Wall clock time and date at job start Tue Mar 31 2020 19:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47312 * 60.00457 * 10 8 6 12 12 H 1.48506 * 109.46866 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47236 * 300.00219 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.50695 * 109.47265 * 180.02562 * 18 16 15 20 20 C 1.35135 * 125.69672 * 125.00195 * 19 18 16 21 21 N 1.36808 * 107.18349 * 179.97438 * 20 19 18 22 22 C 1.36611 * 132.53689 * 179.97438 * 21 20 19 23 23 C 1.35134 * 120.56877 * 179.97438 * 22 21 20 24 24 F 1.35108 * 119.87267 * 180.02562 * 23 22 21 25 25 C 1.40604 * 120.24994 * 0.04785 * 23 22 21 26 26 C 1.36016 * 119.68864 * 359.97413 * 25 23 22 27 27 C 1.37024 * 107.01794 * 0.02562 * 21 20 19 28 28 N 1.32612 * 108.03316 * 359.74869 * 27 21 20 29 29 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 30 30 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 32 32 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 33 33 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 34 34 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 35 35 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 37 37 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 38 38 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 39 39 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 40 40 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 41 41 H 1.07997 * 126.40362 * 359.97438 * 20 19 18 42 42 H 1.07995 * 119.71571 * 0.02562 * 22 21 20 43 43 H 1.07997 * 120.15675 * 179.97438 * 25 23 22 44 44 H 1.07999 * 120.31198 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 3.5901 -0.4153 6.6088 12 1 1.6034 0.6146 7.5441 13 1 1.5175 -1.6683 6.7311 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 6 2.1008 -0.3452 -6.1236 20 6 1.3447 -0.7316 -7.1749 21 7 2.1805 -1.3369 -8.0730 22 6 1.9649 -1.9095 -9.2945 23 6 2.9897 -2.4483 -9.9914 24 9 2.7606 -3.0106 -11.1984 25 6 4.2933 -2.4265 -9.4649 26 6 4.5195 -1.8594 -8.2494 27 6 3.4402 -1.3020 -7.5351 28 7 3.3678 -0.6934 -6.3592 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.1262 -0.7995 1.2057 33 1 1.6052 -1.7198 1.2952 34 1 1.1481 0.8591 2.3517 35 1 0.6942 1.9158 5.4829 36 1 3.1263 -0.7996 -1.2054 37 1 1.6054 -1.7199 -1.2951 38 1 1.1483 0.8590 -2.3518 39 1 0.5122 0.4436 -4.9374 40 1 2.0331 1.3638 -4.8470 41 1 0.2799 -0.5891 -7.2853 42 1 0.9671 -1.9310 -9.7071 43 1 5.1111 -2.8580 -10.0229 44 1 5.5168 -1.8368 -7.8357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698764765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:30 Heat of formation + Delta-G solvation = -7.457884 kcal Electronic energy + Delta-G solvation = -26702.923350 eV Core-core repulsion = 22570.404575 eV Total energy + Delta-G solvation = -4132.518775 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 5.61 seconds Orbital eigenvalues (eV) -50.09650 -43.85213 -40.66973 -38.42907 -37.96912 -35.90122 -34.77046 -34.10707 -32.85712 -31.76850 -30.12672 -29.02869 -27.64178 -26.78564 -24.77176 -24.19658 -23.81319 -22.23075 -21.51506 -20.87666 -19.42451 -19.14469 -18.67608 -17.94817 -17.41129 -17.23290 -17.12490 -16.54876 -16.37796 -16.22914 -16.08839 -15.74174 -15.48086 -15.44075 -15.08986 -14.74251 -14.50137 -14.42243 -14.09327 -13.84880 -13.67789 -13.52034 -13.08214 -12.93892 -12.76276 -12.65304 -12.34482 -12.20634 -12.14487 -12.06018 -11.96233 -11.68282 -11.63050 -11.12684 -10.93005 -10.81293 -10.00893 -9.63890 -8.98602 -8.93802 -7.94705 -5.22873 -0.42119 0.10403 1.42092 1.48054 1.50839 1.56979 1.66588 1.77848 2.26206 2.46480 2.58623 2.93016 3.10472 3.35863 3.38659 3.74169 3.76831 3.80476 3.98636 3.99101 4.03536 4.13842 4.32843 4.39026 4.46502 4.57714 4.60259 4.67319 4.74266 4.80240 4.82105 4.84180 4.92660 4.96229 5.08960 5.14874 5.37224 5.38794 5.47045 5.50250 5.53252 5.55510 5.97850 6.27881 6.67759 6.85827 7.34828 7.39517 8.09926 8.35133 9.28378 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.039767 B = 0.001546 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.936474 B =18104.670368 C =18469.301416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.251 4.251 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.973 3.027 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.141 3.859 15 N -0.715 5.715 16 C 0.510 3.490 17 O -0.578 6.578 18 C -0.052 4.052 19 C 0.049 3.951 20 C -0.072 4.072 21 N -0.357 5.357 22 C 0.018 3.982 23 C 0.076 3.924 24 F -0.122 7.122 25 C -0.124 4.124 26 C -0.059 4.059 27 C 0.182 3.818 28 N -0.501 5.501 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.016 0.984 33 H 0.019 0.981 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.416 0.584 39 H 0.154 0.846 40 H 0.130 0.870 41 H 0.227 0.773 42 H 0.204 0.796 43 H 0.182 0.818 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -2.846 -35.730 35.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.098 0.902 4 C 0.028 3.972 5 N -0.383 5.383 6 C -0.383 4.383 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.016 3.984 15 N -0.369 5.369 16 C 0.297 3.703 17 O -0.457 6.457 18 C -0.093 4.093 19 C -0.084 4.084 20 C -0.203 4.203 21 N -0.029 5.029 22 C -0.104 4.104 23 C 0.054 3.946 24 F -0.100 7.100 25 C -0.148 4.148 26 C -0.079 4.079 27 C -0.062 4.062 28 N -0.221 5.221 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.172 0.828 40 H 0.148 0.852 41 H 0.244 0.756 42 H 0.221 0.779 43 H 0.200 0.800 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.116 -3.553 -35.195 35.374 hybrid contribution -0.642 0.020 0.701 0.951 sum -0.758 -3.533 -34.494 34.683 Atomic orbital electron populations 1.21722 0.93595 1.01869 1.01971 1.21322 0.97360 0.99990 0.92533 0.90235 1.20732 0.96355 0.94161 0.85916 1.42476 1.66772 1.27833 1.01246 1.19600 1.28092 1.05409 0.85182 0.91029 1.25527 1.01615 0.97855 1.01444 1.69793 1.44895 1.17768 1.29199 0.85223 0.77843 0.77186 0.79562 1.20584 1.21875 1.20520 1.21029 0.98994 0.94981 0.83369 1.45861 1.57913 1.28278 1.04819 1.21024 0.78573 0.85449 0.85251 1.90733 1.40998 1.26756 1.87167 1.20134 1.05134 0.98900 0.85089 1.20611 0.89159 1.01992 0.96685 1.22999 0.98795 1.07535 0.90967 1.42611 1.09918 1.36836 1.13506 1.21656 1.02594 1.00665 0.85527 1.16729 0.93757 1.00691 0.83455 1.91572 1.95218 1.82627 1.40596 1.21368 0.96654 1.00850 0.95915 1.20409 0.97885 0.96353 0.93222 1.21427 0.86549 1.05364 0.92810 1.70616 1.22162 1.16954 1.12381 0.90002 0.93172 0.93935 0.96629 0.96278 0.79002 0.93932 0.93063 0.92297 0.74599 0.82786 0.85223 0.75632 0.77897 0.80038 0.81163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.94 71.98 0.64 -3.07 16 2 C -0.09 -2.80 2.46 -10.79 -0.03 -2.82 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.16 6.29 5.65 86.38 0.49 6.78 16 5 N -0.74 -37.68 5.33 -343.44 -1.83 -39.51 16 6 C -0.25 -14.26 9.99 84.04 0.84 -13.42 16 7 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 8 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 9 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 10 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.14 3.88 5.06 86.38 0.44 4.32 16 15 N -0.72 -15.06 5.28 -463.06 -2.45 -17.50 16 16 C 0.51 12.36 7.82 87.66 0.69 13.05 16 17 O -0.58 -20.54 15.57 -3.03 -0.05 -20.59 16 18 C -0.05 -0.77 6.26 29.10 0.18 -0.59 16 19 C 0.05 1.01 5.84 41.59 0.24 1.26 16 20 C -0.07 -1.07 11.63 83.20 0.97 -0.10 16 21 N -0.36 -6.04 2.95 -351.93 -1.04 -7.08 16 22 C 0.02 0.21 10.92 83.23 0.91 1.12 16 23 C 0.08 0.87 7.25 22.13 0.16 1.03 16 24 F -0.12 -1.38 17.26 44.97 0.78 -0.61 16 25 C -0.12 -1.35 10.05 22.33 0.22 -1.12 16 26 C -0.06 -0.93 10.10 22.41 0.23 -0.71 16 27 C 0.18 4.06 7.81 134.10 1.05 5.11 16 28 N -0.50 -13.79 10.68 -182.42 -1.95 -15.74 16 29 H 0.08 1.61 7.18 -2.39 -0.02 1.59 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.42 7.18 -2.39 -0.02 1.41 16 32 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.38 19.97 6.85 -92.71 -0.63 19.33 16 35 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.42 5.91 7.65 -92.71 -0.71 5.20 16 39 H 0.15 0.83 8.10 -2.38 -0.02 0.81 16 40 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.23 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 44 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -83.36 378.61 2.97 -80.39 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.30 Total: 23.46 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 7.49 Total: 7.15 kcal Atomic # 7 Polarization: -131.32 SS G_CDS: -6.98 Total: -138.30 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.05 Total: -20.59 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.78 Total: -0.61 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -83.36 2.97 -80.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698764765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.929 kcal (2) G-P(sol) polarization free energy of solvation -83.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.62 seconds