Wall clock time and date at job start Tue Mar 31 2020 19:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99408 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46855 * 299.99389 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46965 * 180.02562 * 18 16 15 20 20 C 1.35126 * 125.69345 * 125.00099 * 19 18 16 21 21 N 1.36817 * 107.18485 * 179.97438 * 20 19 18 22 22 C 1.36604 * 132.53918 * 180.02562 * 21 20 19 23 23 C 1.35140 * 120.56834 * 179.97438 * 22 21 20 24 24 F 1.35108 * 119.87267 * 180.02562 * 23 22 21 25 25 C 1.40605 * 120.24975 * 0.03511 * 23 22 21 26 26 C 1.36016 * 119.68831 * 359.97438 * 25 23 22 27 27 C 1.37022 * 107.01411 * 359.97438 * 21 20 19 28 28 N 1.32613 * 108.03352 * 359.75763 * 27 21 20 29 29 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 30 30 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 32 32 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 33 33 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 34 34 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 35 35 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 37 37 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 38 38 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 39 39 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 40 40 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 41 41 H 1.08001 * 126.40990 * 0.02562 * 20 19 18 42 42 H 1.08000 * 119.71597 * 359.97438 * 22 21 20 43 43 H 1.08003 * 120.15288 * 179.97438 * 25 23 22 44 44 H 1.07991 * 120.30998 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.5157 -1.6757 -6.7281 12 1 1.5906 0.6060 -7.5448 13 1 3.5834 -0.4141 -6.6121 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.0994 -0.3453 6.1237 20 6 2.8798 0.1974 7.0841 21 7 3.1069 -0.7759 8.0184 22 6 3.8166 -0.7882 9.1856 23 6 3.8806 -1.9081 9.9392 24 9 4.5862 -1.9044 11.0914 25 6 3.2159 -3.0771 9.5288 26 6 2.5064 -3.0764 8.3683 27 6 2.4481 -1.9001 7.5945 28 7 1.8420 -1.6138 6.4503 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.1488 0.8594 -2.3517 35 1 0.6804 1.9069 -5.4839 36 1 1.6053 -1.7197 1.2952 37 1 3.1263 -0.7995 1.2056 38 1 1.1487 0.8594 2.3518 39 1 2.0324 1.3633 4.8474 40 1 0.5109 0.4440 4.9368 41 1 3.2536 1.2103 7.1098 42 1 4.3310 0.1048 9.5088 43 1 3.2685 -3.9713 10.1321 44 1 1.9917 -3.9686 8.0437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698764764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:37 Heat of formation + Delta-G solvation = -7.436613 kcal Electronic energy + Delta-G solvation = -26702.613448 eV Core-core repulsion = 22570.095595 eV Total energy + Delta-G solvation = -4132.517853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 24.84 seconds Orbital eigenvalues (eV) -50.09721 -43.85262 -40.66897 -38.42955 -37.96938 -35.90033 -34.77017 -34.10680 -32.85727 -31.76862 -30.12583 -29.03116 -27.64763 -26.78534 -24.77154 -24.19649 -23.81321 -22.23094 -21.51593 -20.87635 -19.42655 -19.14473 -18.67492 -17.94015 -17.43724 -17.23328 -17.06399 -16.60316 -16.41486 -16.18773 -16.10375 -15.71101 -15.52426 -15.37839 -15.12325 -14.74555 -14.51315 -14.33413 -14.14895 -13.91615 -13.62513 -13.52873 -13.07887 -12.94192 -12.76152 -12.65364 -12.35052 -12.20761 -12.14214 -12.05871 -11.96638 -11.68531 -11.63085 -11.12834 -10.92918 -10.81420 -10.00832 -9.63963 -8.98450 -8.93844 -7.94585 -5.22774 -0.42150 0.10355 1.41989 1.48117 1.50867 1.57013 1.66432 1.77856 2.26181 2.46469 2.58655 2.93014 3.10302 3.35824 3.38761 3.74099 3.76872 3.80444 3.98155 3.99731 4.02663 4.13932 4.32717 4.38810 4.46355 4.57973 4.60114 4.67491 4.74256 4.80283 4.82103 4.83819 4.92575 4.96047 5.08385 5.14564 5.37013 5.38810 5.46331 5.50377 5.53146 5.55352 5.97693 6.27969 6.67698 6.85560 7.34949 7.39483 8.10072 8.35222 9.28456 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.038524 B = 0.001541 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.647512 B =18162.156869 C =18374.739201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.082 0.918 4 C 0.156 3.844 5 N -0.740 5.740 6 C -0.251 4.251 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.973 3.027 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.141 3.859 15 N -0.715 5.715 16 C 0.510 3.490 17 O -0.578 6.578 18 C -0.052 4.052 19 C 0.049 3.951 20 C -0.073 4.073 21 N -0.357 5.357 22 C 0.018 3.982 23 C 0.076 3.924 24 F -0.122 7.122 25 C -0.124 4.124 26 C -0.058 4.058 27 C 0.182 3.818 28 N -0.500 5.500 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.153 0.847 40 H 0.131 0.869 41 H 0.226 0.774 42 H 0.204 0.796 43 H 0.183 0.817 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -0.416 35.478 35.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.101 0.899 4 C 0.028 3.972 5 N -0.383 5.383 6 C -0.383 4.383 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.016 3.984 15 N -0.369 5.369 16 C 0.297 3.703 17 O -0.457 6.457 18 C -0.093 4.093 19 C -0.084 4.084 20 C -0.204 4.204 21 N -0.029 5.029 22 C -0.105 4.105 23 C 0.054 3.946 24 F -0.100 7.100 25 C -0.148 4.148 26 C -0.078 4.078 27 C -0.061 4.061 28 N -0.220 5.220 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.254 0.746 39 H 0.171 0.829 40 H 0.149 0.851 41 H 0.243 0.757 42 H 0.221 0.779 43 H 0.200 0.800 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.914 -1.745 35.004 35.168 hybrid contribution 0.452 0.690 -0.762 1.123 sum 3.367 -1.055 34.242 34.424 Atomic orbital electron populations 1.21724 0.93867 1.01749 1.01911 1.21320 0.97142 1.00121 0.92539 0.89931 1.20728 0.96430 0.94094 0.85899 1.42476 1.66834 1.27776 1.01240 1.19600 1.28023 1.05476 0.85167 0.91027 1.25524 1.01549 0.97933 1.01426 1.69791 1.44648 1.18033 1.29180 0.85227 0.77857 0.77169 0.79580 1.20590 1.21884 1.20520 1.21030 0.99123 0.94873 0.83364 1.45861 1.57965 1.28228 1.04818 1.21025 0.78683 0.85370 0.85218 1.90734 1.41499 1.26301 1.87124 1.20131 1.04838 0.99311 0.84973 1.20605 0.99835 0.90653 0.97314 1.22997 1.08924 0.96993 0.91473 1.42608 1.32684 1.11880 1.15705 1.21655 1.00278 1.01921 0.86627 1.16733 0.98091 0.94641 0.85160 1.91572 1.76160 1.96932 1.45355 1.21371 0.97211 0.99018 0.97187 1.20412 0.99412 0.95425 0.92583 1.21435 0.99323 0.90467 0.94912 1.70613 1.24713 1.16033 1.10667 0.93857 0.93398 0.90179 0.96457 0.96420 0.78993 0.93933 0.92697 0.92644 0.74600 0.82925 0.85084 0.75710 0.77942 0.80016 0.81111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 8.94 71.98 0.64 -3.20 16 2 C -0.09 -2.77 2.46 -10.80 -0.03 -2.79 16 3 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 4 C 0.16 6.28 5.65 86.38 0.49 6.77 16 5 N -0.74 -37.59 5.33 -343.46 -1.83 -39.42 16 6 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 7 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 8 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 9 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 10 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 C 0.14 3.87 5.06 86.38 0.44 4.31 16 15 N -0.72 -15.05 5.28 -463.07 -2.45 -17.49 16 16 C 0.51 12.36 7.82 87.66 0.69 13.05 16 17 O -0.58 -20.53 15.57 -3.05 -0.05 -20.57 16 18 C -0.05 -0.77 6.26 29.10 0.18 -0.59 16 19 C 0.05 1.02 5.84 41.59 0.24 1.27 16 20 C -0.07 -1.10 11.63 83.20 0.97 -0.13 16 21 N -0.36 -6.07 2.95 -351.92 -1.04 -7.11 16 22 C 0.02 0.20 10.92 83.24 0.91 1.11 16 23 C 0.08 0.88 7.25 22.13 0.16 1.04 16 24 F -0.12 -1.39 17.26 44.97 0.78 -0.61 16 25 C -0.12 -1.34 10.05 22.33 0.22 -1.12 16 26 C -0.06 -0.92 10.10 22.41 0.23 -0.69 16 27 C 0.18 4.05 7.81 134.11 1.05 5.09 16 28 N -0.50 -13.68 10.69 -182.42 -1.95 -15.63 16 29 H 0.04 1.47 7.18 -2.38 -0.02 1.46 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.67 7.18 -2.39 -0.02 1.65 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.38 19.92 6.85 -92.70 -0.64 19.29 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.42 5.91 7.66 -92.71 -0.71 5.20 16 39 H 0.15 0.87 8.10 -2.39 -0.02 0.85 16 40 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.17 2.17 8.06 -2.92 -0.02 2.14 16 Total: -1.00 -83.05 378.62 2.97 -80.08 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.30 Total: 23.65 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 7.49 Total: 7.06 kcal Atomic # 7 Polarization: -131.06 SS G_CDS: -6.98 Total: -138.04 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.78 Total: -0.61 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -83.05 2.97 -80.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698764764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.646 kcal (2) G-P(sol) polarization free energy of solvation -83.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.84 seconds