Wall clock time and date at job start Tue Mar 31 2020 19:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99408 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46855 * 299.99389 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46965 * 180.02562 * 18 16 15 20 20 C 1.35126 * 125.69345 * 125.00099 * 19 18 16 21 21 N 1.36817 * 107.18485 * 179.97438 * 20 19 18 22 22 C 1.36604 * 132.53918 * 180.02562 * 21 20 19 23 23 C 1.35140 * 120.56834 * 179.97438 * 22 21 20 24 24 F 1.35108 * 119.87267 * 180.02562 * 23 22 21 25 25 C 1.40605 * 120.24975 * 0.03511 * 23 22 21 26 26 C 1.36016 * 119.68831 * 359.97438 * 25 23 22 27 27 C 1.37022 * 107.01411 * 359.97438 * 21 20 19 28 28 N 1.32613 * 108.03352 * 359.75763 * 27 21 20 29 29 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 32 32 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 33 33 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 34 34 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 37 37 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 38 38 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 39 39 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 40 40 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 41 41 H 1.08001 * 126.40990 * 0.02562 * 20 19 18 42 42 H 1.08000 * 119.71597 * 359.97438 * 22 21 20 43 43 H 1.08003 * 120.15288 * 179.97438 * 25 23 22 44 44 H 1.07991 * 120.30998 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.5157 -1.6757 -6.7281 12 1 1.5906 0.6060 -7.5448 13 1 3.5834 -0.4141 -6.6121 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.0994 -0.3453 6.1237 20 6 2.8798 0.1974 7.0841 21 7 3.1069 -0.7759 8.0184 22 6 3.8166 -0.7882 9.1856 23 6 3.8806 -1.9081 9.9392 24 9 4.5862 -1.9044 11.0914 25 6 3.2159 -3.0771 9.5288 26 6 2.5064 -3.0764 8.3683 27 6 2.4481 -1.9001 7.5945 28 7 1.8420 -1.6138 6.4503 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8594 -2.3517 35 1 0.6804 1.9069 -5.4839 36 1 1.6053 -1.7197 1.2952 37 1 3.1263 -0.7995 1.2056 38 1 1.1487 0.8594 2.3518 39 1 2.0324 1.3633 4.8474 40 1 0.5109 0.4440 4.9368 41 1 3.2536 1.2103 7.1098 42 1 4.3310 0.1048 9.5088 43 1 3.2685 -3.9713 10.1321 44 1 1.9917 -3.9686 8.0437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698764764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:06 Heat of formation + Delta-G solvation = 17.229713 kcal Electronic energy + Delta-G solvation = -26701.543835 eV Core-core repulsion = 22570.095595 eV Total energy + Delta-G solvation = -4131.448241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 21.82 seconds Orbital eigenvalues (eV) -49.58687 -43.23267 -39.65573 -37.66884 -36.70864 -34.30557 -34.16003 -32.64129 -31.95110 -30.03815 -29.51224 -28.29999 -26.33677 -25.18686 -24.07199 -23.20806 -22.52600 -21.37383 -20.40930 -19.71560 -18.79528 -18.12211 -17.38721 -16.87180 -16.83920 -16.49548 -15.92991 -15.75159 -15.57281 -15.43596 -15.00544 -14.60012 -14.40750 -14.20611 -13.88790 -13.65936 -13.58185 -13.21056 -12.97586 -12.84052 -12.41596 -12.17957 -12.13226 -11.97955 -11.66528 -11.51466 -11.03636 -10.87540 -10.66533 -10.53836 -10.40999 -10.37679 -10.07626 -9.79772 -9.63266 -9.02121 -8.92824 -8.85232 -8.34853 -6.90248 -5.75290 -3.03453 0.10573 0.67777 1.98120 2.29681 2.72091 2.96625 3.32768 3.45998 3.47846 3.50141 3.51376 3.65402 3.85295 4.19782 4.32497 4.57651 4.61137 4.72939 4.89852 4.98310 5.09897 5.13861 5.23003 5.26652 5.28982 5.36350 5.43109 5.47407 5.59813 5.86850 5.91383 6.01682 6.04425 6.12403 6.17475 6.29156 6.43504 6.54538 6.56368 6.68636 6.80762 6.90534 7.50509 7.56999 7.71915 8.31340 8.43975 9.55155 10.12782 10.47719 11.47639 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.038524 B = 0.001541 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.647512 B =18162.156869 C =18374.739201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.128 3.872 15 N -0.728 5.728 16 C 0.513 3.487 17 O -0.523 6.523 18 C -0.062 4.062 19 C 0.082 3.918 20 C -0.080 4.080 21 N -0.352 5.352 22 C 0.018 3.982 23 C 0.083 3.917 24 F -0.122 7.122 25 C -0.141 4.141 26 C -0.035 4.035 27 C 0.206 3.794 28 N -0.447 5.447 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.400 0.600 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.187 0.813 42 H 0.173 0.827 43 H 0.155 0.845 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 -1.383 33.684 33.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.005 3.995 15 N -0.381 5.381 16 C 0.297 3.703 17 O -0.398 6.398 18 C -0.103 4.103 19 C -0.052 4.052 20 C -0.211 4.211 21 N -0.024 5.024 22 C -0.106 4.106 23 C 0.061 3.939 24 F -0.101 7.101 25 C -0.165 4.165 26 C -0.055 4.055 27 C -0.037 4.037 28 N -0.166 5.166 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.204 0.796 42 H 0.190 0.810 43 H 0.173 0.827 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.402 -2.725 33.184 33.383 hybrid contribution 0.562 1.040 -0.327 1.227 sum 2.964 -1.685 32.857 33.034 Atomic orbital electron populations 1.21787 0.94673 1.01949 1.01442 1.21546 0.96705 1.00438 0.94211 0.90578 1.20580 0.96589 0.94236 0.85423 1.42327 1.66962 1.27644 1.00569 1.19208 1.28609 1.05527 0.83702 0.91216 1.24725 1.00980 0.97477 0.97818 1.69645 1.43301 1.16864 1.28555 0.86254 0.77995 0.77709 0.84151 1.21285 1.21709 1.21292 1.21377 0.99970 0.95293 0.82886 1.46029 1.58201 1.27987 1.05842 1.20242 0.79975 0.85895 0.84151 1.90753 1.38961 1.23753 1.86368 1.20023 1.03445 0.98596 0.88225 1.20113 0.98477 0.90825 0.95812 1.22399 1.10326 0.95851 0.92544 1.42432 1.32698 1.12198 1.15033 1.21166 1.01071 1.00701 0.87659 1.16607 0.97970 0.94297 0.85072 1.91565 1.76182 1.96921 1.45438 1.21073 0.99156 0.98211 0.98055 1.20211 0.97869 0.95625 0.91813 1.21027 0.98820 0.89024 0.94784 1.70698 1.22665 1.14199 1.09016 0.91223 0.92842 0.93850 0.96006 0.96173 0.78216 0.93516 0.91435 0.91556 0.76615 0.87124 0.87012 0.79564 0.80992 0.82710 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.15 0.33 -1.74 16 2 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 3 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.36 5.33 -59.91 -0.32 -18.68 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 10 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.13 1.80 5.06 -4.04 -0.02 1.78 16 15 N -0.73 -8.26 5.28 -60.30 -0.32 -8.58 16 16 C 0.51 6.47 7.82 -10.99 -0.09 6.39 16 17 O -0.52 -9.13 15.57 5.55 0.09 -9.05 16 18 C -0.06 -0.52 6.26 -29.04 -0.18 -0.71 16 19 C 0.08 0.90 5.84 -82.98 -0.48 0.41 16 20 C -0.08 -0.68 11.63 -16.43 -0.19 -0.87 16 21 N -0.35 -3.22 2.95 -62.58 -0.18 -3.40 16 22 C 0.02 0.12 10.92 -16.53 -0.18 -0.06 16 23 C 0.08 0.55 7.25 -39.79 -0.29 0.26 16 24 F -0.12 -0.83 17.26 2.25 0.04 -0.79 16 25 C -0.14 -0.85 10.05 -39.49 -0.40 -1.25 16 26 C -0.04 -0.28 10.10 -39.36 -0.40 -0.67 16 27 C 0.21 2.28 7.81 -156.05 -1.22 1.06 16 28 N -0.45 -5.99 10.69 -9.01 -0.10 -6.09 16 29 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 9.99 6.85 -40.82 -0.28 9.71 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 3.42 7.66 -40.82 -0.31 3.11 16 39 H 0.11 0.54 8.10 -51.93 -0.42 0.12 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.16 0.52 8.06 -52.48 -0.42 0.10 16 44 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -36.99 378.62 -8.95 -45.94 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.96 Total: 6.38 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.61 Total: -1.54 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.19 Total: -64.15 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.04 Total: -0.79 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.99 -8.95 -45.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698764764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.166 kcal (2) G-P(sol) polarization free energy of solvation -36.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.82 seconds