Wall clock time and date at job start Tue Mar 31 2020 19:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.36932 * 120.00140 * 84.99833 * 4 2 1 6 6 H 1.07994 * 120.00447 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00145 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47005 * 89.99771 * 9 7 5 11 11 H 1.48503 * 109.46914 * 209.99621 * 9 7 5 12 12 H 1.48498 * 109.47180 * 329.99943 * 9 7 5 13 13 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 14 14 H 1.09000 * 109.46875 * 184.99989 * 13 2 1 15 15 C 1.53000 * 109.47060 * 65.00062 * 13 2 1 16 16 N 1.46500 * 109.47295 * 305.00389 * 13 2 1 17 17 C 1.34771 * 120.00053 * 205.00025 * 16 13 2 18 18 O 1.21287 * 120.00088 * 359.97438 * 17 16 13 19 19 C 1.50702 * 120.00374 * 179.97438 * 17 16 13 20 20 C 1.50694 * 109.47645 * 179.97438 * 19 17 16 21 21 C 1.35128 * 125.69521 * 124.99568 * 20 19 17 22 22 N 1.36807 * 107.18627 * 180.02562 * 21 20 19 23 23 C 1.36606 * 132.54504 * 179.97438 * 22 21 20 24 24 C 1.35129 * 120.57728 * 179.97438 * 23 22 21 25 25 F 1.35101 * 119.87955 * 180.02562 * 24 23 22 26 26 C 1.40619 * 120.24556 * 0.04752 * 24 23 22 27 27 C 1.36002 * 119.68621 * 359.97438 * 26 24 23 28 28 C 1.37028 * 107.01436 * 0.02562 * 22 21 20 29 29 N 1.32610 * 108.03509 * 359.73373 * 28 22 21 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 34 34 H 0.97001 * 119.99679 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47185 * 179.97438 * 15 13 2 36 36 H 1.09000 * 109.47227 * 300.00275 * 15 13 2 37 37 H 1.09006 * 109.46717 * 59.99823 * 15 13 2 38 38 H 0.97002 * 120.00109 * 24.99709 * 16 13 2 39 39 H 1.09004 * 109.47198 * 300.00319 * 19 17 16 40 40 H 1.08999 * 109.46642 * 59.99744 * 19 17 16 41 41 H 1.08004 * 126.40725 * 0.04706 * 21 20 19 42 42 H 1.08001 * 119.70925 * 0.02562 * 23 22 21 43 43 H 1.07998 * 120.15226 * 179.97438 * 26 24 23 44 44 H 1.08002 * 120.31408 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1492 -0.0073 -2.3757 6 1 1.8920 1.0405 -2.4243 7 6 2.6114 -0.6617 -3.5093 8 7 2.9245 -1.9388 -3.4503 9 14 2.7892 0.2701 -5.1185 10 1 4.1513 0.8552 -5.2039 11 1 2.5784 -0.6613 -6.2557 12 1 1.7791 1.3572 -5.1752 13 6 2.0401 -0.7213 1.2492 14 1 3.1264 -0.6443 1.2951 15 6 1.6353 -2.1955 1.1879 16 7 1.4559 -0.1038 2.4424 17 6 2.0912 -0.1939 3.6275 18 8 3.1464 -0.7867 3.7063 19 6 1.4906 0.4417 4.8548 20 6 2.3904 0.1973 6.0387 21 6 2.9042 1.1494 6.8484 22 7 3.6623 0.5117 7.7919 23 6 4.4025 0.9685 8.8452 24 6 5.0710 0.1052 9.6413 25 9 5.7984 0.5723 10.6795 26 6 5.0128 -1.2777 9.3929 27 6 4.2792 -1.7438 8.3467 28 6 3.5880 -0.8305 7.5257 29 7 2.8095 -0.9962 6.4651 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 3.2479 -2.3959 -4.2423 35 1 1.9990 -2.7094 2.0776 36 1 0.5490 -2.2724 1.1419 37 1 2.0700 -2.6549 0.3001 38 1 0.6118 0.3700 2.3794 39 1 1.3850 1.5146 4.6936 40 1 0.5107 0.0051 5.0474 41 1 2.7456 2.2146 6.7662 42 1 4.4532 2.0289 9.0439 43 1 5.5480 -1.9663 10.0298 44 1 4.2271 -2.8039 8.1469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674711036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:20 Heat of formation + Delta-G solvation = 2.876290 kcal Electronic energy + Delta-G solvation = -27507.541963 eV Core-core repulsion = 23375.471312 eV Total energy + Delta-G solvation = -4132.070652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.09500 -43.84319 -40.83339 -38.59602 -37.97188 -35.52379 -34.76365 -33.65728 -32.74462 -30.92874 -30.07826 -29.77238 -28.61937 -26.14114 -25.13280 -24.47915 -23.80821 -22.41412 -21.09850 -20.59009 -19.48755 -19.33376 -18.65845 -18.11869 -17.38010 -17.22078 -16.80866 -16.60823 -16.28984 -16.13214 -16.00804 -15.74530 -15.46683 -15.33634 -15.06413 -14.67121 -14.48436 -14.34533 -13.91466 -13.82192 -13.51340 -13.11871 -13.05319 -12.95571 -12.78083 -12.64855 -12.60263 -12.33306 -12.12111 -12.05668 -11.96761 -11.63817 -11.54937 -11.10773 -10.93660 -10.76388 -9.98764 -9.62961 -9.01348 -8.93144 -7.92182 -5.20965 -0.41556 0.11050 1.42563 1.48347 1.50328 1.58369 1.67607 1.81645 2.26056 2.46156 2.61459 2.93390 3.11350 3.36310 3.41636 3.74468 3.80553 3.90671 3.99907 4.01637 4.10953 4.12380 4.35562 4.37525 4.47203 4.60408 4.64088 4.69203 4.74954 4.80386 4.83548 4.92155 4.93222 5.01471 5.08630 5.23225 5.30487 5.39415 5.52436 5.54596 5.65126 5.68284 5.98786 6.29908 6.72775 6.87055 7.35973 7.45360 8.11633 8.33959 9.31533 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025437 B = 0.001908 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.480065 B =14668.961087 C =14854.117905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.049 0.951 4 N -0.736 5.736 5 C -0.235 4.235 6 H 0.080 0.920 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.973 3.027 10 H -0.291 1.291 11 H -0.298 1.298 12 H -0.266 1.266 13 C 0.153 3.847 14 H 0.049 0.951 15 C -0.148 4.148 16 N -0.708 5.708 17 C 0.509 3.491 18 O -0.577 6.577 19 C -0.051 4.051 20 C 0.049 3.951 21 C -0.072 4.072 22 N -0.357 5.357 23 C 0.019 3.981 24 C 0.076 3.924 25 F -0.121 7.121 26 C -0.124 4.124 27 C -0.059 4.059 28 C 0.181 3.819 29 N -0.500 5.500 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.415 0.585 39 H 0.154 0.846 40 H 0.133 0.867 41 H 0.228 0.772 42 H 0.204 0.796 43 H 0.182 0.818 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 9.034 30.906 32.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.067 0.933 4 N -0.378 5.378 5 C -0.367 4.367 6 H 0.097 0.903 7 C -0.272 4.272 8 N -0.622 5.622 9 Si 0.802 3.198 10 H -0.218 1.218 11 H -0.225 1.225 12 H -0.191 1.191 13 C 0.047 3.953 14 H 0.067 0.933 15 C -0.207 4.207 16 N -0.363 5.363 17 C 0.296 3.704 18 O -0.456 6.456 19 C -0.091 4.091 20 C -0.084 4.084 21 C -0.203 4.203 22 N -0.029 5.029 23 C -0.104 4.104 24 C 0.053 3.947 25 F -0.100 7.100 26 C -0.148 4.148 27 C -0.079 4.079 28 C -0.062 4.062 29 N -0.220 5.220 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.209 0.791 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.255 0.745 39 H 0.172 0.828 40 H 0.151 0.849 41 H 0.244 0.756 42 H 0.221 0.779 43 H 0.200 0.800 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.803 8.100 30.501 31.682 hybrid contribution 0.576 0.562 -0.853 1.173 sum -2.227 8.662 29.647 30.967 Atomic orbital electron populations 1.22352 0.96366 1.01561 1.01402 1.20556 0.94022 0.94851 0.84904 0.93302 1.42698 1.78643 1.10527 1.05970 1.19631 1.34735 0.94298 0.88033 0.90261 1.25580 1.03115 0.96910 1.01591 1.69832 1.52712 1.10285 1.29392 0.85139 0.77787 0.77456 0.79369 1.21815 1.22494 1.19060 1.20771 0.96983 0.92839 0.84723 0.93282 1.22009 1.02240 0.95849 1.00557 1.45960 1.26374 1.56901 1.07037 1.21128 0.84498 0.79636 0.85167 1.90738 1.24906 1.44030 1.85913 1.20139 0.98316 1.05102 0.85542 1.20609 1.01161 0.88443 0.98190 1.22998 1.02686 1.01025 0.93594 1.42608 1.31441 1.08866 1.19955 1.21658 0.97254 1.02239 0.89275 1.16718 0.97038 0.92315 0.88582 1.91568 1.74823 1.89032 1.54567 1.21363 1.00511 0.94050 0.98865 1.20405 0.94905 1.00221 0.92373 1.21435 1.03437 0.83486 0.97852 1.70617 1.14328 1.27506 1.09573 0.93238 0.89947 0.93881 0.79132 0.94169 0.93671 0.90747 0.93367 0.74546 0.82802 0.84914 0.75604 0.77876 0.80023 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 9.01 71.98 0.65 -4.17 16 2 C 0.17 6.25 2.93 44.99 0.13 6.38 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.74 -36.81 5.03 -322.94 -1.63 -38.44 16 5 C -0.24 -12.92 9.93 84.03 0.83 -12.08 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 8 N -0.97 -60.25 13.06 21.65 0.28 -59.96 16 9 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.15 5.38 2.62 44.99 0.12 5.49 16 14 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 15 C -0.15 -5.32 9.00 71.98 0.65 -4.67 16 16 N -0.71 -18.05 4.99 -442.54 -2.21 -20.26 16 17 C 0.51 14.20 7.79 87.66 0.68 14.89 16 18 O -0.58 -23.00 15.23 -3.05 -0.05 -23.05 16 19 C -0.05 -0.86 6.26 29.10 0.18 -0.68 16 20 C 0.05 1.12 5.84 41.59 0.24 1.37 16 21 C -0.07 -1.21 11.63 83.20 0.97 -0.24 16 22 N -0.36 -6.68 2.95 -351.92 -1.04 -7.72 16 23 C 0.02 0.24 10.92 83.23 0.91 1.15 16 24 C 0.08 0.98 7.25 22.13 0.16 1.15 16 25 F -0.12 -1.54 17.26 44.97 0.78 -0.76 16 26 C -0.12 -1.55 10.05 22.33 0.22 -1.32 16 27 C -0.06 -1.05 10.10 22.41 0.23 -0.82 16 28 C 0.18 4.39 7.81 134.10 1.05 5.44 16 29 N -0.50 -14.79 10.68 -182.42 -1.95 -16.74 16 30 H 0.05 1.57 6.57 -2.39 -0.02 1.55 16 31 H 0.08 1.71 6.29 -2.39 -0.02 1.69 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.37 20.37 5.77 -92.70 -0.54 19.83 16 34 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 2.35 6.57 -2.39 -0.02 2.33 16 37 H 0.05 1.98 6.29 -2.38 -0.02 1.97 16 38 H 0.42 7.27 6.58 -92.71 -0.61 6.66 16 39 H 0.15 1.16 8.10 -2.39 -0.02 1.14 16 40 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.23 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 43 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -83.84 371.32 3.62 -80.22 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.09 Total: 30.63 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 7.49 Total: 7.73 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -6.54 Total: -143.12 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.78 Total: -0.76 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -83.84 3.62 -80.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674711036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.092 kcal (2) G-P(sol) polarization free energy of solvation -83.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds