Wall clock time and date at job start Tue Mar 31 2020 20:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99742 * 2 1 4 4 H 1.48503 * 109.47092 * 269.99998 * 3 2 1 5 5 H 1.48495 * 109.47341 * 29.99849 * 3 2 1 6 6 H 1.48500 * 109.46829 * 150.00053 * 3 2 1 7 7 C 1.38812 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99352 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00002 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99628 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.50311 * 55.06544 * 11 10 9 13 13 C 1.53040 * 109.52795 * 175.14839 * 11 10 9 14 14 C 1.53038 * 109.53956 * 181.33280 * 13 11 10 15 15 C 1.53621 * 109.24206 * 298.50507 * 14 13 11 16 16 N 1.46932 * 108.54112 * 54.85946 * 15 14 13 17 17 C 1.34769 * 120.62838 * 126.36563 * 16 15 14 18 18 O 1.21700 * 119.99860 * 174.86240 * 17 16 15 19 19 C 1.46658 * 120.00452 * 355.13858 * 17 16 15 20 20 O 1.35390 * 126.11512 * 352.53266 * 19 17 16 21 21 C 1.34406 * 109.47510 * 179.84395 * 20 19 17 22 22 C 1.33895 * 108.55958 * 0.36662 * 21 20 19 23 23 C 1.35186 * 126.12291 * 172.83197 * 19 17 16 24 24 C 1.50723 * 130.57561 * 0.17095 * 23 19 17 25 25 C 1.53677 * 107.44360 * 164.16625 * 24 23 19 26 26 O 1.42897 * 109.97753 * 48.24874 * 25 24 23 27 27 C 1.43517 * 114.76926 * 287.63462 * 26 25 24 28 28 C 1.46928 * 118.73627 * 306.09255 * 16 15 14 29 29 H 0.96999 * 119.99858 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00475 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47065 * 60.00476 * 10 9 7 32 32 H 1.08999 * 109.47350 * 299.99914 * 10 9 7 33 33 H 1.09001 * 109.45911 * 301.35346 * 13 11 10 34 34 H 1.08996 * 109.46013 * 61.32138 * 13 11 10 35 35 H 1.09000 * 109.50254 * 58.58846 * 14 13 11 36 36 H 1.09001 * 109.49721 * 178.68321 * 14 13 11 37 37 H 1.08996 * 109.74300 * 295.12464 * 15 14 13 38 38 H 1.08999 * 109.66450 * 174.54907 * 15 14 13 39 39 H 1.08005 * 125.71511 * 180.10461 * 21 20 19 40 40 H 1.09000 * 109.86269 * 283.65389 * 24 23 19 41 41 H 1.09000 * 109.86271 * 44.60737 * 24 23 19 42 42 H 1.08999 * 109.38745 * 168.40124 * 25 24 23 43 43 H 1.08998 * 109.38439 * 288.09465 * 25 24 23 44 44 H 1.08998 * 109.82780 * 171.04179 * 27 26 25 45 45 H 1.08999 * 109.82251 * 291.91333 * 27 26 25 46 46 H 1.08994 * 109.58261 * 173.64652 * 28 16 15 47 47 H 1.08997 * 109.58692 * 293.92921 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0009 12 1 5.8666 -1.5455 0.8426 13 6 6.3820 -3.5106 0.1241 14 6 7.8858 -3.2286 0.1573 15 6 8.3026 -2.5491 -1.1559 16 7 7.4691 -1.3546 -1.3489 17 6 8.0346 -0.1504 -1.5644 18 8 7.3358 0.8138 -1.8155 19 6 9.4924 -0.0030 -1.5022 20 8 10.3739 -0.9498 -1.1028 21 6 11.6232 -0.4602 -1.1801 22 6 11.5594 0.8028 -1.6200 23 6 10.1961 1.1043 -1.8281 24 6 9.7323 2.4504 -2.3227 25 6 10.9007 3.4332 -2.1476 26 8 12.1013 2.8627 -2.6721 27 6 12.6578 1.8014 -1.8823 28 6 6.0075 -1.4989 -1.3086 29 1 -0.4850 0.8401 -0.0004 30 1 3.8647 -0.3621 -0.0004 31 1 3.8485 -3.0433 -0.8881 32 1 3.8492 -3.0414 0.8918 33 1 6.0871 -4.0171 1.0431 34 1 6.1506 -4.1459 -0.7309 35 1 8.1146 -2.5732 0.9976 36 1 8.4295 -4.1668 0.2685 37 1 8.1548 -3.2362 -1.9891 38 1 9.3515 -2.2579 -1.1014 39 1 12.5267 -0.9945 -0.9256 40 1 9.4589 2.3839 -3.3758 41 1 8.8751 2.7845 -1.7382 42 1 10.6779 4.3586 -2.6787 43 1 11.0358 3.6494 -1.0879 44 1 13.4707 1.3220 -2.4275 45 1 13.0300 2.1993 -0.9383 46 1 5.5418 -0.5146 -1.3547 47 1 5.6762 -2.1000 -2.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690418541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:53 Heat of formation + Delta-G solvation = -40.018372 kcal Electronic energy + Delta-G solvation = -29581.868742 eV Core-core repulsion = 25539.105592 eV Total energy + Delta-G solvation = -4042.763150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.22575 -40.05501 -38.90125 -37.77480 -35.18451 -33.94972 -33.00294 -32.38156 -31.78364 -30.36921 -29.51914 -26.70257 -26.05406 -25.67571 -23.84238 -22.95394 -22.65843 -21.22773 -20.41234 -19.99241 -19.44766 -17.84200 -17.37375 -16.85613 -16.78383 -16.49377 -15.94951 -15.69873 -15.28655 -15.07915 -14.77455 -14.56817 -14.28420 -13.98389 -13.80025 -13.60346 -13.37724 -13.10185 -13.03050 -12.90675 -12.64749 -12.50109 -12.42445 -11.91998 -11.60218 -11.37290 -11.24877 -11.11446 -10.89035 -10.72550 -10.53139 -10.37177 -10.20930 -10.08907 -10.00226 -9.77400 -9.54011 -9.03189 -8.86798 -8.62712 -7.20329 -5.73560 -3.09233 0.80406 1.89075 2.28712 2.91538 3.02695 3.41211 3.44755 3.49454 3.52708 4.08254 4.14824 4.44286 4.59400 4.64400 4.67435 4.81631 4.84780 4.88161 4.88491 4.93333 5.03709 5.09171 5.21751 5.24052 5.39707 5.46635 5.49544 5.57168 5.62074 5.63398 5.72279 5.74188 5.78708 5.84169 5.92085 5.99608 6.01259 6.02114 6.26603 6.29925 6.45072 6.52359 6.65386 6.74683 6.75068 7.25086 7.94510 8.01885 8.45419 9.24276 9.97118 10.16270 11.44709 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.003325 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.476137 B = 8419.042464 C =10212.800080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.006 3.994 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.111 4.111 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.131 4.131 15 C 0.090 3.910 16 N -0.601 5.601 17 C 0.596 3.404 18 O -0.513 6.513 19 C -0.059 4.059 20 O -0.160 6.160 21 C 0.001 3.999 22 C -0.236 4.236 23 C -0.084 4.084 24 C -0.090 4.090 25 C 0.063 3.937 26 O -0.379 6.379 27 C 0.135 3.865 28 C 0.119 3.881 29 H 0.259 0.741 30 H 0.361 0.639 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.210 0.790 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.560 -2.834 -2.524 30.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.038 3.962 11 C -0.131 4.131 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.169 4.169 15 C -0.032 4.032 16 N -0.332 5.332 17 C 0.384 3.616 18 O -0.391 6.391 19 C -0.109 4.109 20 O -0.058 6.058 21 C -0.067 4.067 22 C -0.237 4.237 23 C -0.087 4.087 24 C -0.127 4.127 25 C -0.014 4.014 26 O -0.298 6.298 27 C 0.059 3.941 28 C -0.002 4.002 29 H 0.069 0.931 30 H 0.195 0.805 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.227 0.773 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 29.900 -2.621 -2.742 30.140 hybrid contribution 0.523 0.992 0.329 1.169 sum 30.423 -1.628 -2.413 30.562 Atomic orbital electron populations 1.69706 1.05099 1.25834 1.57611 1.24656 0.95216 0.97194 1.01922 0.86592 0.79164 0.84965 0.78119 1.20804 1.21708 1.20341 1.19040 0.80593 0.94713 1.43101 0.89184 1.42773 1.04137 1.02221 1.91178 1.20613 0.87196 0.89460 0.98967 1.21760 0.97026 0.96807 0.97518 0.90780 1.21530 0.93790 0.97096 1.02670 1.21963 0.97039 1.00625 0.97260 1.22409 0.96011 0.86757 0.98044 1.48076 1.08124 1.07109 1.69932 1.16707 0.83523 0.83502 0.77895 1.90906 1.60696 1.38434 1.49021 1.21483 0.90277 0.88988 1.10176 1.84452 1.15311 1.38198 1.67823 1.23764 0.87015 0.94144 1.01753 1.21005 0.96451 0.97229 1.09037 1.20202 0.92188 0.96338 0.99966 1.20926 0.99042 0.89862 1.02885 1.22707 0.83692 0.95752 0.99223 1.87984 1.40780 1.50662 1.50340 1.21037 0.92101 0.85099 0.95904 1.21821 0.77098 1.03393 0.97878 0.93069 0.80542 0.95240 0.95091 0.91184 0.91469 0.91524 0.90685 0.91060 0.87533 0.77349 0.89104 0.88096 0.87941 0.92718 0.87640 0.91513 0.88397 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.01 13.97 55.49 0.78 -29.24 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 23.26 27.74 -169.99 -4.71 18.54 16 4 H -0.28 -7.45 7.11 56.52 0.40 -7.04 16 5 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.28 -7.04 6.52 56.52 0.37 -6.67 16 7 C -0.24 -7.09 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 N -0.76 -18.45 5.18 -59.91 -0.31 -18.76 16 10 C 0.17 3.16 5.66 -4.04 -0.02 3.14 16 11 C -0.11 -1.71 2.37 -90.50 -0.21 -1.93 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.11 -1.29 5.17 -26.69 -0.14 -1.43 16 14 C -0.13 -1.26 6.10 -26.39 -0.16 -1.42 16 15 C 0.09 0.93 6.36 -3.48 -0.02 0.91 16 16 N -0.60 -8.44 2.97 -174.05 -0.52 -8.95 16 17 C 0.60 9.32 7.66 -12.87 -0.10 9.23 16 18 O -0.51 -9.69 15.02 5.19 0.08 -9.61 16 19 C -0.06 -0.76 6.81 -37.27 -0.25 -1.02 16 20 O -0.16 -1.63 7.17 2.33 0.02 -1.61 16 21 C 0.00 0.01 12.06 29.21 0.35 0.36 16 22 C -0.24 -2.20 6.04 -105.02 -0.63 -2.83 16 23 C -0.08 -1.03 6.02 -104.59 -0.63 -1.66 16 24 C -0.09 -1.04 5.78 -27.52 -0.16 -1.20 16 25 C 0.06 0.58 6.75 37.51 0.25 0.83 16 26 O -0.38 -3.80 10.70 -35.23 -0.38 -4.17 16 27 C 0.14 1.01 7.27 36.03 0.26 1.27 16 28 C 0.12 1.90 5.50 -3.71 -0.02 1.88 16 29 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 30 H 0.36 8.84 4.75 -40.82 -0.19 8.64 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.11 1.03 3.77 -55.10 -0.21 0.83 16 39 H 0.21 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.27 7.52 -51.93 -0.39 0.88 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 1.88 6.23 -51.93 -0.32 1.55 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -35.73 369.63 -8.26 -44.00 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.05 Total: 5.26 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.74 Total: -1.02 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.05 Total: -56.95 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.28 Total: -15.40 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.71 Total: 18.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.73 -8.26 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690418541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.979 kcal (2) G-P(sol) polarization free energy of solvation -35.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds