Wall clock time and date at job start Tue Mar 31 2020 23:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47339 * 270.00513 * 3 2 1 5 5 H 1.48500 * 109.46889 * 30.00801 * 3 2 1 6 6 H 1.48502 * 109.46927 * 150.00024 * 3 2 1 7 7 C 1.38811 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00293 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00152 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00117 * 185.04835 * 9 7 2 11 11 H 1.09003 * 109.47054 * 174.93579 * 10 9 7 12 12 C 1.52997 * 109.47024 * 54.93885 * 10 9 7 13 13 N 1.46495 * 109.47306 * 54.99822 * 12 10 9 14 14 C 1.34774 * 120.00095 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99889 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99905 * 180.02562 * 14 13 12 17 17 O 1.42910 * 109.47028 * 180.02562 * 16 14 13 18 18 C 1.42896 * 113.99841 * 180.02562 * 17 16 14 19 19 H 1.08999 * 111.02613 * 25.77803 * 18 17 16 20 20 C 1.55308 * 111.12408 * 150.00525 * 18 17 16 21 21 C 1.54379 * 102.43728 * 152.15307 * 20 18 17 22 22 O 1.43236 * 107.59183 * 338.53833 * 21 20 18 23 23 C 1.43652 * 109.96803 * 358.29091 * 22 21 20 24 24 C 1.50705 * 109.46854 * 294.93883 * 10 9 7 25 25 C 1.38230 * 120.00207 * 326.68295 * 24 10 9 26 26 C 1.38236 * 120.00098 * 179.78820 * 25 24 10 27 27 C 1.38240 * 119.99551 * 0.47036 * 26 25 24 28 28 C 1.38228 * 120.00047 * 359.76278 * 27 26 25 29 29 C 1.38230 * 120.00240 * 0.02562 * 28 27 26 30 30 H 0.97002 * 120.00443 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99709 * 5.05290 * 9 7 2 32 32 H 1.09005 * 109.47055 * 294.99711 * 12 10 9 33 33 H 1.09000 * 109.47292 * 175.00514 * 12 10 9 34 34 H 0.96998 * 120.00254 * 359.97438 * 13 12 10 35 35 H 1.08998 * 109.47116 * 60.00377 * 16 14 13 36 36 H 1.08996 * 109.47217 * 300.00165 * 16 14 13 37 37 H 1.08992 * 110.84865 * 33.85532 * 20 18 17 38 38 H 1.09006 * 110.84007 * 270.44192 * 20 18 17 39 39 H 1.09002 * 109.83273 * 98.05404 * 21 20 18 40 40 H 1.08999 * 109.82551 * 219.02547 * 21 20 18 41 41 H 1.08996 * 110.30621 * 143.34278 * 23 22 21 42 42 H 1.09004 * 110.30523 * 265.41254 * 23 22 21 43 43 H 1.08000 * 119.99882 * 0.02562 * 25 24 10 44 44 H 1.08000 * 120.00093 * 180.25199 * 26 25 24 45 45 H 1.07999 * 119.99564 * 179.79165 * 27 26 25 46 46 H 1.08003 * 119.99829 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.00263 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4659 -0.1133 11 1 5.1802 -2.2614 -0.1867 12 6 3.6490 -3.2144 -1.3647 13 7 3.7980 -2.3469 -2.5358 14 6 3.4503 -2.7980 -3.7572 15 8 3.0136 -3.9220 -3.8869 16 6 3.6042 -1.9057 -4.9619 17 8 3.1715 -2.6048 -6.1309 18 6 3.2772 -1.8438 -7.3357 19 1 4.0506 -1.0806 -7.2496 20 6 3.5338 -2.7654 -8.5592 21 6 2.9148 -1.9572 -9.7198 22 8 1.9747 -1.0368 -9.1534 23 6 1.9104 -1.2154 -7.7295 24 6 3.8449 -3.3112 1.1054 25 6 3.6456 -2.7096 2.3338 26 6 3.3961 -3.4848 3.4508 27 6 3.3556 -4.8622 3.3411 28 6 3.5597 -5.4641 2.1136 29 6 3.8048 -4.6887 0.9958 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3653 0.0729 32 1 2.6021 -3.4968 -1.2526 33 1 4.2549 -4.1107 -1.4971 34 1 4.1469 -1.4477 -2.4321 35 1 4.6510 -1.6234 -5.0737 36 1 2.9982 -1.0094 -4.8300 37 1 3.0252 -3.7217 -8.4379 38 1 4.6023 -2.9133 -8.7159 39 1 3.6961 -1.4100 -10.2473 40 1 