Wall clock time and date at job start Tue Mar 31 2020 23:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48495 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46995 * 299.99566 * 3 2 1 6 6 H 1.48498 * 109.47557 * 59.99518 * 3 2 1 7 7 C 1.38809 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99858 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47360 * 34.99817 * 10 9 7 12 12 C 1.52997 * 109.47094 * 155.00353 * 10 9 7 13 13 N 1.46501 * 109.47126 * 304.99317 * 12 10 9 14 14 C 1.34772 * 120.00238 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00189 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00003 * 180.02562 * 14 13 12 17 17 O 1.42896 * 109.47531 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00569 * 179.97438 * 17 16 14 19 19 H 1.09000 * 110.54079 * 328.84157 * 18 17 16 20 20 C 1.54807 * 110.49229 * 206.22403 * 18 17 16 21 21 C 1.54994 * 102.09494 * 220.44749 * 20 18 17 22 22 O 1.44380 * 103.49110 * 37.01885 * 21 20 18 23 23 C 1.43739 * 106.97820 * 319.94499 * 22 21 20 24 24 C 1.50702 * 109.46700 * 274.99983 * 10 9 7 25 25 C 1.38234 * 120.00209 * 319.72264 * 24 10 9 26 26 C 1.38234 * 120.00053 * 179.74327 * 25 24 10 27 27 C 1.38237 * 119.99751 * 0.56087 * 26 25 24 28 28 C 1.38230 * 120.00355 * 359.69776 * 27 26 25 29 29 C 1.38235 * 119.99881 * 0.02562 * 28 27 26 30 30 H 0.97004 * 119.99980 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99827 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46812 * 184.99849 * 12 10 9 33 33 H 1.08993 * 109.47591 * 64.99354 * 12 10 9 34 34 H 0.97003 * 119.99793 * 0.02562 * 13 12 10 35 35 H 1.09008 * 109.47577 * 59.99847 * 16 14 13 36 36 H 1.09000 * 109.47184 * 300.00020 * 16 14 13 37 37 H 1.09005 * 110.90346 * 338.64483 * 20 18 17 38 38 H 1.09000 * 110.90998 * 102.24219 * 20 18 17 39 39 H 1.08998 * 110.61564 * 278.52047 * 21 20 18 40 40 H 1.08997 * 110.62119 * 155.52521 * 21 20 18 41 41 H 1.09004 * 109.87903 * 267.08704 * 23 22 21 42 42 H 1.08997 * 110.00609 * 146.00467 * 23 22 21 43 43 H 1.07999 * 120.00000 * 0.02562 * 25 24 10 44 44 H 1.07998 * 120.00046 * 180.27441 * 26 25 24 45 45 H 1.08006 * 119.99760 * 179.71735 * 27 26 25 46 46 H 1.07999 * 120.00279 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.00095 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 2.9684 -3.5502 0.5917 12 6 1.1805 -4.7518 0.6110 13 7 0.7329 -4.3347 1.9421 14 6 -0.0566 -5.1466 2.6728 15 8 -0.3962 -6.2228 2.2285 16 6 -0.5175 -4.7172 4.0418 17 8 -1.3371 -5.7400 4.6111 18 6 -1.8288 -5.4314 5.9169 19 1 -1.1179 -4.8042 6.4549 20 6 -2.1136 -6.7302 6.7097 21 6 -3.4384 -6.3836 7.4357 22 8 -4.1594 -5.5967 6.4633 23 6 -3.2009 -4.7358 5.8261 24 6 2.4176 -4.0304 -1.4133 25 6 1.5075 -3.8284 -2.4340 26 6 1.8392 -4.1663 -3.7328 27 6 3.0768 -4.7168 -4.0091 28 6 3.9849 -4.9236 -2.9877 29 6 3.6553 -4.5805 -1.6898 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 1.7554 -5.6742 0.6936 33 1 0.3134 -4.9200 -0.0276 34 1 1.0048 -3.4741 2.2976 35 1 -1.0930 -3.7951 3.9590 36 1 0.3494 -4.5482 4.6806 37 1 -2.2493 -7.5757 6.0352 38 1 -1.3177 -6.9305 7.4270 39 1 -3.2420 -5.7981 8.3338 40 1 -3.9905 -7.2909 7.6808 41 1 -3.1646 -3.7759 6.3413 42 1 -3.4717 -4.5852 4.7811 43 1 0.5389 -3.4025 -2.2175 44 1 1.1298 -4.0044 -4.5308 45 1 3.3343 -4.9849 -5.0231 46 1 4.9519 -5.3533 -3.2036 47 1 4.3647 -4.7425 -0.8917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691782039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:01 Heat of formation + Delta-G solvation = -85.342341 kcal Electronic energy + Delta-G solvation = -28199.476519 eV Core-core repulsion = 24154.747974 eV Total energy + Delta-G solvation = -4044.728545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.02285 -39.38625 -38.75996 -37.05644 -35.84931 -33.62255 -32.10135 -31.66564 -30.43412 -29.61416 -29.29744 -28.44889 -26.55227 -23.76813 -23.05012 -22.69009 -21.94820 -21.54948 -20.29623 -19.94977 -17.61888 -17.51061 -17.14732 -16.52315 -16.38074 -16.05695 -15.69054 -15.43749 -15.10644 -14.94944 -14.57421 -14.21439 -14.09084 -13.92404 -13.36066 -13.08685 -13.05594 -12.88811 -12.80796 -12.52691 -12.44097 -12.35794 -12.07917 -11.79941 -11.69375 -11.16536 -11.02078 -11.00463 -10.87339 -10.74934 -10.48771 -10.15701 -10.15595 -9.86122 -9.67316 -9.58097 -9.13321 -8.73070 -8.42741 -8.21466 -7.18594 -5.91992 -3.23530 1.83824 1.90737 2.82682 2.88972 3.33580 3.41254 3.42378 3.65869 3.92776 4.23175 4.29006 4.45995 4.58304 4.68013 4.84991 4.88199 5.06750 5.09849 5.18676 5.21920 5.29286 5.32455 5.38963 5.39511 5.42630 5.44095 5.53106 5.58101 5.65033 5.73587 5.74794 5.83661 6.01393 6.06932 6.23054 6.38519 6.46245 6.54053 6.60422 6.72717 6.90205 6.93068 7.00223 7.25604 7.50725 7.59450 7.82903 