Wall clock time and date at job start Tue Mar 31 2020 20:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99742 * 2 1 4 4 H 1.48503 * 109.47092 * 269.99998 * 3 2 1 5 5 H 1.48495 * 109.47341 * 29.99849 * 3 2 1 6 6 H 1.48500 * 109.46829 * 150.00053 * 3 2 1 7 7 C 1.38812 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99352 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00002 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99628 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.50311 * 55.06544 * 11 10 9 13 13 C 1.53040 * 109.52795 * 175.14839 * 11 10 9 14 14 C 1.53038 * 109.53956 * 181.33280 * 13 11 10 15 15 C 1.53621 * 109.24206 * 298.50507 * 14 13 11 16 16 N 1.46932 * 108.54112 * 54.85946 * 15 14 13 17 17 C 1.34769 * 120.62838 * 126.36563 * 16 15 14 18 18 O 1.21700 * 119.99860 * 174.86240 * 17 16 15 19 19 C 1.46658 * 120.00452 * 355.13858 * 17 16 15 20 20 O 1.35390 * 126.11512 * 352.53266 * 19 17 16 21 21 C 1.34406 * 109.47510 * 179.84395 * 20 19 17 22 22 C 1.33895 * 108.55958 * 0.36662 * 21 20 19 23 23 C 1.35186 * 126.12291 * 172.83197 * 19 17 16 24 24 C 1.50723 * 130.57561 * 0.17095 * 23 19 17 25 25 C 1.53677 * 107.44360 * 164.16625 * 24 23 19 26 26 O 1.42897 * 109.97753 * 48.24874 * 25 24 23 27 27 C 1.43517 * 114.76926 * 287.63462 * 26 25 24 28 28 C 1.46928 * 118.73627 * 306.09255 * 16 15 14 29 29 H 0.96999 * 119.99858 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00475 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47065 * 60.00476 * 10 9 7 32 32 H 1.08999 * 109.47350 * 299.99914 * 10 9 7 33 33 H 1.09001 * 109.45911 * 301.35346 * 13 11 10 34 34 H 1.08996 * 109.46013 * 61.32138 * 13 11 10 35 35 H 1.09000 * 109.50254 * 58.58846 * 14 13 11 36 36 H 1.09001 * 109.49721 * 178.68321 * 14 13 11 37 37 H 1.08996 * 109.74300 * 295.12464 * 15 14 13 38 38 H 1.08999 * 109.66450 * 174.54907 * 15 14 13 39 39 H 1.08005 * 125.71511 * 180.10461 * 21 20 19 40 40 H 1.09000 * 109.86269 * 283.65389 * 24 23 19 41 41 H 1.09000 * 109.86271 * 44.60737 * 24 23 19 42 42 H 1.08999 * 109.38745 * 168.40124 * 25 24 23 43 43 H 1.08998 * 109.38439 * 288.09465 * 25 24 23 44 44 H 1.08998 * 109.82780 * 171.04179 * 27 26 25 45 45 H 1.08999 * 109.82251 * 291.91333 * 27 26 25 46 46 H 1.08994 * 109.58261 * 173.64652 * 28 16 15 47 47 H 1.08997 * 109.58692 * 293.92921 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0009 12 1 5.8666 -1.5455 0.8426 13 6 6.3820 -3.5106 0.1241 14 6 7.8858 -3.2286 0.1573 15 6 8.3026 -2.5491 -1.1559 16 7 7.4691 -1.3546 -1.3489 17 6 8.0346 -0.1504 -1.5644 18 8 7.3358 0.8138 -1.8155 19 6 9.4924 -0.0030 -1.5022 20 8 10.3739 -0.9498 -1.1028 21 6 11.6232 -0.4602 -1.1801 22 6 11.5594 0.8028 -1.6200 23 6 10.1961 1.1043 -1.8281 24 6 9.7323 2.4504 -2.3227 25 6 10.9007 3.4332 -2.1476 26 8 12.1013 2.8627 -2.6721 27 6 12.6578 1.8014 -1.8823 28 6 6.0075 -1.4989 -1.3086 29 1 -0.4850 0.8401 -0.0004 30 1 3.8647 -0.3621 -0.0004 31 1 3.8485 -3.0433 -0.8881 32 1 3.8492 -3.0414 0.8918 33 1 6.0871 -4.0171 1.0431 34 1 6.1506 -4.1459 -0.7309 35 1 8.1146 -2.5732 0.9976 36 1 8.4295 -4.1668 0.2685 37 1 8.1548 -3.2362 -1.9891 38 1 9.3515 -2.2579 -1.1014 39 1 12.5267 -0.9945 -0.9256 40 1 9.4589 2.3839 -3.3758 41 1 8.8751 2.7845 -1.7382 42 1 10.6779 4.3586 -2.6787 43 1 11.0358 3.6494 -1.0879 44 1 13.4707 1.3220 -2.4275 45 1 13.0300 2.1993 -0.9383 46 1 5.5418 -0.5146 -1.3547 47 1 5.6762 -2.1000 -2.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690418541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:51 Heat of formation + Delta-G solvation = -65.224388 kcal Electronic energy + Delta-G solvation = -29582.961757 eV Core-core repulsion = 25539.105592 eV Total energy + Delta-G solvation = -4043.856165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.99683 -41.16776 -39.60558 -38.97945 -36.83555 -34.86199 -34.44099 -33.32606 -33.11811 -31.92433 -30.47049 -27.67327 -27.18754 -26.80600 -24.71738 -24.54479 -23.57096 -22.66356 -21.51518 -20.82314 -20.41199 -19.70740 -18.52251 -17.70475 -17.64507 -17.32256 -16.92552 -16.70861 -16.41698 -16.16504 -16.02651 -15.89430 -15.64243 -15.23755 -14.98003 -14.59084 -14.49811 -14.38222 -14.19454 -14.00380 -13.86606 -13.70361 -13.42134 -13.29497 -13.01320 -12.74596 -12.59317 -12.26030 -12.06690 -11.99937 -11.92978 -11.84012 -11.65063 -11.45654 -11.24158 -11.05198 -10.85374 -10.54844 -9.95842 -9.57610 -9.34205 -8.08681 -5.40593 -0.08236 1.18542 1.30634 1.34613 1.38828 1.41410 1.90652 2.01100 2.40862 2.78574 3.23450 3.31387 3.36637 3.50765 3.70701 3.80276 3.82962 3.88657 3.96488 4.03482 4.12749 4.18796 4.26503 4.32315 4.41122 4.48871 4.52568 4.66997 4.68249 4.71674 4.73278 4.76252 4.83705 4.86094 4.92843 4.98950 5.03233 5.10926 5.17237 5.23331 5.28183 5.42698 5.46715 5.71256 5.74642 6.10425 6.16535 6.21064 6.82797 7.02095 7.79404 7.95887 9.12967 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.003325 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.476137 B = 8419.042464 C =10212.800080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.056 4.056 3 Si 0.944 3.056 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.230 4.230 8 H 0.066 0.934 9 N -0.763 5.763 10 C 0.161 3.839 11 C -0.098 4.098 12 H 0.059 0.941 13 C -0.108 4.108 14 C -0.122 4.122 15 C 0.084 3.916 16 N -0.599 5.599 17 C 0.587 3.413 18 O -0.564 6.564 19 C -0.088 4.088 20 O -0.158 6.158 21 C 0.034 3.966 22 C -0.254 4.254 23 C -0.096 4.096 24 C -0.094 4.094 25 C 0.069 3.931 26 O -0.396 6.396 27 C 0.132 3.868 28 C 0.122 3.878 29 H 0.259 0.741 30 H 0.361 0.639 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.265 0.735 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.063 0.937 44 H 0.132 0.868 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.174 -4.337 -1.982 35.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.248 4.248 3 Si 0.772 3.228 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.084 0.916 9 N -0.408 5.408 10 C 0.035 3.965 11 C -0.118 4.118 12 H 0.078 0.922 13 C -0.146 4.146 14 C -0.160 4.160 15 C -0.036 4.036 16 N -0.329 5.329 17 C 0.377 3.623 18 O -0.445 6.445 19 C -0.138 4.138 20 O -0.056 6.056 21 C -0.033 4.033 22 C -0.255 4.255 23 C -0.099 4.099 24 C -0.131 4.131 25 C -0.008 4.008 26 O -0.315 6.315 27 C 0.056 3.944 28 C 0.000 4.000 29 H 0.068 0.932 30 H 0.194 0.806 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.280 0.720 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.150 0.850 45 H 0.103 0.897 46 H 0.076 0.924 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 34.576 -4.188 -2.186 34.897 hybrid contribution -0.822 1.328 0.143 1.568 sum 33.754 -2.860 -2.044 33.937 Atomic orbital electron populations 1.69847 1.06710 1.26571 1.59913 1.25344 0.95979 1.00536 1.02958 0.85581 0.78311 0.80944 0.77930 1.21050 1.21468 1.19072 1.19083 0.82591 0.93631 1.40787 0.91648 1.42872 1.02729 1.04275 1.90945 1.20838 0.89362 0.87236 0.99093 1.21616 0.94697 0.98966 0.96516 0.92210 1.21530 0.94620 0.94590 1.03814 1.21942 0.95705 1.02043 0.96300 1.22721 0.96098 0.85518 0.99224 1.48157 1.07498 1.08018 1.69254 1.17122 0.84759 0.83238 0.77202 1.90862 1.62235 1.40003 1.51434 1.20924 0.89394 0.90236 1.13288 1.84399 1.16023 1.37526 1.67659 1.24802 0.87071 0.93523 0.97947 1.21302 0.95395 0.98651 1.10173 1.20539 0.94045 0.96050 0.99261 1.20909 0.99555 0.90981 1.01655 1.22686 0.82722 0.95372 0.99977 1.87957 1.40620 1.51493 1.51420 1.21362 0.91834 0.84186 0.97019 1.21595 0.78629 1.01316 0.98476 0.93230 0.80618 0.94734 0.94662 0.90139 0.90165 0.92297 0.87023 0.89421 0.86298 0.71971 0.90405 0.90154 0.86701 0.91829 0.85018 0.89661 0.92351 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.72 13.97 21.65 0.30 -64.42 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.94 49.55 27.74 68.60 1.90 51.45 16 4 H -0.28 -14.91 7.11 99.48 0.71 -14.20 16 5 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 6 H -0.27 -13.23 6.52 99.48 0.65 -12.58 16 7 C -0.23 -13.63 10.47 84.03 0.88 -12.75 16 8 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 9 N -0.76 -37.70 5.18 -343.47 -1.78 -39.48 16 10 C 0.16 6.12 5.66 86.38 0.49 6.61 16 11 C -0.10 -2.95 2.37 -10.72 -0.03 -2.97 16 12 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.11 -2.17 5.17 30.62 0.16 -2.01 16 14 C -0.12 -1.91 6.10 30.82 0.19 -1.73 16 15 C 0.08 1.53 6.36 86.51 0.55 2.08 16 16 N -0.60 -16.62 2.97 -822.79 -2.44 -19.06 16 17 C 0.59 18.90 7.66 86.44 0.66 19.56 16 18 O -0.56 -22.80 15.02 -4.35 -0.07 -22.86 16 19 C -0.09 -2.24 6.81 23.77 0.16 -2.08 16 20 O -0.16 -2.74 7.17 -14.58 -0.10 -2.85 16 21 C 0.03 0.36 12.06 66.83 0.81 1.17 16 22 C -0.25 -3.99 6.04 -20.12 -0.12 -4.11 16 23 C -0.10 -2.29 6.02 -19.84 -0.12 -2.41 16 24 C -0.09 -2.25 5.78 30.08 0.17 -2.08 16 25 C 0.07 1.22 6.75 72.21 0.49 1.71 16 26 O -0.40 -7.19 10.70 -148.98 -1.59 -8.78 16 27 C 0.13 1.52 7.27 71.25 0.52 2.04 16 28 C 0.12 3.94 5.50 86.36 0.48 4.41 16 29 H 0.26 16.29 8.31 -92.71 -0.77 15.51 16 30 H 0.36 17.94 4.75 -92.71 -0.44 17.50 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.12 1.91 3.77 -52.56 -0.20 1.72 16 39 H 0.26 -0.35 8.06 -2.91 -0.02 -0.38 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.08 2.22 7.52 -2.39 -0.02 2.20 16 42 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 44 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 2.35 6.23 -2.39 -0.01 2.34 16 47 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -82.55 369.63 2.27 -80.28 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.30 Total: 21.27 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.75 Total: 4.44 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -3.92 Total: -122.95 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.76 Total: -34.49 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.90 Total: 51.45 kcal Total: -82.55 2.27 -80.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690418541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.058 kcal (2) G-P(sol) polarization free energy of solvation -82.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds