Wall clock time and date at job start Tue Mar 31 2020 23:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00389 * 2 1 4 4 H 1.48502 * 109.47427 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47014 * 299.99592 * 3 2 1 6 6 H 1.48502 * 109.47181 * 59.99411 * 3 2 1 7 7 C 1.38816 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99925 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99898 * 185.09860 * 9 7 2 11 11 H 1.08993 * 109.47039 * 182.86869 * 10 9 7 12 12 C 1.53004 * 109.47224 * 302.87254 * 10 9 7 13 13 N 1.46497 * 109.46683 * 305.00101 * 12 10 9 14 14 C 1.34775 * 119.99936 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00333 * 179.97438 * 14 13 12 17 17 O 1.42898 * 109.47137 * 179.97438 * 16 14 13 18 18 C 1.42906 * 113.99934 * 179.97438 * 17 16 14 19 19 H 1.09000 * 111.01886 * 25.78123 * 18 17 16 20 20 C 1.55299 * 111.12389 * 149.99835 * 18 17 16 21 21 C 1.54382 * 102.43524 * 152.15662 * 20 18 17 22 22 O 1.43229 * 107.59083 * 338.54497 * 21 20 18 23 23 C 1.43652 * 109.97180 * 358.28713 * 22 21 20 24 24 C 1.50704 * 109.47072 * 62.87096 * 10 9 7 25 25 C 1.38244 * 119.99654 * 213.21062 * 24 10 9 26 26 C 1.38243 * 119.99405 * 179.74581 * 25 24 10 27 27 C 1.38239 * 119.99911 * 0.54691 * 26 25 24 28 28 C 1.38234 * 120.00136 * 359.70658 * 27 26 25 29 29 C 1.38234 * 120.00072 * 33.48341 * 24 10 9 30 30 H 0.97004 * 119.99406 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00043 * 5.09690 * 9 7 2 32 32 H 1.08994 * 109.47190 * 185.00325 * 12 10 9 33 33 H 1.09001 * 109.46699 * 64.99640 * 12 10 9 34 34 H 0.97004 * 120.00264 * 359.97438 * 13 12 10 35 35 H 1.09002 * 109.47042 * 59.99794 * 16 14 13 36 36 H 1.09003 * 109.46798 * 300.00154 * 16 14 13 37 37 H 1.09001 * 110.84772 * 33.86717 * 20 18 17 38 38 H 1.09000 * 110.85483 * 270.44893 * 20 18 17 39 39 H 1.08998 * 109.83151 * 98.06046 * 21 20 18 40 40 H 1.09001 * 109.83320 * 219.02579 * 21 20 18 41 41 H 1.08991 * 110.31105 * 143.34523 * 23 22 21 42 42 H 1.08999 * 110.30771 * 265.41889 * 23 22 21 43 43 H 1.07998 * 120.00134 * 359.97438 * 25 24 10 44 44 H 1.07998 * 119.99461 * 180.27169 * 26 25 24 45 45 H 1.07999 * 119.99250 * 179.72607 * 27 26 25 46 46 H 1.08001 * 119.99882 * 180.02562 * 28 27 26 47 47 H 1.07998 * 119.99802 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0535 -3.6543 0.1139 11 1 1.3510 -4.4848 0.0449 12 6 3.0774 -3.7571 -1.0184 13 7 2.4002 -3.5858 -2.3061 14 6 3.1079 -3.6378 -3.4519 15 8 4.3055 -3.8260 -3.4169 16 6 2.4112 -3.4623 -4.7766 17 8 3.3677 -3.5569 -5.8341 18 6 2.8075 -3.4040 -7.1399 19 1 1.8908 -2.8154 -7.1056 20 6 3.8370 -2.7799 -8.1209 21 6 3.3820 -3.3446 -9.4838 22 8 2.6088 -4.5228 -9.2279 23 6 2.5638 -4.7830 -7.8158 24 6 2.7653 -3.7075 1.4411 25 6 3.9801 -4.3586 1.5483 26 6 4.6355 -4.4028 2.7647 27 6 4.0709 -3.8056 3.8762 28 6 2.8537 -3.1590 3.7701 29 6 2.2009 -3.1099 2.5525 30 1 -0.4849 0.8401 -0.0004 31 1 0.3584 -2.3897 -0.0745 32 1 3.5566 -4.7355 -0.9873 33 1 3.8313 -2.9791 -0.8981 34 1 1.4423 -3.4349 -2.3341 35 1 1.9311 -2.4841 -4.8078 36 1 1.6578 -4.2408 -4.8969 37 1 4.8485 -3.1090 -7.8829 38 1 3.7724 -1.6919 -8.1108 39 1 2.7709 -2.6072 -10.0042 40 1 4.2528 -3.5978 -10.0885 41 1 1.5864 -5.1744 -7.5342 42 1 3.3476 -5.4868 -7.5357 43 1 4.4187 -4.8296 0.6811 44 1 5.5866 -4.9078 2.8475 45 1 4.5809 -3.8440 4.8274 46 1 2.4127 -2.6921 4.6384 47 1 1.2500 -2.6047 2.4696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691782040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:05 Heat of formation + Delta-G solvation = -100.932926 kcal Electronic energy + Delta-G solvation = -28463.049970 eV Core-core repulsion = 24417.645367 eV Total energy + Delta-G solvation = -4045.404603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.01943 -40.50026 -39.99388 -38.10135 -37.31851 -35.12089 -33.66609 -32.52581 -31.80023 -31.07329 -30.24960 -29.40393 -27.70780 -26.04436 -23.90515 -23.44698 -23.02245 -22.57095 -21.56210 -21.21843 -19.32085 -18.46764 -18.41706 -17.73870 -17.32945 -17.08178 -16.80475 -16.69456 -16.13777 -15.90465 -15.85644 -15.64346 -15.46656 -15.12651 -14.88834 -14.59968 -14.40155 -14.11316 -13.93090 -13.60184 -13.50248 -13.43300 -13.27506 -13.03900 -12.89210 -12.61610 -12.53070 -12.49625 -12.08589 -11.91183 -11.81219 -11.75762 -11.51861 -11.01415 -10.83916 -10.76171 -10.50308 -9.95350 -9.64726 -9.47695 -8.99761 -7.92694 -5.19541 0.61381 0.69028 1.40968 1.46378 1.51772 1.62143 1.82446 2.54795 2.73024 3.04256 3.12002 3.40648 3.41276 3.76661 3.83488 3.88157 3.93768 4.04891 4.14715 4.17697 4.21854 4.26581 4.28009 4.30666 4.35638 4.41948 4.51722 4.65056 4.69312 4.71945 4.80753 4.86289 4.91135 4.93570 5.01001 5.12513 5.26729 5.33489 5.50789 5.59449 5.72945 5.77931 5.85230 5.96590 6.04793 6.27780 6.31744 6.65264 7.29642 7.39815 8.04299 8.33600 9.28987 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002850 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.075584 B = 9823.068428 C =11401.595352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.054 4.054 3 Si 0.940 3.060 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.203 4.203 8 H 0.055 0.945 9 N -0.713 5.713 10 C 0.201 3.799 11 H 0.099 0.901 12 C 0.127 3.873 13 N -0.695 5.695 14 C 0.506 3.494 15 O -0.582 6.582 16 C 0.047 3.953 17 O -0.372 6.372 18 C 0.047 3.953 19 H 0.104 0.896 20 C -0.156 4.156 21 C 0.051 3.949 22 O -0.399 6.399 23 C 0.032 3.968 24 C -0.096 4.096 25 C -0.133 4.133 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.139 4.139 29 C -0.098 4.098 30 H 0.249 0.751 31 H 0.382 0.618 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.412 0.588 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.129 0.871 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.127 0.873 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -10.315 -8.360 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.247 4.247 3 Si 0.772 3.228 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.335 4.335 8 H 0.073 0.927 9 N -0.352 5.352 10 C 0.091 3.909 11 H 0.117 0.883 12 C 0.001 3.999 13 N -0.347 5.347 14 C 0.292 3.708 15 O -0.462 6.462 16 C -0.033 4.033 17 O -0.290 6.290 18 C -0.011 4.011 19 H 0.122 0.878 20 C -0.194 4.194 21 C -0.024 4.024 22 O -0.319 6.319 23 C -0.045 4.045 24 C -0.099 4.099 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.149 4.149 28 C -0.157 4.157 29 C -0.116 4.116 30 H 0.058 0.942 31 H 0.216 0.784 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.249 0.751 35 H 0.117 0.883 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.146 0.854 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.145 0.855 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.724 -10.462 -8.454 13.957 hybrid contribution -0.377 1.699 0.358 1.776 sum 3.347 -8.764 -8.096 12.391 Atomic orbital electron populations 1.69733 1.05573 1.25416 1.59861 1.25082 0.95913 0.99338 1.04354 0.85577 0.78113 0.82495 0.76620 1.20839 1.22216 1.22419 1.19060 0.90296 0.84706 1.39472 0.92661 1.42372 1.05886 1.00065 1.86900 1.19505 0.92736 0.89534 0.89085 0.88301 1.21652 0.95462 0.99855 0.82947 1.45579 1.12590 1.71642 1.04849 1.20762 0.87240 0.76303 0.86471 1.90670 1.16653 1.50746 1.88180 1.22392 0.91583 1.04743 0.84534 1.88012 1.33830 1.93478 1.13695 1.24135 0.97991 0.96503 0.82444 0.87819 1.23201 0.99942 1.02656 0.93603 1.23227 0.96056 0.87008 0.96151 1.88396 1.73778 1.46231 1.23472 1.23940 1.03182 0.96911 0.80437 1.20652 0.95710 0.97292 0.96261 1.21311 0.94912 1.00365 0.98594 1.21378 1.00496 1.00324 0.92644 1.21365 0.95620 0.98398 0.99553 1.21357 0.96462 1.00268 0.97573 1.20983 1.00283 0.97663 0.92711 0.94220 0.78436 0.90897 0.94694 0.75112 0.88329 0.86711 0.90478 0.88075 0.89163 0.90112 0.87720 0.92088 0.85361 0.84052 0.84043 0.85518 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.71 13.06 21.65 0.28 -52.43 16 2 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 3 Si 0.94 44.97 29.55 68.60 2.03 46.99 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 7 C -0.20 -10.06 8.54 84.03 0.72 -9.34 16 8 H 0.06 2.91 7.00 -2.91 -0.02 2.89 16 9 N -0.71 -29.75 3.84 -326.49 -1.25 -31.01 16 10 C 0.20 6.80 3.26 44.25 0.14 6.95 16 11 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 12 C 0.13 4.30 3.91 86.38 0.34 4.63 16 13 N -0.69 -21.62 5.39 -463.06 -2.49 -24.12 16 14 C 0.51 16.63 7.91 87.66 0.69 17.32 16 15 O -0.58 -24.46 16.50 16.00 0.26 -24.20 16 16 C 0.05 1.11 6.25 71.24 0.45 1.55 16 17 O -0.37 -10.00 9.71 -129.94 -1.26 -11.26 16 18 C 0.05 0.93 3.63 32.24 0.12 1.04 16 19 H 0.10 1.61 7.83 -2.39 -0.02 1.59 16 20 C -0.16 -2.76 6.74 31.85 0.21 -2.55 16 21 C 0.05 0.81 7.80 72.45 0.56 1.38 16 22 O -0.40 -8.30 11.36 -148.98 -1.69 -9.99 16 23 C 0.03 0.61 7.55 72.84 0.55 1.16 16 24 C -0.10 -3.34 5.16 -19.86 -0.10 -3.44 16 25 C -0.13 -4.07 9.14 22.27 0.20 -3.86 16 26 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 27 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 28 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 29 C -0.10 -3.58 8.95 22.27 0.20 -3.38 16 30 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.38 16.88 8.04 -92.71 -0.75 16.14 16 32 H 0.07 2.26 6.86 -2.39 -0.02 2.24 16 33 H 0.03 1.44 7.22 -2.39 -0.02 1.42 16 34 H 0.41 11.50 8.14 -92.71 -0.75 10.75 16 35 H 0.10 2.08 8.12 -2.39 -0.02 2.06 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.13 3.56 6.22 -2.91 -0.02 3.54 16 44 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 45 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 46 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 47 H 0.10 4.32 7.51 -2.91 -0.02 4.30 16 Total: -1.00 -68.29 389.75 0.59 -67.70 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -0.51 Total: 39.98 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 5.22 Total: -1.67 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -3.47 Total: -107.56 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -2.69 Total: -45.45 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -68.29 0.59 -67.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691782040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.231 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds