Wall clock time and date at job start Tue Mar 31 2020 23:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00389 * 2 1 4 4 H 1.48502 * 109.47427 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47014 * 299.99592 * 3 2 1 6 6 H 1.48502 * 109.47181 * 59.99411 * 3 2 1 7 7 C 1.38816 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99925 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99898 * 185.09860 * 9 7 2 11 11 H 1.08993 * 109.47039 * 182.86869 * 10 9 7 12 12 C 1.53004 * 109.47224 * 302.87254 * 10 9 7 13 13 N 1.46497 * 109.46683 * 305.00101 * 12 10 9 14 14 C 1.34775 * 119.99936 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00333 * 179.97438 * 14 13 12 17 17 O 1.42898 * 109.47137 * 179.97438 * 16 14 13 18 18 C 1.42906 * 113.99934 * 179.97438 * 17 16 14 19 19 H 1.09000 * 111.01886 * 25.78123 * 18 17 16 20 20 C 1.55299 * 111.12389 * 149.99835 * 18 17 16 21 21 C 1.54382 * 102.43524 * 152.15662 * 20 18 17 22 22 O 1.43229 * 107.59083 * 338.54497 * 21 20 18 23 23 C 1.43652 * 109.97180 * 358.28713 * 22 21 20 24 24 C 1.50704 * 109.47072 * 62.87096 * 10 9 7 25 25 C 1.38244 * 119.99654 * 213.21062 * 24 10 9 26 26 C 1.38243 * 119.99405 * 179.74581 * 25 24 10 27 27 C 1.38239 * 119.99911 * 0.54691 * 26 25 24 28 28 C 1.38234 * 120.00136 * 359.70658 * 27 26 25 29 29 C 1.38234 * 120.00072 * 33.48341 * 24 10 9 30 30 H 0.97004 * 119.99406 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00043 * 5.09690 * 9 7 2 32 32 H 1.08994 * 109.47190 * 185.00325 * 12 10 9 33 33 H 1.09001 * 109.46699 * 64.99640 * 12 10 9 34 34 H 0.97004 * 120.00264 * 359.97438 * 13 12 10 35 35 H 1.09002 * 109.47042 * 59.99794 * 16 14 13 36 36 H 1.09003 * 109.46798 * 300.00154 * 16 14 13 37 37 H 1.09001 * 110.84772 * 33.86717 * 20 18 17 38 38 H 1.09000 * 110.85483 * 270.44893 * 20 18 17 39 39 H 1.08998 * 109.83151 * 98.06046 * 21 20 18 40 40 H 1.09001 * 109.83320 * 219.02579 * 21 20 18 41 41 H 1.08991 * 110.31105 * 143.34523 * 23 22 21 42 42 H 1.08999 * 110.30771 * 265.41889 * 23 22 21 43 43 H 1.07998 * 120.00134 * 359.97438 * 25 24 10 44 44 H 1.07998 * 119.99461 * 180.27169 * 26 25 24 45 45 H 1.07999 * 119.99250 * 179.72607 * 27 26 25 46 46 H 1.08001 * 119.99882 * 180.02562 * 28 27 26 47 47 H 1.07998 * 119.99802 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0535 -3.6543 0.1139 11 1 1.3510 -4.4848 0.0449 12 6 3.0774 -3.7571 -1.0184 13 7 2.4002 -3.5858 -2.3061 14 6 3.1079 -3.6378 -3.4519 15 8 4.3055 -3.8260 -3.4169 16 6 2.4112 -3.4623 -4.7766 17 8 3.3677 -3.5569 -5.8341 18 6 2.8075 -3.4040 -7.1399 19 1 1.8908 -2.8154 -7.1056 20 6 3.8370 -2.7799 -8.1209 21 6 3.3820 -3.3446 -9.4838 22 8 2.6088 -4.5228 -9.2279 23 6 2.5638 -4.7830 -7.8158 24 6 2.7653 -3.7075 1.4411 25 6 3.9801 -4.3586 1.5483 26 6 4.6355 -4.4028 2.7647 27 6 4.0709 -3.8056 3.8762 28 6 2.8537 -3.1590 3.7701 29 6 2.2009 -3.1099 2.5525 30 1 -0.4849 0.8401 -0.0004 31 1 0.3584 -2.3897 -0.0745 32 1 3.5566 -4.7355 -0.9873 33 1 3.8313 -2.9791 -0.8981 34 1 1.4423 -3.4349 -2.3341 35 1 1.9311 -2.4841 -4.8078 36 1 1.6578 -4.2408 -4.8969 37 1 4.8485 -3.1090 -7.8829 38 1 3.7724 -1.6919 -8.1108 39 1 2.7709 -2.6072 -10.0042 40 1 4.2528 -3.5978 -10.0885 41 1 1.5864 -5.1744 -7.5342 42 1 3.3476 -5.4868 -7.5357 43 1 4.4187 -4.8296 0.6811 44 1 5.5866 -4.9078 2.8475 45 1 4.5809 -3.8440 4.8274 46 1 2.4127 -2.6921 4.6384 47 1 1.2500 -2.6047 2.4696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691782040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:06 Heat of formation + Delta-G solvation = -80.721108 kcal Electronic energy + Delta-G solvation = -28462.173520 eV Core-core repulsion = 24417.645367 eV Total energy + Delta-G solvation = -4044.528153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -39.96018 -39.37873 -38.74212 -37.09038 -35.84751 -33.51422 -32.05670 -31.69531 -30.46309 -29.56473 -29.32861 -28.30101 -26.38763 -24.31444 -22.75501 -22.42845 -21.78357 -21.74608 -20.20934 -19.83282 -17.64590 -17.44909 -17.30885 -16.51782 -16.28623 -15.93951 -15.64798 -15.26901 -15.05522 -14.69600 -14.55793 -14.25704 -14.11474 -13.84324 -13.55213 -13.48421 -13.05011 -12.82728 -12.68089 -12.50758 -12.48760 -12.14976 -12.01220 -11.81099 -11.65027 -11.30157 -11.00248 -10.97548 -10.84340 -10.60595 -10.43404 -10.06920 -9.94340 -9.79875 -9.68762 -9.48631 -9.10583 -8.55434 -8.37217 -8.13761 -7.18642 -5.91412 -3.22864 1.88155 1.97191 2.84204 2.95622 3.35327 3.43794 3.46213 3.61286 4.04155 4.16467 4.32559 4.50139 4.56484 4.64293 4.84786 4.93322 5.03701 5.10769 5.23446 5.26206 5.35095 5.38395 5.42383 5.43739 5.45143 5.51713 5.59355 5.63649 5.64754 5.72254 5.79155 5.91096 5.99754 6.18323 6.28652 6.51287 6.58986 6.60917 6.62866 6.82052 6.92100 6.99814 7.07726 7.29607 7.56794 7.66314 7.93404 8.25110 8.59444 9.39028 9.85824 10.23037 11.29918 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002850 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.075584 B = 9823.068428 C =11401.595352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.005 4.005 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.714 5.714 10 C 0.197 3.803 11 H 0.074 0.926 12 C 0.117 3.883 13 N -0.700 5.700 14 C 0.512 3.488 15 O -0.535 6.535 16 C 0.042 3.958 17 O -0.343 6.343 18 C 0.052 3.948 19 H 0.085 0.915 20 C -0.156 4.156 21 C 0.053 3.947 22 O -0.381 6.381 23 C 0.031 3.969 24 C -0.079 4.079 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.134 4.134 28 C -0.131 4.131 29 C -0.073 4.073 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.404 0.596 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -9.332 -8.176 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.086 3.914 11 H 0.092 0.908 12 C -0.009 4.009 13 N -0.352 5.352 14 C 0.296 3.704 15 O -0.412 6.412 16 C -0.038 4.038 17 O -0.261 6.261 18 C -0.007 4.007 19 H 0.103 0.897 20 C -0.193 4.193 21 C -0.024 4.024 22 O -0.301 6.301 23 C -0.046 4.046 24 C -0.082 4.082 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.152 4.152 28 C -0.149 4.149 29 C -0.092 4.092 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.239 0.761 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.396 -9.455 -8.268 13.011 hybrid contribution -0.374 1.497 0.260 1.564 sum 3.022 -7.958 -8.008 11.687 Atomic orbital electron