2.4042 -2.6306 -10.4081 41 1 1.7796 -0.2538 -7.2332 42 1 1.0938 -1.8889 -7.4692 43 1 3.6809 -1.6336 2.4202 44 1 3.2364 -3.0145 4.4098 45 1 3.1641 -5.4680 4.2144 46 1 3.5277 -6.5402 2.0278 47 1 3.9647 -5.1589 0.0368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691782042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:54 Heat of formation + Delta-G solvation = -75.221717 kcal Electronic energy + Delta-G solvation = -28565.830287 eV Core-core repulsion = 24521.540606 eV Total energy + Delta-G solvation = -4044.289682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 35.37 seconds Orbital eigenvalues (eV) -39.94232 -39.40327 -38.77392 -37.08466 -35.95678 -33.53294 -32.06419 -31.69041 -30.59808 -29.94282 -29.33577 -28.36785 -26.54275 -24.17639 -22.71436 -22.30540 -21.78952 -21.76062 -20.23271 -19.74374 -18.12257 -17.55153 -17.32603 -16.53989 -16.35457 -15.93177 -15.64258 -15.14705 -15.00217 -14.85096 -14.62770 -14.24894 -14.16142 -13.93497 -13.53085 -13.48988 -12.91766 -12.86421 -12.75584 -12.53979 -12.45100 -12.22480 -12.16018 -11.79663 -11.67047 -11.54158 -11.09438 -10.99624 -10.89922 -10.67648 -10.50720 -10.18322 -9.90836 -9.65607 -9.65126 -9.49095 -9.14970 -8.56383 -8.40849 -8.18936 -7.48159 -5.85596 -3.26580 1.84187 1.92588 2.83725 2.97164 3.23501 3.24756 3.35472 3.64429 4.04577 4.17880 4.27703 4.45995 4.58501 4.63481 4.84688 4.92156 5.05765 5.06874 5.09556 5.24091 5.30585 5.34498 5.40472 5.41792 5.44710 5.49127 5.54852 5.56515 5.67921 5.69021 5.72672 5.81774 5.95456 6.11756 6.18581 6.46354 6.54970 6.58900 6.65253 6.80805 6.91627 6.97136 7.01370 7.20865 7.50925 7.86864 7.91361 8.30802 8.59165 9.06524 9.76809 9.93272 11.31975 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.002988 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.152068 B = 9368.419964 C =11120.766868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.741 5.741 10 C 0.204 3.796 11 H 0.075 0.925 12 C 0.119 3.881 13 N -0.701 5.701 14 C 0.513 3.487 15 O -0.531 6.531 16 C 0.041 3.959 17 O -0.342 6.342 18 C 0.053 3.947 19 H 0.083 0.917 20 C -0.155 4.155 21 C 0.052 3.948 22 O -0.380 6.380 23 C 0.029 3.971 24 C -0.079 4.079 25 C -0.076 4.076 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.129 4.129 29 C -0.124 4.124 30 H 0.260 0.740 31 H 0.364 0.636 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.664 -3.899 -8.604 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.185 4.185 3 Si 0.710 3.290 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.093 3.907 11 H 0.093 0.907 12 C -0.006 4.006 13 N -0.353 5.353 14 C 0.298 3.702 15 O -0.408 6.408 16 C -0.039 4.039 17 O -0.260 6.260 18 C -0.006 4.006 19 H 0.101 0.899 20 C -0.192 4.192 21 C -0.024 4.024 22 O -0.300 6.300 23 C -0.048 4.048 24 C -0.082 4.082 25 C -0.094 4.094 26 C -0.146 4.146 27 C -0.150 4.150 28 C -0.147 4.147 29 C -0.142 4.142 30 H 0.070 0.930 31 H 0.198 0.802 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.143 0.857 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.885 -4.794 -8.831 15.563 hybrid contribution 0.656 1.854 0.379 2.003 sum 12.541 -2.940 -8.452 15.406 Atomic orbital electron populations 1.69692 1.05137 1.25778 1.56687 1.24670 0.95086 0.96912 1.01798 0.86664 0.79165 0.85517 0.77654 1.21213 1.21848 1.20395 1.18913 0.80055 0.94657 1.43365 0.89093 1.42808 1.04498 1.01984 1.88949 1.19292 0.94961 0.86624 0.89794 0.90745 1.21797 1.02582 0.91848 0.84357 1.45536 1.65461 1.18316 1.05997 1.19961 0.78498 0.87767 0.84018 1.90704 1.44289 1.20008 1.85756 1.22356 1.00445 0.95427 0.85630 1.88053 1.85885 1.38719 1.13315 1.23929 0.97139 0.93909 0.85631 0.89904 1.23167 1.02747 1.00291 0.93036 1.23076 0.92095 0.91666 0.95567 1.88432 1.62657 1.58904 1.19994 1.23971 0.97819 1.01790 0.81207 1.20573 0.98231 0.93420 0.96016 1.20968 0.96621 1.00294 0.91553 1.21105 1.01079 0.93863 0.98596 1.21002 1.01810 0.94911 0.97300 1.20988 1.01480 0.99189 0.93089 1.21109 1.01116 0.93621 0.98390 0.92991 0.80248 0.90560 0.92284 0.76542 0.90387 0.89835 0.89074 0.89423 0.91049 0.90992 0.89187 0.90644 0.85688 0.86854 0.87072 0.86909 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.97 55.49 0.78 -26.92 16 2 C 0.01 0.31 5.50 -17.44 -0.10 0.22 16 3 Si 0.88 19.97 27.79 -169.99 -4.72 15.24 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -5.77 6.45 56.52 0.36 -5.40 16 7 C -0.24 -6.00 9.01 -15.06 -0.14 -6.14 16 8 H 0.09 2.62 7.41 -52.49 -0.39 2.23 16 9 N -0.74 -14.60 3.61 -54.55 -0.20 -14.79 16 10 C 0.20 3.37 3.26 -69.08 -0.23 3.14 16 11 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 12 C 0.12 2.04 3.87 -4.05 -0.02 2.02 16 13 N -0.70 -11.15 5.39 -60.30 -0.32 -11.48 16 14 C 0.51 8.71 7.91 -10.99 -0.09 8.63 16 15 O -0.53 -11.25 16.50 -14.35 -0.24 -11.49 16 16 C 0.04 0.54 6.25 36.01 0.23 0.76 16 17 O -0.34 -4.87 9.71 -55.14 -0.54 -5.41 16 18 C 0.05 0.57 3.63 -24.18 -0.09 0.48 16 19 H 0.08 0.73 7.83 -51.93 -0.41 0.32 16 20 C -0.15 -1.41 6.74 -24.78 -0.17 -1.58 16 21 C 0.05 0.47 7.80 37.88 0.30 0.76 16 22 O -0.38 -4.58 11.36 -35.23 -0.40 -4.98 16 23 C 0.03 0.34 7.55 38.49 0.29 0.63 16 24 C -0.08 -1.36 5.19 -104.62 -0.54 -1.90 16 25 C -0.08 -1.34 9.03 -39.58 -0.36 -1.70 16 26 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 27 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 28 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 29 C -0.12 -1.95 9.14 -39.59 -0.36 -2.32 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.36 6.93 5.87 -40.82 -0.24 6.69 16 32 H 0.08 1.60 7.30 -51.93 -0.38 1.22 16 33 H 0.06 0.92 6.85 -51.93 -0.36 0.57 16 34 H 0.40 5.62 8.14 -40.82 -0.33 5.29 16 35 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.13 2.30 7.51 -52.49 -0.39 1.91 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 47 H 0.12 1.71 6.22 -52.48 -0.33 1.39 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -33.41 386.87 -9.34 -42.75 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -7.07 Total: 15.30 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.46 Total: -4.06 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.25 Total: -53.19 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.17 Total: -21.87 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.72 Total: 15.24 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.41 -9.34 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691782042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.476 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 35.37 seconds