Wall clock time and date at job start Tue Mar 31 2020 23:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48495 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46995 * 299.99566 * 3 2 1 6 6 H 1.48498 * 109.47557 * 59.99518 * 3 2 1 7 7 C 1.38809 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99858 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47360 * 34.99817 * 10 9 7 12 12 C 1.52997 * 109.47094 * 155.00353 * 10 9 7 13 13 N 1.46501 * 109.47126 * 304.99317 * 12 10 9 14 14 C 1.34772 * 120.00238 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00189 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00003 * 180.02562 * 14 13 12 17 17 O 1.42896 * 109.47531 * 179.97438 * 16 14 13 18 18 C 1.42898 * 114.00569 * 179.97438 * 17 16 14 19 19 H 1.09000 * 110.54079 * 328.84157 * 18 17 16 20 20 C 1.54807 * 110.49229 * 206.22403 * 18 17 16 21 21 C 1.54994 * 102.09494 * 220.44749 * 20 18 17 22 22 O 1.44380 * 103.49110 * 37.01885 * 21 20 18 23 23 C 1.43739 * 106.97820 * 319.94499 * 22 21 20 24 24 C 1.50702 * 109.46700 * 274.99983 * 10 9 7 25 25 C 1.38234 * 120.00209 * 319.72264 * 24 10 9 26 26 C 1.38234 * 120.00053 * 179.74327 * 25 24 10 27 27 C 1.38237 * 119.99751 * 0.56087 * 26 25 24 28 28 C 1.38230 * 120.00355 * 359.69776 * 27 26 25 29 29 C 1.38235 * 119.99881 * 0.02562 * 28 27 26 30 30 H 0.97004 * 119.99980 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99827 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46812 * 184.99849 * 12 10 9 33 33 H 1.08993 * 109.47591 * 64.99354 * 12 10 9 34 34 H 0.97003 * 119.99793 * 0.02562 * 13 12 10 35 35 H 1.09008 * 109.47577 * 59.99847 * 16 14 13 36 36 H 1.09000 * 109.47184 * 300.00020 * 16 14 13 37 37 H 1.09005 * 110.90346 * 338.64483 * 20 18 17 38 38 H 1.09000 * 110.90998 * 102.24219 * 20 18 17 39 39 H 1.08998 * 110.61564 * 278.52047 * 21 20 18 40 40 H 1.08997 * 110.62119 * 155.52521 * 21 20 18 41 41 H 1.09004 * 109.87903 * 267.08704 * 23 22 21 42 42 H 1.08997 * 110.00609 * 146.00467 * 23 22 21 43 43 H 1.07999 * 120.00000 * 0.02562 * 25 24 10 44 44 H 1.07998 * 120.00046 * 180.27441 * 26 25 24 45 45 H 1.08006 * 119.99760 * 179.71735 * 27 26 25 46 46 H 1.07999 * 120.00279 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.00095 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 2.9684 -3.5502 0.5917 12 6 1.1805 -4.7518 0.6110 13 7 0.7329 -4.3347 1.9421 14 6 -0.0566 -5.1466 2.6728 15 8 -0.3962 -6.2228 2.2285 16 6 -0.5175 -4.7172 4.0418 17 8 -1.3371 -5.7400 4.6111 18 6 -1.8288 -5.4314 5.9169 19 1 -1.1179 -4.8042 6.4549 20 6 -2.1136 -6.7302 6.7097 21 6 -3.4384 -6.3836 7.4357 22 8 -4.1594 -5.5967 6.4633 23 6 -3.2009 -4.7358 5.8261 24 6 2.4176 -4.0304 -1.4133 25 6 1.5075 -3.8284 -2.4340 26 6 1.8392 -4.1663 -3.7328 27 6 3.0768 -4.7168 -4.0091 28 6 3.9849 -4.9236 -2.9877 29 6 3.6553 -4.5805 -1.6898 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 1.7554 -5.6742 0.6936 33 1 0.3134 -4.9200 -0.0276 34 1 1.0048 -3.4741 2.2976 35 1 -1.0930 -3.7951 3.9590 36 1 0.3494 -4.5482 4.6806 37 1 -2.2493 -7.5757 6.0352 38 1 -1.3177 -6.9305 7.4270 39 1 -3.2420 -5.7981 8.3338 40 1 -3.9905 -7.2909 7.6808 41 1 -3.1646 -3.7759 6.3413 42 1 -3.4717 -4.5852 4.7811 43 1 0.5389 -3.4025 -2.2175 44 1 1.1298 -4.0044 -4.5308 45 1 3.3343 -4.9849 -5.0231 46 1 4.9519 -5.3533 -3.2036 47 1 4.3647 -4.7425 -0.8917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691782039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:38 Heat of formation + Delta-G solvation = -106.014342 kcal Electronic energy + Delta-G solvation = -28200.372924 eV Core-core repulsion = 24154.747974 eV Total energy + Delta-G solvation = -4045.624950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.59 seconds Orbital eigenvalues (eV) -41.05995 -40.48686 -39.99843 -38.04435 -37.30131 -35.22331 -33.69798 -32.47081 -31.69853 -31.18227 -30.26377 -29.49204 -27.82227 -25.54992 -24.15995 -23.65714 -23.20764 -22.32121 -21.61450 -21.27861 -19.33515 -18.45025 -18.31324 -17.68418 -17.47214 -17.06679 -16.88441 -16.67746 -16.36391 -16.01549 -15.80696 -15.67112 -15.34631 -15.23516 -14.87123 -14.47639 -14.18321 -14.06149 -13.93118 -13.74231 -13.53882 -13.41171 -13.15993 -12.92618 -12.84244 -12.70181 -12.41484 -12.38695 -12.14786 -11.98460 -11.82655 -11.71766 -11.62726 -11.05988 -10.97858 -10.86538 -10.49275 -10.08542 -9.67546 -9.52525 -9.02984 -7.91539 -5.20994 0.58703 0.65075 1.48271 1.51670 1.56706 1.58915 1.81762 2.56876 2.86239 2.99223 3.04217 3.42955 3.49182 3.73725 3.81757 3.86335 4.02272 4.05696 4.16191 4.17211 4.21430 4.22987 4.27573 4.35153 4.37355 4.38487 4.41862 4.54771 4.70871 4.73350 4.79746 4.80236 4.84141 4.90245 5.03697 5.04920 5.22725 5.30986 5.42383 5.56871 5.69679 5.73677 5.80540 5.94029 6.06492 6.25814 6.29207 6.56884 7.21403 7.36937 8.04014 8.30894 9.30604 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010150 B = 0.002810 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.863742 B = 9961.637669 C =12049.578742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.063 4.063 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.304 1.304 6 H -0.293 1.293 7 C -0.227 4.227 8 H 0.075 0.925 9 N -0.718 5.718 10 C 0.206 3.794 11 H 0.075 0.925 12 C 0.133 3.867 13 N -0.705 5.705 14 C 0.508 3.492 15 O -0.578 6.578 16 C 0.045 3.955 17 O -0.378 6.378 18 C 0.048 3.952 19 H 0.111 0.889 20 C -0.150 4.150 21 C 0.044 3.956 22 O -0.404 6.404 23 C 0.019 3.981 24 C -0.103 4.103 25 C -0.111 4.111 26 C -0.138 4.138 27 C -0.131 4.131 28 C -0.126 4.126 29 C -0.126 4.126 30 H 0.249 0.751 31 H 0.375 0.625 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.415 0.585 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -11.148 10.344 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.255 4.255 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.232 1.232 6 H -0.220 1.220 7 C -0.359 4.359 8 H 0.093 0.907 9 N -0.358 5.358 10 C 0.096 3.904 11 H 0.093 0.907 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.295 3.705 15 O -0.458 6.458 16 C -0.034 4.034 17 O -0.297 6.297 18 C -0.009 4.009 19 H 0.129 0.871 20 C -0.188 4.188 21 C -0.032 4.032 22 O -0.324 6.324 23 C -0.058 4.058 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.156 4.156 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.144 4.144 30 H 0.058 0.942 31 H 0.208 0.792 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.253 0.747 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.144 0.856 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.041 -11.954 9.922 15.830 hybrid contribution -0.072 1.899 -0.277 1.921 sum 2.969 -10.055 9.645 14.245 Atomic orbital electron populations 1.69801 1.06327 1.25703 1.59487 1.25337 0.96052 1.00327 1.03824 0.85262 0.78409 0.80878 0.76291 1.19287 1.23198 1.22020 1.19489 0.91220 0.84594 1.40603 0.90709 1.42506 1.05273 1.00036 1.87986 1.19541 0.94857 0.85006 0.90981 0.90700 1.21414 0.97717 0.97183 0.82848 1.45791 1.50675 1.21905 1.17454 1.20805 0.78001 0.84084 0.87616 1.90681 1.57495 1.24352 1.73270 1.22365 0.97194 0.92016 0.91813 1.88072 1.67632 1.41937 1.32052 1.23870 0.95397 0.98118 0.83560 0.87103 1.23254 0.99462 0.96865 0.99194 1.23781 0.91375 0.96271 0.91762 1.88869 1.33227 1.55472 1.54810 1.23839 0.88815 0.94263 0.98888 1.20896 0.94753 0.97569 0.97373 1.20955 0.99413 0.98940 0.93640 1.21342 0.98094 0.99950 0.96194 1.21390 0.93541 0.99666 1.00332 1.21419 1.00322 1.00198 0.92476 1.21294 0.95941 0.99254 0.97947 0.94232 0.79236 0.90374 0.93606 0.74750 0.88524 0.86539 0.91048 0.86741 0.89580 0.87482 0.89599 0.90880 0.88682 0.85552 0.83874 0.83524 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.80 13.06 21.65 0.28 -54.52 16 2 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 3 Si 0.96 43.55 29.55 68.60 2.03 45.58 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.23 -11.29 9.92 84.03 0.83 -10.46 16 8 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.72 -31.74 3.81 -326.51 -1.24 -32.98 16 10 C 0.21 7.29 2.64 44.25 0.12 7.41 16 11 H 0.08 2.52 7.94 -2.39 -0.02 2.50 16 12 C 0.13 4.45 5.21 86.38 0.45 4.90 16 13 N -0.71 -21.89 5.39 -463.07 -2.49 -24.38 16 14 C 0.51 16.45 7.91 87.66 0.69 17.14 16 15 O -0.58 -23.89 16.50 16.01 0.26 -23.63 16 16 C 0.05 1.07 6.28 71.24 0.45 1.52 16 17 O -0.38 -10.20 9.49 -129.94 -1.23 -11.44 16 18 C 0.05 0.91 3.50 31.59 0.11 1.02 16 19 H 0.11 1.36 7.86 -2.39 -0.02 1.34 16 20 C -0.15 -2.41 6.90 31.89 0.22 -2.19 16 21 C 0.04 0.66 7.72 72.66 0.56 1.22 16 22 O -0.40 -9.54 11.52 -148.98 -1.72 -11.25 16 23 C 0.02 0.40 7.52 72.36 0.54 0.94 16 24 C -0.10 -3.59 4.92 -19.86 -0.10 -3.69 16 25 C -0.11 -4.12 9.32 22.27 0.21 -3.91 16 26 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 27 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 28 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 29 C -0.13 -3.68 9.67 22.27 0.22 -3.46 16 30 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 31 H 0.37 18.38 7.80 -92.71 -0.72 17.66 16 32 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.42 12.28 8.14 -92.71 -0.75 11.52 16 35 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.12 1.90 8.11 -2.39 -0.02 1.88 16 37 H 0.07 1.46 8.09 -2.38 -0.02 1.44 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.82 7.97 -2.39 -0.02 1.80 16 43 H 0.09 3.97 7.73 -2.91 -0.02 3.94 16 44 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 45 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 46 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 47 H 0.14 3.31 8.04 -2.91 -0.02 3.28 16 Total: -1.00 -71.03 396.77 0.83 -70.20 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.50 Total: 45.19 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.44 Total: -2.77 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.46 Total: -111.88 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.69 Total: -46.32 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.03 0.83 -70.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691782039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.816 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.59 seconds