populations 1.69653 1.04963 1.25672 1.57518 1.24675 0.95381 0.97513 1.02512 0.86241 0.79202 0.84391 0.77182 1.20489 1.21918 1.21805 1.19113 0.91019 0.83514 1.42578 0.91179 1.42412 1.06155 0.99721 1.87110 1.19359 0.92455 0.90562 0.89057 0.90843 1.21848 0.96274 1.00337 0.82433 1.45592 1.12248 1.72156 1.05193 1.19996 0.87662 0.77654 0.85085 1.90697 1.14538 1.48550 1.87416 1.22358 0.91833 1.02715 0.86929 1.88046 1.32502 1.93158 1.12362 1.23937 0.97066 0.95866 0.83802 0.89714 1.23173 1.00855 1.01934 0.93382 1.23086 0.95526 0.87323 0.96442 1.88419 1.73343 1.45208 1.23080 1.23933 1.02650 0.97270 0.80763 1.20666 0.94728 0.96135 0.96650 1.21133 0.95497 1.00505 0.97405 1.20977 0.99630 1.01085 0.93312 1.20993 0.96365 0.99760 0.98109 1.21125 0.95792 1.00089 0.97869 1.21076 1.00591 0.96261 0.91229 0.93530 0.77875 0.92441 0.91180 0.76094 0.89726 0.90359 0.89115 0.89240 0.90930 0.90977 0.89386 0.90899 0.86452 0.87050 0.87192 0.86915 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.39 13.06 55.49 0.72 -24.66 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -5.68 8.54 -15.06 -0.13 -5.81 16 8 H 0.07 1.82 7.00 -52.49 -0.37 1.45 16 9 N -0.71 -14.86 3.84 -54.55 -0.21 -15.07 16 10 C 0.20 3.39 3.26 -69.08 -0.22 3.16 16 11 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 12 C 0.12 2.00 3.91 -4.04 -0.02 1.99 16 13 N -0.70 -11.18 5.39 -60.30 -0.32 -11.51 16 14 C 0.51 8.58 7.91 -10.99 -0.09 8.50 16 15 O -0.54 -11.17 16.50 -14.36 -0.24 -11.40 16 16 C 0.04 0.53 6.25 36.01 0.23 0.76 16 17 O -0.34 -4.79 9.71 -55.14 -0.54 -5.33 16 18 C 0.05 0.55 3.63 -24.19 -0.09 0.47 16 19 H 0.08 0.77 7.83 -51.93 -0.41 0.36 16 20 C -0.16 -1.47 6.74 -24.79 -0.17 -1.63 16 21 C 0.05 0.46 7.80 37.88 0.30 0.75 16 22 O -0.38 -4.25 11.36 -35.23 -0.40 -4.65 16 23 C 0.03 0.31 7.55 38.48 0.29 0.60 16 24 C -0.08 -1.39 5.16 -104.62 -0.54 -1.93 16 25 C -0.13 -2.03 9.14 -39.58 -0.36 -2.40 16 26 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 27 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 28 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 29 C -0.07 -1.34 8.95 -39.58 -0.35 -1.69 16 30 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.39 8.52 8.04 -40.82 -0.33 8.19 16 32 H 0.06 0.92 6.86 -51.93 -0.36 0.56 16 33 H 0.07 1.43 7.22 -51.93 -0.37 1.06 16 34 H 0.40 5.90 8.14 -40.82 -0.33 5.57 16 35 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.12 1.73 6.22 -52.49 -0.33 1.40 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.13 2.62 7.51 -52.49 -0.39 2.22 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -31.18 389.75 -9.67 -40.85 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.09 Total: 14.01 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.45 Total: -4.73 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.19 Total: -51.25 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.17 Total: -21.38 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.18 -9.67 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691782040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.870 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds