -0.50 -15.07 10.67 -182.42 -1.95 -17.01 16 30 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.08 1.70 6.29 -2.39 -0.02 1.68 16 32 H 0.05 1.62 6.57 -2.39 -0.02 1.61 16 33 H 0.38 20.37 5.77 -92.70 -0.54 19.83 16 34 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.05 1.91 6.29 -2.39 -0.02 1.89 16 36 H 0.08 2.31 6.57 -2.39 -0.02 2.29 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.42 7.28 6.58 -92.71 -0.61 6.67 16 39 H 0.16 1.09 8.10 -2.39 -0.02 1.07 16 40 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.23 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.21 1.03 8.06 -2.91 -0.02 1.00 16 43 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -84.47 371.30 3.63 -80.85 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.09 Total: 29.83 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 7.49 Total: 7.98 kcal Atomic # 7 Polarization: -136.97 SS G_CDS: -6.53 Total: -143.50 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.78 Total: -0.74 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -84.47 3.63 -80.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674711034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.632 kcal (2) G-P(sol) polarization free energy of solvation -84.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.78 seconds