8.24092 8.48540 9.37398 9.86994 10.23726 11.29345 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.002810 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.863742 B = 9961.637669 C =12049.578742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.006 4.006 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.198 3.802 11 H 0.066 0.934 12 C 0.123 3.877 13 N -0.711 5.711 14 C 0.512 3.488 15 O -0.532 6.532 16 C 0.040 3.960 17 O -0.347 6.347 18 C 0.054 3.946 19 H 0.079 0.921 20 C -0.152 4.152 21 C 0.047 3.953 22 O -0.373 6.373 23 C 0.022 3.978 24 C -0.082 4.082 25 C -0.083 4.083 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.130 4.130 29 C -0.120 4.120 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -10.715 9.447 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.087 3.913 11 H 0.084 0.916 12 C -0.001 4.001 13 N -0.365 5.365 14 C 0.297 3.703 15 O -0.408 6.408 16 C -0.040 4.040 17 O -0.265 6.265 18 C -0.005 4.005 19 H 0.097 0.903 20 C -0.190 4.190 21 C -0.030 4.030 22 O -0.292 6.292 23 C -0.055 4.055 24 C -0.086 4.086 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.152 4.152 28 C -0.148 4.148 29 C -0.139 4.139 30 H 0.066 0.934 31 H 0.222 0.778 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.247 0.753 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.141 0.859 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.448 -11.504 9.011 14.620 hybrid contribution 0.682 1.895 0.058 2.015 sum 1.130 -9.609 9.069 13.261 Atomic orbital electron populations 1.69663 1.05058 1.25789 1.57013 1.24722 0.95450 0.97652 1.02397 0.86159 0.78900 0.84117 0.77217 1.20529 1.21843 1.21837 1.19230 0.91051 0.83679 1.43450 0.91026 1.42475 1.05812 0.99261 1.87984 1.19480 0.95002 0.86473 0.90305 0.91628 1.21587 0.98671 0.97192 0.82677 1.45826 1.50899 1.21863 1.17926 1.20073 0.78972 0.84900 0.86365 1.90709 1.55844 1.22332 1.71952 1.22325 0.95756 0.92197 0.93689 1.88103 1.67169 1.41103 1.30118 1.23597 0.95292 0.96926 0.84693 0.90260 1.23218 0.98266 0.98290 0.99201 1.23546 0.91842 0.95792 0.91816 1.88910 1.31827 1.54732 1.53704 1.23792 0.88541 0.93310 0.99851 1.20965 0.93611 0.95849 0.98161 1.21007 1.00030 0.97107 0.92030 1.21110 0.96749 0.99890 0.96797 1.20987 0.94541 1.01152 0.98543 1.20983 0.99041 1.01506 0.93270 1.21009 0.96645 0.99851 0.96395 0.93406 0.77839 0.91434 0.91492 0.75250 0.89799 0.90164 0.88818 0.89458 0.91984 0.88534 0.91625 0.88563 0.85915 0.86834 0.87071 0.86983 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.78 13.06 55.49 0.72 -25.06 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.05 9.92 -15.06 -0.15 -6.20 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.71 -15.53 3.81 -54.55 -0.21 -15.74 16 10 C 0.20 3.53 2.64 -69.08 -0.18 3.34 16 11 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 12 C 0.12 2.02 5.21 -4.04 -0.02 2.00 16 13 N -0.71 -11.00 5.39 -60.30 -0.32 -11.33 16 14 C 0.51 8.24 7.91 -10.99 -0.09 8.15 16 15 O -0.53 -10.68 16.50 -14.35 -0.24 -10.91 16 16 C 0.04 0.50 6.28 36.01 0.23 0.72 16 17 O -0.35 -4.76 9.49 -55.14 -0.52 -5.28 16 18 C 0.05 0.54 3.50 -25.20 -0.09 0.46 16 19 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 20 C -0.15 -1.33 6.90 -24.73 -0.17 -1.50 16 21 C 0.05 0.39 7.72 38.21 0.29 0.68 16 22 O -0.37 -4.46 11.52 -35.23 -0.41 -4.87 16 23 C 0.02 0.24 7.52 37.74 0.28 0.52 16 24 C -0.08 -1.45 4.92 -104.62 -0.51 -1.97 16 25 C -0.08 -1.52 9.32 -39.58 -0.37 -1.88 16 26 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 27 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 28 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 16 29 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 9.13 7.80 -40.82 -0.32 8.81 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.41 6.16 8.14 -40.82 -0.33 5.82 16 35 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 37 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 1.15 7.97 -51.93 -0.41 0.73 16 43 H 0.12 2.39 7.73 -52.49 -0.41 1.98 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 46 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 47 H 0.11 1.57 8.04 -52.49 -0.42 1.15 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -31.82 396.77 -9.80 -41.62 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -7.33 Total: 14.78 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.45 Total: -5.28 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.19 Total: -52.12 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.17 Total: -21.07 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.82 -9.80 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691782039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.726 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds