Wall clock time and date at job start Tue Mar 31 2020 23:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99859 * 2 1 4 4 H 1.48494 * 109.47237 * 270.00492 * 3 2 1 5 5 H 1.48494 * 109.47173 * 30.00419 * 3 2 1 6 6 H 1.48498 * 109.46846 * 150.00549 * 3 2 1 7 7 C 1.37874 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99984 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00136 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47265 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47245 * 54.99832 * 11 10 9 13 13 N 1.46503 * 109.46794 * 295.00033 * 11 10 9 14 14 C 1.34782 * 119.99785 * 155.00119 * 13 11 10 15 15 O 1.21586 * 119.99983 * 359.97438 * 14 13 11 16 16 N 1.34774 * 120.00026 * 180.02562 * 14 13 11 17 17 C 1.46499 * 120.00370 * 179.97438 * 16 14 13 18 18 H 1.09000 * 110.82885 * 37.18868 * 17 16 14 19 19 C 1.54996 * 110.90510 * 273.54719 * 17 16 14 20 20 O 1.44386 * 103.48741 * 204.77214 * 19 17 16 21 21 C 1.43741 * 106.97241 * 40.06302 * 20 19 17 22 22 C 1.54096 * 107.29619 * 333.48296 * 21 20 19 23 23 H 1.08995 * 110.49060 * 243.35548 * 22 21 20 24 24 O 1.42904 * 110.48948 * 120.83806 * 22 21 20 25 25 C 1.50699 * 109.47217 * 175.00342 * 11 10 9 26 26 C 1.38231 * 120.00467 * 79.72485 * 25 11 10 27 27 C 1.38228 * 119.99964 * 179.78698 * 26 25 11 28 28 C 1.38238 * 120.00148 * 0.46492 * 27 26 25 29 29 C 1.38229 * 119.99967 * 359.76526 * 28 27 26 30 30 C 1.38239 * 120.00067 * 0.02562 * 29 28 27 31 31 H 0.97001 * 120.00035 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47345 * 59.99509 * 9 7 2 33 33 H 1.08997 * 109.46768 * 299.99330 * 9 7 2 34 34 H 1.09009 * 109.47023 * 59.99892 * 10 9 7 35 35 H 1.09005 * 109.47105 * 299.99895 * 10 9 7 36 36 H 0.97003 * 120.00520 * 334.99483 * 13 11 10 37 37 H 0.97002 * 119.99712 * 0.02562 * 16 14 13 38 38 H 1.09003 * 110.61789 * 86.27429 * 19 17 16 39 39 H 1.08998 * 110.62160 * 323.27320 * 19 17 16 40 40 H 1.09004 * 109.88176 * 92.90824 * 21 20 19 41 41 H 1.09000 * 109.87721 * 214.05550 * 21 20 19 42 42 H 0.96703 * 113.99790 * 61.45506 * 24 22 21 43 43 H 1.07998 * 119.99453 * 0.02562 * 26 25 11 44 44 H 1.08004 * 120.00175 * 180.25251 * 27 26 25 45 45 H 1.08004 * 119.99904 * 179.79377 * 28 27 26 46 46 H 1.07999 * 120.00068 * 180.02562 * 29 28 27 47 47 H 1.07995 * 120.00121 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0022 12 1 5.9156 -2.0468 0.8390 13 7 6.0388 -2.0532 -1.2547 14 6 7.2608 -1.4867 -1.3037 15 8 7.9586 -1.4593 -0.3083 16 7 7.7089 -0.9497 -2.4557 17 6 9.0369 -0.3334 -2.5089 18 1 9.7469 -0.8890 -1.8963 19 6 8.9748 1.1528 -2.0730 20 8 10.1214 1.7425 -2.7228 21 6 10.2013 1.1663 -4.0372 22 6 9.5363 -0.2222 -3.9700 23 1 10.2641 -1.0046 -4.1849 24 8 8.4397 -0.2964 -4.8832 25 6 6.0540 -4.0519 0.1216 26 6 6.0822 -4.8750 -0.9885 27 6 6.5472 -6.1719 -0.8757 28 6 6.9750 -6.6487 0.3493 29 6 6.9424 -5.8271 1.4604 30 6 6.4814 -4.5288 1.3468 31 1 -0.4850 0.8400 0.0004 32 1 3.8753 -0.6803 0.8887 33 1 3.8745 -0.6801 -0.8912 34 1 3.6579 -3.1506 -0.8908 35 1 3.6586 -3.1501 0.8893 36 1 5.4821 -2.0748 -2.0488 37 1 7.1518 -0.9705 -3.2495 38 1 9.0609 1.2390 -0.9899 39 1 8.0535 1.6176 -2.4241 40 1 9.6713 1.7968 -4.7512 41 1 11.2451 1.0634 -4.3340 42 1 8.6902 -0.1752 -5.8093 43 1 5.7445 -4.5036 -1.9447 44 1 6.5730 -6.8137 -1.7439 45 1 7.3352 -7.6630 0.4381 46 1 7.2770 -6.1994 2.4174 47 1 6.4555 -3.8870 2.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686607718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:28 Heat of formation + Delta-G solvation = -99.104414 kcal Electronic energy + Delta-G solvation = -29173.098592 eV Core-core repulsion = 25127.773280 eV Total energy + Delta-G solvation = -4045.325313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -40.59247 -39.71884 -38.67161 -36.55374 -35.92043 -34.27410 -33.14586 -31.70322 -30.72559 -30.61350 -29.78066 -28.61365 -26.72318 -23.67964 -23.29454 -22.48980 -21.81010 -20.96132 -20.58226 -20.00414 -18.68503 -17.81089 -17.05260 -16.95118 -16.49755 -16.09966 -15.63849 -15.52197 -15.35595 -14.91861 -14.48985 -14.37162 -14.18712 -13.94084 -13.64076 -13.35498 -13.29177 -13.19633 -12.91868 -12.65705 -12.49046 -12.40548 -11.86716 -11.83783 -11.44661 -11.23189 -11.06831 -11.01271 -10.76102 -10.58514 -10.20022 -10.10584 -9.99481 -9.87019 -9.76483 -9.22583 -9.15001 -8.76981 -8.69348 -8.54675 -8.46717 -6.06370 -4.04716 1.51208 1.57090 2.65461 3.29148 3.33173 3.37895 3.43242 3.53010 3.74264 3.96159 4.07969 4.38479 4.43864 4.47147 4.56726 4.89778 4.95996 4.99858 5.03592 5.11912 5.21757 5.26553 5.28005 5.36002 5.51214 5.60425 5.64089 5.68810 5.74687 5.81123 6.08714 6.16757 6.26681 6.30467 6.45345 6.53128 6.61319 6.63955 6.67766 6.77711 6.89259 7.07883 7.14674 7.16493 7.25339 7.38331 7.76172 8.18700 8.50738 8.76924 8.98611 9.56361 11.06923 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.006565 B = 0.004721 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4264.280427 B = 5928.980975 C = 9268.979349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.104 4.104 11 C 0.198 3.802 12 H 0.094 0.906 13 N -0.727 5.727 14 C 0.706 3.294 15 O -0.592 6.592 16 N -0.731 5.731 17 C 0.146 3.854 18 H 0.112 0.888 19 C 0.033 3.967 20 O -0.370 6.370 21 C 0.016 3.984 22 C 0.063 3.937 23 H 0.082 0.918 24 O -0.556 6.556 25 C -0.079 4.079 26 C -0.105 4.105 27 C -0.124 4.124 28 C -0.130 4.130 29 C -0.122 4.122 30 C -0.105 4.105 31 H 0.263 0.737 32 H 0.016 0.984 33 H 0.012 0.988 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.398 0.602 37 H 0.408 0.592 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.386 0.614 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.751 -5.964 -9.372 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.142 4.142 11 C 0.093 3.907 12 H 0.112 0.888 13 N -0.381 5.381 14 C 0.406 3.594 15 O -0.471 6.471 16 N -0.389 5.389 17 C 0.039 3.961 18 H 0.130 0.870 19 C -0.045 4.045 20 O -0.288 6.288 21 C -0.061 4.061 22 C 0.003 3.997 23 H 0.099 0.901 24 O -0.363 6.363 25 C -0.081 4.081 26 C -0.123 4.123 27 C -0.143 4.143 28 C -0.148 4.148 29 C -0.140 4.140 30 C -0.124 4.124 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.244 0.756 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.235 0.765 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.033 -5.749 -7.809 23.161 hybrid contribution 0.004 0.856 -1.456 1.689 sum 21.037 -4.893 -9.266 23.502 Atomic orbital electron populations 1.69913 1.06292 1.26877 1.51092 1.25005 0.94677 0.99080 0.94532 0.86815 0.80476 0.83752 0.78466 1.20400 1.21413 1.18962 1.21126 0.89421 0.94450 1.50915 0.90976 1.19564 0.97040 0.91649 0.96526 1.21805 0.89125 1.00758 1.02530 1.20024 0.95599 0.88775 0.86340 0.88787 1.45162 1.16381 1.62105 1.14403 1.15951 0.82092 0.78021 0.83343 1.90902 1.57255 1.64680 1.34212 1.44702 1.18345 1.63172 1.12671 1.22300 0.85863 0.94372 0.93575 0.87047 1.24141 0.89349 0.91533 0.99471 1.88936 1.47967 1.65251 1.26635 1.23977 1.01807 0.93233 0.87124 1.23427 0.89034 0.96975 0.90280 0.90058 1.86379 1.34191 1.95488 1.20223 1.20388 0.97667 0.96391 0.93614 1.20891 0.99538 0.93575 0.98344 1.21064 0.99893 0.95840 0.97459 1.21056 1.01086 0.99479 0.93156 1.21076 1.00282 0.94145 0.98462 1.21029 0.98241 0.95769 0.97314 0.92742 0.96541 0.96935 0.91974 0.90759 0.76726 0.75576 0.87701 0.91236 0.91217 0.89050 0.76475 0.86524 0.86578 0.86635 0.86374 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.24 3.93 -27.88 -0.11 -0.35 16 10 C -0.10 -1.94 4.67 -26.73 -0.12 -2.06 16 11 C 0.20 3.26 2.17 -69.08 -0.15 3.11 16 12 H 0.09 1.72 7.44 -51.93 -0.39 1.33 16 13 N -0.73 -10.93 3.78 -59.81 -0.23 -11.15 16 14 C 0.71 11.12 8.52 -86.92 -0.74 10.38 16 15 O -0.59 -11.28 15.74 5.29 0.08 -11.20 16 16 N -0.73 -9.10 5.16 -56.72 -0.29 -9.39 16 17 C 0.15 1.64 3.36 -65.93 -0.22 1.42 16 18 H 0.11 1.35 7.72 -51.93 -0.40 0.95 16 19 C 0.03 0.40 7.41 38.21 0.28 0.68 16 20 O -0.37 -4.29 11.52 -35.23 -0.41 -4.69 16 21 C 0.02 0.12 7.51 37.73 0.28 0.41 16 22 C 0.06 0.48 4.36 -25.21 -0.11 0.37 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 24 O -0.56 -3.92 11.65 -35.23 -0.41 -4.33 16 25 C -0.08 -1.21 4.91 -104.62 -0.51 -1.72 16 26 C -0.11 -1.46 9.32 -39.59 -0.37 -1.83 16 27 C -0.12 -1.55 10.05 -39.58 -0.40 -1.94 16 28 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 29 C -0.12 -1.55 10.05 -39.58 -0.40 -1.94 16 30 C -0.10 -1.53 9.67 -39.58 -0.38 -1.91 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 33 H 0.01 0.28 7.18 -51.93 -0.37 -0.09 16 34 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.40 5.29 8.62 -40.82 -0.35 4.94 16 37 H 0.41 4.55 7.20 -40.82 -0.29 4.26 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.48 7.97 -51.93 -0.41 0.07 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.39 1.01 9.11 45.56 0.42 1.42 16 43 H 0.12 1.48 7.73 -52.49 -0.41 1.07 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 46 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.12 1.68 8.04 -52.49 -0.42 1.25 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -35.03 388.67 -9.47 -44.49 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.40 Total: 10.42 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.78 Total: -10.29 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.25 Total: -47.39 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.73 Total: -20.22 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.03 -9.47 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686607718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.610 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds