Wall clock time and date at job start Tue Mar 31 2020 23:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99859 * 2 1 4 4 H 1.48494 * 109.47237 * 270.00492 * 3 2 1 5 5 H 1.48494 * 109.47173 * 30.00419 * 3 2 1 6 6 H 1.48498 * 109.46846 * 150.00549 * 3 2 1 7 7 C 1.37874 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99984 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00136 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47265 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47245 * 54.99832 * 11 10 9 13 13 N 1.46503 * 109.46794 * 295.00033 * 11 10 9 14 14 C 1.34782 * 119.99785 * 155.00119 * 13 11 10 15 15 O 1.21586 * 119.99983 * 359.97438 * 14 13 11 16 16 N 1.34774 * 120.00026 * 180.02562 * 14 13 11 17 17 C 1.46499 * 120.00370 * 179.97438 * 16 14 13 18 18 H 1.09000 * 110.82885 * 37.18868 * 17 16 14 19 19 C 1.54996 * 110.90510 * 273.54719 * 17 16 14 20 20 O 1.44386 * 103.48741 * 204.77214 * 19 17 16 21 21 C 1.43741 * 106.97241 * 40.06302 * 20 19 17 22 22 C 1.54096 * 107.29619 * 333.48296 * 21 20 19 23 23 H 1.08995 * 110.49060 * 243.35548 * 22 21 20 24 24 O 1.42904 * 110.48948 * 120.83806 * 22 21 20 25 25 C 1.50699 * 109.47217 * 175.00342 * 11 10 9 26 26 C 1.38231 * 120.00467 * 79.72485 * 25 11 10 27 27 C 1.38228 * 119.99964 * 179.78698 * 26 25 11 28 28 C 1.38238 * 120.00148 * 0.46492 * 27 26 25 29 29 C 1.38229 * 119.99967 * 359.76526 * 28 27 26 30 30 C 1.38239 * 120.00067 * 0.02562 * 29 28 27 31 31 H 0.97001 * 120.00035 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.47345 * 59.99509 * 9 7 2 33 33 H 1.08997 * 109.46768 * 299.99330 * 9 7 2 34 34 H 1.09009 * 109.47023 * 59.99892 * 10 9 7 35 35 H 1.09005 * 109.47105 * 299.99895 * 10 9 7 36 36 H 0.97003 * 120.00520 * 334.99483 * 13 11 10 37 37 H 0.97002 * 119.99712 * 0.02562 * 16 14 13 38 38 H 1.09003 * 110.61789 * 86.27429 * 19 17 16 39 39 H 1.08998 * 110.62160 * 323.27320 * 19 17 16 40 40 H 1.09004 * 109.88176 * 92.90824 * 21 20 19 41 41 H 1.09000 * 109.87721 * 214.05550 * 21 20 19 42 42 H 0.96703 * 113.99790 * 61.45506 * 24 22 21 43 43 H 1.07998 * 119.99453 * 0.02562 * 26 25 11 44 44 H 1.08004 * 120.00175 * 180.25251 * 27 26 25 45 45 H 1.08004 * 119.99904 * 179.79377 * 28 27 26 46 46 H 1.07999 * 120.00068 * 180.02562 * 29 28 27 47 47 H 1.07995 * 120.00121 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0022 12 1 5.9156 -2.0468 0.8390 13 7 6.0388 -2.0532 -1.2547 14 6 7.2608 -1.4867 -1.3037 15 8 7.9586 -1.4593 -0.3083 16 7 7.7089 -0.9497 -2.4557 17 6 9.0369 -0.3334 -2.5089 18 1 9.7469 -0.8890 -1.8963 19 6 8.9748 1.1528 -2.0730 20 8 10.1214 1.7425 -2.7228 21 6 10.2013 1.1663 -4.0372 22 6 9.5363 -0.2222 -3.9700 23 1 10.2641 -1.0046 -4.1849 24 8 8.4397 -0.2964 -4.8832 25 6 6.0540 -4.0519 0.1216 26 6 6.0822 -4.8750 -0.9885 27 6 6.5472 -6.1719 -0.8757 28 6 6.9750 -6.6487 0.3493 29 6 6.9424 -5.8271 1.4604 30 6 6.4814 -4.5288 1.3468 31 1 -0.4850 0.8400 0.0004 32 1 3.8753 -0.6803 0.8887 33 1 3.8745 -0.6801 -0.8912 34 1 3.6579 -3.1506 -0.8908 35 1 3.6586 -3.1501 0.8893 36 1 5.4821 -2.0748 -2.0488 37 1 7.1518 -0.9705 -3.2495 38 1 9.0609 1.2390 -0.9899 39 1 8.0535 1.6176 -2.4241 40 1 9.6713 1.7968 -4.7512 41 1 11.2451 1.0634 -4.3340 42 1 8.6902 -0.1752 -5.8093 43 1 5.7445 -4.5036 -1.9447 44 1 6.5730 -6.8137 -1.7439 45 1 7.3352 -7.6630 0.4381 46 1 7.2770 -6.1994 2.4174 47 1 6.4555 -3.8870 2.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686607718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:06 Heat of formation + Delta-G solvation = -125.643426 kcal Electronic energy + Delta-G solvation = -29174.249410 eV Core-core repulsion = 25127.773280 eV Total energy + Delta-G solvation = -4046.476131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 53.47 seconds Orbital eigenvalues (eV) -41.61542 -40.68736 -39.72072 -37.29700 -37.14488 -35.36815 -35.10025 -33.18281 -32.07784 -31.70494 -30.58274 -29.46639 -28.33042 -25.19123 -24.19154 -23.49801 -22.70336 -22.35349 -21.79482 -21.33580 -19.75367 -18.92983 -18.59055 -18.01282 -17.54519 -17.07034 -16.60135 -16.52967 -16.37058 -16.17951 -15.82911 -15.56426 -15.34640 -15.22474 -14.93482 -14.56382 -14.36387 -14.23299 -14.16170 -14.04664 -13.83970 -13.46292 -13.29658 -12.94777 -12.63820 -12.58146 -12.31086 -12.16491 -11.94404 -11.86943 -11.68791 -11.61604 -11.34266 -11.32663 -11.15092 -10.87065 -10.77260 -10.34270 -9.85349 -9.75043 -9.54986 -8.30016 -6.32826 0.47723 0.56159 1.31367 1.35331 1.46349 1.59683 2.12208 2.33547 2.77553 2.94832 3.03738 3.05860 3.37726 3.44683 3.69250 3.81521 3.91452 3.99250 4.11521 4.15695 4.22878 4.26782 4.32549 4.33679 4.60889 4.63594 4.65927 4.67178 4.72590 4.75853 4.84682 4.90911 5.02596 5.15032 5.19766 5.35618 5.38913 5.45128 5.55710 5.61622 5.64720 5.65362 5.71327 5.79831 6.03005 6.17051 6.28311 6.75179 6.79243 7.09058 7.31762 7.57781 8.86604 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.006565 B = 0.004721 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4264.280427 B = 5928.980975 C = 9268.979349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.527 4.527 8 H 0.038 0.962 9 C -0.004 4.004 10 C -0.091 4.091 11 C 0.212 3.788 12 H 0.071 0.929 13 N -0.722 5.722 14 C 0.703 3.297 15 O -0.629 6.629 16 N -0.716 5.716 17 C 0.137 3.863 18 H 0.100 0.900 19 C 0.036 3.964 20 O -0.390 6.390 21 C 0.012 3.988 22 C 0.079 3.921 23 H 0.106 0.894 24 O -0.568 6.568 25 C -0.099 4.099 26 C -0.115 4.115 27 C -0.127 4.127 28 C -0.128 4.128 29 C -0.126 4.126 30 C -0.127 4.127 31 H 0.266 0.734 32 H 0.007 0.993 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.408 0.592 37 H 0.416 0.584 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.407 0.593 43 H 0.125 0.875 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.996 -6.687 -11.337 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.565 4.565 8 H 0.056 0.944 9 C -0.042 4.042 10 C -0.129 4.129 11 C 0.106 3.894 12 H 0.089 0.911 13 N -0.377 5.377 14 C 0.403 3.597 15 O -0.510 6.510 16 N -0.374 5.374 17 C 0.030 3.970 18 H 0.118 0.882 19 C -0.042 4.042 20 O -0.308 6.308 21 C -0.065 4.065 22 C 0.019 3.981 23 H 0.123 0.877 24 O -0.379 6.379 25 C -0.100 4.100 26 C -0.134 4.134 27 C -0.145 4.145 28 C -0.146 4.146 29 C -0.144 4.144 30 C -0.146 4.146 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.244 0.756 37 H 0.254 0.746 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.260 0.740 43 H 0.143 0.857 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.158 0.842 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 23.287 -6.473 -9.841 26.097 hybrid contribution -0.706 0.992 -0.871 1.497 sum 22.580 -5.482 -10.712 25.587 Atomic orbital electron populations 1.70051 1.08075 1.27996 1.52800 1.25868 0.95437 1.02946 0.94347 0.85775 0.79176 0.79136 0.79228 1.18834 1.21130 1.18255 1.21462 0.91888 0.93154 1.49953 0.94377 1.19465 0.93859 0.94511 0.96337 1.21583 0.90898 0.97851 1.02524 1.19628 0.93639 0.89882 0.86260 0.91096 1.45030 1.16440 1.61972 1.14226 1.16090 0.81891 0.78028 0.83692 1.90877 1.58235 1.66090 1.35763 1.44583 1.18900 1.62114 1.11809 1.22408 0.84878 0.93300 0.96391 0.88205 1.23965 0.89413 0.92312 0.98555 1.88909 1.47478 1.65835 1.28585 1.24251 1.03655 0.93152 0.85434 1.23279 0.89139 0.97662 0.88056 0.87665 1.86322 1.34278 1.95511 1.21765 1.20285 0.99406 0.95678 0.94680 1.21073 0.99840 0.94281 0.98178 1.21427 0.98828 0.95462 0.98733 1.21472 0.99835 1.00695 0.92579 1.21383 0.99609 0.93398 1.00004 1.21197 0.99309 0.96957 0.97125 0.92538 0.97456 0.95895 0.91240 0.91596 0.75630 0.74577 0.89670 0.91946 0.90228 0.86492 0.73969 0.85674 0.83889 0.83590 0.84166 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.26 13.96 21.45 0.30 -58.97 16 2 C 0.01 0.65 5.47 84.65 0.46 1.11 16 3 Si 0.94 45.10 27.47 68.60 1.88 46.99 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.26 -12.00 6.54 99.48 0.65 -11.35 16 7 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C 0.00 -0.20 3.93 29.85 0.12 -0.08 16 10 C -0.09 -3.41 4.67 30.59 0.14 -3.27 16 11 C 0.21 7.06 2.17 44.24 0.10 7.16 16 12 H 0.07 2.70 7.44 -2.39 -0.02 2.68 16 13 N -0.72 -21.44 3.78 -461.41 -1.75 -23.18 16 14 C 0.70 21.99 8.52 179.05 1.53 23.52 16 15 O -0.63 -24.38 15.74 -3.99 -0.06 -24.44 16 16 N -0.72 -17.12 5.16 -451.62 -2.33 -19.45 16 17 C 0.14 2.94 3.36 46.29 0.16 3.10 16 18 H 0.10 2.39 7.72 -2.39 -0.02 2.37 16 19 C 0.04 0.86 7.41 72.67 0.54 1.40 16 20 O -0.39 -8.63 11.52 -148.98 -1.72 -10.35 16 21 C 0.01 0.15 7.51 72.35 0.54 0.69 16 22 C 0.08 0.99 4.36 31.58 0.14 1.13 16 23 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 24 O -0.57 -6.28 11.65 -148.98 -1.74 -8.02 16 25 C -0.10 -3.01 4.91 -19.87 -0.10 -3.11 16 26 C -0.12 -3.04 9.32 22.27 0.21 -2.83 16 27 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 28 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 29 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 30 C -0.13 -3.70 9.67 22.27 0.22 -3.48 16 31 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 32 H 0.01 0.34 7.20 -2.39 -0.02 0.32 16 33 H 0.02 1.01 7.18 -2.39 -0.02 0.99 16 34 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.41 10.40 8.62 -92.71 -0.80 9.60 16 37 H 0.42 8.56 7.20 -92.71 -0.67 7.89 16 38 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 0.87 7.97 -2.38 -0.02 0.85 16 41 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.41 0.65 9.11 -74.05 -0.67 -0.02 16 43 H 0.13 2.96 7.73 -2.91 -0.02 2.94 16 44 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 47 H 0.12 3.36 8.04 -2.91 -0.02 3.34 16 Total: -1.00 -77.55 388.67 -1.64 -79.19 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -1.19 Total: 30.41 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.96 Total: -12.19 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -3.78 Total: -101.60 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -3.52 Total: -42.80 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -77.55 -1.64 -79.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686607718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.452 kcal (2) G-P(sol) polarization free energy of solvation -77.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 53.48 seconds