Wall clock time and date at job start Tue Mar 31 2020 23:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47339 * 270.00513 * 3 2 1 5 5 H 1.48500 * 109.46889 * 30.00801 * 3 2 1 6 6 H 1.48502 * 109.46927 * 150.00024 * 3 2 1 7 7 C 1.38811 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00293 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00152 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00117 * 185.04835 * 9 7 2 11 11 H 1.09003 * 109.47054 * 174.93579 * 10 9 7 12 12 C 1.52997 * 109.47024 * 54.93885 * 10 9 7 13 13 N 1.46495 * 109.47306 * 54.99822 * 12 10 9 14 14 C 1.34774 * 120.00095 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99889 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99905 * 180.02562 * 14 13 12 17 17 O 1.42910 * 109.47028 * 180.02562 * 16 14 13 18 18 C 1.42896 * 113.99841 * 180.02562 * 17 16 14 19 19 H 1.08999 * 111.02613 * 25.77803 * 18 17 16 20 20 C 1.55308 * 111.12408 * 150.00525 * 18 17 16 21 21 C 1.54379 * 102.43728 * 152.15307 * 20 18 17 22 22 O 1.43236 * 107.59183 * 338.53833 * 21 20 18 23 23 C 1.43652 * 109.96803 * 358.29091 * 22 21 20 24 24 C 1.50705 * 109.46854 * 294.93883 * 10 9 7 25 25 C 1.38230 * 120.00207 * 326.68295 * 24 10 9 26 26 C 1.38236 * 120.00098 * 179.78820 * 25 24 10 27 27 C 1.38240 * 119.99551 * 0.47036 * 26 25 24 28 28 C 1.38228 * 120.00047 * 359.76278 * 27 26 25 29 29 C 1.38230 * 120.00240 * 0.02562 * 28 27 26 30 30 H 0.97002 * 120.00443 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99709 * 5.05290 * 9 7 2 32 32 H 1.09005 * 109.47055 * 294.99711 * 12 10 9 33 33 H 1.09000 * 109.47292 * 175.00514 * 12 10 9 34 34 H 0.96998 * 120.00254 * 359.97438 * 13 12 10 35 35 H 1.08998 * 109.47116 * 60.00377 * 16 14 13 36 36 H 1.08996 * 109.47217 * 300.00165 * 16 14 13 37 37 H 1.08992 * 110.84865 * 33.85532 * 20 18 17 38 38 H 1.09006 * 110.84007 * 270.44192 * 20 18 17 39 39 H 1.09002 * 109.83273 * 98.05404 * 21 20 18 40 40 H 1.08999 * 109.82551 * 219.02547 * 21 20 18 41 41 H 1.08996 * 110.30621 * 143.34278 * 23 22 21 42 42 H 1.09004 * 110.30523 * 265.41254 * 23 22 21 43 43 H 1.08000 * 119.99882 * 0.02562 * 25 24 10 44 44 H 1.08000 * 120.00093 * 180.25199 * 26 25 24 45 45 H 1.07999 * 119.99564 * 179.79165 * 27 26 25 46 46 H 1.08003 * 119.99829 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.00263 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4659 -0.1133 11 1 5.1802 -2.2614 -0.1867 12 6 3.6490 -3.2144 -1.3647 13 7 3.7980 -2.3469 -2.5358 14 6 3.4503 -2.7980 -3.7572 15 8 3.0136 -3.9220 -3.8869 16 6 3.6042 -1.9057 -4.9619 17 8 3.1715 -2.6048 -6.1309 18 6 3.2772 -1.8438 -7.3357 19 1 4.0506 -1.0806 -7.2496 20 6 3.5338 -2.7654 -8.5592 21 6 2.9148 -1.9572 -9.7198 22 8 1.9747 -1.0368 -9.1534 23 6 1.9104 -1.2154 -7.7295 24 6 3.8449 -3.3112 1.1054 25 6 3.6456 -2.7096 2.3338 26 6 3.3961 -3.4848 3.4508 27 6 3.3556 -4.8622 3.3411 28 6 3.5597 -5.4641 2.1136 29 6 3.8048 -4.6887 0.9958 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3653 0.0729 32 1 2.6021 -3.4968 -1.2526 33 1 4.2549 -4.1107 -1.4971 34 1 4.1469 -1.4477 -2.4321 35 1 4.6510 -1.6234 -5.0737 36 1 2.9982 -1.0094 -4.8300 37 1 3.0252 -3.7217 -8.4379 38 1 4.6023 -2.9133 -8.7159 39 1 3.6961 -1.4100 -10.2473 40 1 2.4042 -2.6306 -10.4081 41 1 1.7796 -0.2538 -7.2332 42 1 1.0938 -1.8889 -7.4692 43 1 3.6809 -1.6336 2.4202 44 1 3.2364 -3.0145 4.4098 45 1 3.1641 -5.4680 4.2144 46 1 3.5277 -6.5402 2.0278 47 1 3.9647 -5.1589 0.0368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691782042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:41 Heat of formation + Delta-G solvation = -98.718167 kcal Electronic energy + Delta-G solvation = -28566.849170 eV Core-core repulsion = 24521.540606 eV Total energy + Delta-G solvation = -4045.308564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 13.48 seconds Orbital eigenvalues (eV) -41.04055 -40.52725 -40.01534 -38.12480 -37.41593 -35.13295 -33.76161 -32.54080 -32.01435 -31.38980 -30.28575 -29.47595 -27.82910 -25.86216 -23.80175 -23.45688 -23.04430 -22.56997 -21.59404 -21.13694 -19.98501 -18.48992 -18.44564 -17.77905 -17.38133 -17.02336 -16.81744 -16.54318 -16.38275 -15.97775 -15.84041 -15.70342 -15.39382 -15.12343 -14.74633 -14.70595 -14.44563 -14.17370 -14.01697 -13.76291 -13.56490 -13.47483 -13.28538 -13.19303 -12.85638 -12.60550 -12.52460 -12.40331 -12.12708 -11.85572 -11.78885 -11.76017 -11.55458 -11.02849 -10.84395 -10.78417 -10.52106 -9.97220 -9.66165 -9.55925 -9.25779 -7.92857 -5.31000 0.59783 0.67056 1.41841 1.46756 1.54462 1.61039 1.82165 2.54544 2.70698 3.01209 3.12223 3.37484 3.40118 3.58319 3.75432 3.81427 3.92858 4.01735 4.12671 4.16277 4.18096 4.24419 4.27431 4.28805 4.31179 4.39741 4.46244 4.61721 4.67420 4.70371 4.80342 4.82526 4.90060 4.91260 5.02335 5.11573 5.24364 5.30543 5.49566 5.71439 5.74911 5.81970 5.84919 5.94043 6.04279 6.27559 6.27913 6.63983 7.14309 7.29833 7.82262 8.06032 9.28896 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.002988 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.152068 B = 9368.419964 C =11120.766868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.063 4.063 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.313 1.313 6 H -0.242 1.242 7 C -0.200 4.200 8 H 0.042 0.958 9 N -0.735 5.735 10 C 0.207 3.793 11 H 0.115 0.885 12 C 0.129 3.871 13 N -0.695 5.695 14 C 0.505 3.495 15 O -0.582 6.582 16 C 0.046 3.954 17 O -0.373 6.373 18 C 0.051 3.949 19 H 0.113 0.887 20 C -0.151 4.151 21 C 0.048 3.952 22 O -0.400 6.400 23 C 0.026 3.974 24 C -0.098 4.098 25 C -0.101 4.101 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.132 4.132 29 C -0.134 4.134 30 H 0.253 0.747 31 H 0.374 0.626 32 H 0.027 0.973 33 H 0.076 0.924 34 H 0.412 0.588 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.125 -3.323 -8.962 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.241 1.241 6 H -0.166 1.166 7 C -0.331 4.331 8 H 0.060 0.940 9 N -0.377 5.377 10 C 0.098 3.902 11 H 0.133 0.867 12 C 0.003 3.997 13 N -0.347 5.347 14 C 0.291 3.709 15 O -0.463 6.463 16 C -0.033 4.033 17 O -0.291 6.291 18 C -0.007 4.007 19 H 0.130 0.870 20 C -0.189 4.189 21 C -0.028 4.028 22 O -0.320 6.320 23 C -0.051 4.051 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.156 4.156 27 C -0.151 4.151 28 C -0.149 4.149 29 C -0.152 4.152 30 H 0.062 0.938 31 H 0.209 0.791 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.249 0.751 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.130 0.870 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.437 -4.222 -9.191 18.455 hybrid contribution -0.439 1.481 0.515 1.628 sum 14.998 -2.741 -8.676 17.542 Atomic orbital electron populations 1.69922 1.07656 1.26279 1.60108 1.25466 0.95779 1.01151 1.02939 0.85461 0.78724 0.79489 0.78239 1.19938 1.24079 1.16606 1.18578 0.82166 0.92393 1.40009 0.94017 1.42635 1.02516 1.03814 1.88752 1.19503 0.96520 0.85036 0.89172 0.86735 1.21602 0.99894 0.93022 0.85202 1.45505 1.64928 1.18671 1.05553 1.20803 0.77166 0.87658 0.85248 1.90676 1.46557 1.22453 1.86569 1.22419 1.03279 0.94020 0.83603 1.88024 1.86431 1.40139 1.14504 1.24133 0.97188 0.94661 0.84759 0.86973 1.23186 1.04093 0.99230 0.92357 1.23292 0.92268 0.91696 0.95524 1.88406 1.63764 1.59793 1.20042 1.23951 0.97986 1.01731 0.81452 1.20630 0.99334 0.94232 0.95919 1.21007 0.98414 0.99923 0.92589 1.21382 1.00709 0.94661 0.98851 1.21377 1.00561 0.94701 0.98420 1.21376 1.00192 1.00661 0.92713 1.21302 1.01212 0.93330 0.99404 0.93837 0.79139 0.95415 0.90578 0.75115 0.85898 0.88807 0.90708 0.86986 0.88689 0.90335 0.88550 0.92917 0.87025 0.85246 0.84117 0.84198 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.72 13.97 21.65 0.30 -61.42 16 2 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 3 Si 0.95 41.03 27.79 68.60 1.91 42.94 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.31 -14.55 7.11 99.48 0.71 -13.85 16 6 H -0.24 -8.86 6.45 99.48 0.64 -8.22 16 7 C -0.20 -10.24 9.01 84.03 0.76 -9.48 16 8 H 0.04 2.54 7.41 -2.91 -0.02 2.52 16 9 N -0.73 -28.16 3.61 -326.49 -1.18 -29.34 16 10 C 0.21 6.57 3.26 44.25 0.14 6.72 16 11 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 12 C 0.13 4.37 3.87 86.38 0.33 4.71 16 13 N -0.69 -21.37 5.39 -463.07 -2.49 -23.87 16 14 C 0.50 16.90 7.91 87.66 0.69 17.59 16 15 O -0.58 -25.28 16.50 15.99 0.26 -25.02 16 16 C 0.05 1.10 6.25 71.24 0.45 1.54 16 17 O -0.37 -10.24 9.71 -129.95 -1.26 -11.50 16 18 C 0.05 1.00 3.63 32.25 0.12 1.12 16 19 H 0.11 1.55 7.83 -2.39 -0.02 1.53 16 20 C -0.15 -2.50 6.74 31.86 0.21 -2.28 16 21 C 0.05 0.76 7.80 72.45 0.56 1.33 16 22 O -0.40 -9.25 11.36 -148.98 -1.69 -10.94 16 23 C 0.03 0.59 7.55 72.84 0.55 1.14 16 24 C -0.10 -3.32 5.19 -19.87 -0.10 -3.42 16 25 C -0.10 -3.51 9.03 22.27 0.20 -3.31 16 26 C -0.14 -4.23 10.05 22.27 0.22 -4.01 16 27 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 28 C -0.13 -3.63 10.05 22.27 0.22 -3.40 16 29 C -0.13 -4.12 9.14 22.27 0.20 -3.92 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.37 13.17 5.87 -92.71 -0.54 12.63 16 32 H 0.03 1.22 7.30 -2.38 -0.02 1.20 16 33 H 0.08 2.33 6.85 -2.39 -0.02 2.32 16 34 H 0.41 10.59 8.14 -92.71 -0.75 9.83 16 35 H 0.12 1.83 8.12 -2.39 -0.02 1.81 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.11 4.09 7.51 -2.91 -0.02 4.07 16 44 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 45 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 46 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.13 3.59 6.22 -2.91 -0.02 3.57 16 Total: -1.00 -78.10 386.87 0.73 -77.37 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -0.37 Total: 43.81 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.26 Total: -2.03 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -3.37 Total: -114.63 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -2.69 Total: -47.46 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.91 Total: 42.94 kcal Total: -78.10 0.73 -77.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691782042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.345 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.48 seconds