Wall clock time and date at job start Tue Mar 31 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47016 * 239.99796 * 3 2 1 5 5 H 1.48495 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46838 * 120.00095 * 3 2 1 7 7 C 1.38808 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00370 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00315 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47006 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47653 * 304.99694 * 11 10 9 13 13 O 1.42898 * 109.47217 * 65.00196 * 11 10 9 14 14 C 1.53005 * 109.47106 * 184.99999 * 11 10 9 15 15 N 1.46495 * 109.47307 * 180.02562 * 14 11 10 16 16 C 1.34776 * 120.00510 * 179.97438 * 15 14 11 17 17 O 1.21287 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.50691 * 120.00424 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.82346 * 275.56688 * 18 16 15 20 20 C 1.38236 * 119.99926 * 269.16018 * 19 18 16 21 21 C 1.38234 * 120.00064 * 179.76603 * 20 19 18 22 22 C 1.38240 * 119.99661 * 0.50794 * 21 20 19 23 23 C 1.38228 * 120.00173 * 359.74466 * 22 21 20 24 24 C 1.38228 * 120.00257 * 89.43365 * 19 18 16 25 25 C 1.54383 * 109.83304 * 154.58616 * 18 16 15 26 26 C 1.55566 * 102.27674 * 261.84122 * 25 18 16 27 27 C 1.54944 * 100.82489 * 325.88222 * 26 25 18 28 28 O 1.43235 * 109.83446 * 36.45273 * 18 16 15 29 29 H 0.97002 * 119.99626 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99903 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47224 * 59.99796 * 10 9 7 32 32 H 1.08994 * 109.47001 * 299.99308 * 10 9 7 33 33 H 0.96697 * 114.00376 * 59.99833 * 13 11 10 34 34 H 1.08993 * 109.47347 * 60.00139 * 14 11 10 35 35 H 1.09004 * 109.46931 * 300.00235 * 14 11 10 36 36 H 0.97003 * 120.00143 * 359.97438 * 15 14 11 37 37 H 1.08006 * 120.00140 * 359.97438 * 20 19 18 38 38 H 1.07998 * 120.00439 * 180.23178 * 21 20 19 39 39 H 1.08003 * 119.99688 * 179.73065 * 22 21 20 40 40 H 1.07999 * 120.00423 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.99756 * 0.02562 * 24 19 18 42 42 H 1.09007 * 110.84628 * 20.03551 * 25 18 16 43 43 H 1.09002 * 110.85103 * 143.44492 * 25 18 16 44 44 H 1.08997 * 111.22347 * 207.97660 * 26 25 18 45 45 H 1.09003 * 111.13190 * 83.74257 * 26 25 18 46 46 H 1.09002 * 110.30953 * 277.47426 * 27 26 25 47 47 H 1.09000 * 110.30834 * 155.40499 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0017 11 6 1.0638 -4.8196 0.0021 12 1 0.3793 -4.7123 0.8435 13 8 0.3220 -4.8125 -1.2193 14 6 1.8245 -6.1411 0.1290 15 7 0.8726 -7.2546 0.1287 16 6 1.3184 -8.5224 0.2309 17 8 2.5078 -8.7414 0.3225 18 6 0.3392 -9.6678 0.2300 19 6 -0.1917 -9.8873 1.6233 20 6 0.4492 -10.7659 2.4767 21 6 -0.0349 -10.9636 3.7563 22 6 -1.1661 -10.2907 4.1789 23 6 -1.8100 -9.4161 3.3238 24 6 -1.3228 -9.2145 2.0459 25 6 1.0338 -10.9504 -0.2759 26 6 0.6009 -10.9938 -1.7695 27 6 -0.8253 -10.3955 -1.6766 28 8 -0.7434 -9.3811 -0.6629 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6840 -3.7141 0.8921 32 1 2.6853 -3.7149 -0.8878 33 1 0.8682 -4.9045 -2.0118 34 1 2.3903 -6.1466 1.0605 35 1 2.5090 -6.2485 -0.7125 36 1 -0.0786 -7.0795 0.0551 37 1 1.3302 -11.2953 2.1448 38 1 0.4679 -11.6472 4.4243 39 1 -1.5469 -10.4485 5.1772 40 1 -2.6940 -8.8907 3.6538 41 1 -1.8263 -8.5317 1.3775 42 1 2.1170 -10.8651 -0.1884 43 1 0.6708 -11.8262 0.2619 44 1 0.5740 -12.0175 -2.1429 45 1 1.2493 -10.3701 -2.3849 46 1 -1.5401 -11.1649 -1.3850 47 1 -1.1134 -9.9544 -2.6308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699069113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:27 Heat of formation + Delta-G solvation = -92.284169 kcal Electronic energy + Delta-G solvation = -28985.268714 eV Core-core repulsion = 24940.239149 eV Total energy + Delta-G solvation = -4045.029565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.79 seconds Orbital eigenvalues (eV) -41.22869 -39.05319 -38.52104 -37.50584 -34.45264 -33.99378 -32.85554 -32.28144 -31.27351 -31.02724 -29.30137 -28.33461 -25.59917 -24.02986 -23.21501 -22.74925 -21.77839 -21.60776 -21.38585 -19.91345 -18.25259 -17.60852 -17.14117 -16.61248 -16.14760 -16.00059 -15.71392 -15.64266 -15.00616 -14.85577 -14.51442 -14.43418 -14.16245 -13.88799 -13.69899 -13.58032 -13.42163 -12.98289 -12.93073 -12.60780 -12.32387 -12.29578 -12.17302 -11.84172 -11.63846 -11.57118 -11.23194 -11.13175 -10.95957 -10.79806 -10.72761 -10.57588 -10.20266 -9.83973 -9.74190 -9.47654 -9.14906 -9.07972 -8.95708 -8.89078 -6.93263 -5.75212 -3.04970 1.00334 1.17292 2.47042 3.05120 3.22879 3.44803 3.48859 3.50212 3.55957 4.09308 4.24180 4.48017 4.56441 4.63798 4.71450 4.73773 4.78826 4.81336 4.87785 4.90972 5.00102 5.21933 5.26013 5.30905 5.33845 5.39405 5.40119 5.56476 5.62317 5.64728 5.67401 5.74028 5.79203 5.81336 5.96742 6.20078 6.20510 6.21006 6.28126 6.39238 6.51795 6.56289 6.68650 6.72694 7.48322 7.68626 7.95769 8.12566 8.42896 9.54378 10.10997 10.46852 11.47091 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.002479 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.368431 B =11291.657724 C =12046.638875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.090 3.910 12 H 0.105 0.895 13 O -0.551 6.551 14 C 0.087 3.913 15 N -0.703 5.703 16 C 0.522 3.478 17 O -0.539 6.539 18 C 0.137 3.863 19 C -0.097 4.097 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.089 4.089 25 C -0.139 4.139 26 C -0.156 4.156 27 C 0.050 3.950 28 O -0.360 6.360 29 H 0.256 0.744 30 H 0.389 0.611 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.372 0.628 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -28.619 1.658 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.370 5.370 10 C -0.001 4.001 11 C 0.030 3.970 12 H 0.122 0.878 13 O -0.355 6.355 14 C -0.037 4.037 15 N -0.354 5.354 16 C 0.306 3.694 17 O -0.417 6.417 18 C 0.094 3.906 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.107 4.107 25 C -0.177 4.177 26 C -0.194 4.194 27 C -0.026 4.026 28 O -0.279 6.279 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.219 0.781 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.247 0.753 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.534 -28.363 2.145 28.557 hybrid contribution 0.346 0.852 -0.341 0.981 sum -2.188 -27.511 1.804 27.656 Atomic orbital electron populations 1.69669 1.05104 1.25792 1.57262 1.24759 0.95533 0.97714 1.02828 0.86253 0.78508 0.83466 0.77848 1.21255 1.21638 1.21240 1.19173 0.90964 0.84119 1.43294 0.91275 1.42231 1.06074 0.99378 1.89360 1.21196 0.93500 0.86597 0.98818 1.22388 0.94574 0.91729 0.88335 0.87752 1.86589 1.37426 1.96205 1.15323 1.22148 0.92309 0.86110 1.03127 1.45828 1.11670 1.05174 1.72709 1.20327 0.88811 0.84042 0.76217 1.90693 1.16213 1.84473 1.50314 1.20878 0.86524 0.94202 0.88951 1.19692 0.97079 0.98849 0.94145 1.21045 0.99582 0.97679 0.93826 1.21117 0.96846 1.00318 0.95833 1.21235 0.95751 0.96565 0.99680 1.21204 1.00331 0.98609 0.93799 1.21043 0.95267 0.98487 0.95907 1.23266 1.03396 0.95462 0.95568 1.23340 0.96747 1.02684 0.96626 1.23470 0.96675 0.90777 0.91650 1.88443 1.50163 1.48367 1.40897 0.93417 0.77703 0.95411 0.95924 0.78075 0.90415 0.91032 0.75342 0.85617 0.85825 0.85957 0.85655 0.85205 0.87711 0.89322 0.89327 0.90037 0.91691 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.62 5.55 -59.92 -0.33 -18.95 16 10 C 0.13 2.52 5.90 -4.04 -0.02 2.50 16 11 C 0.09 1.43 3.09 -26.73 -0.08 1.35 16 12 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 13 O -0.55 -8.98 13.03 -35.23 -0.46 -9.44 16 14 C 0.09 1.22 5.34 -4.04 -0.02 1.20 16 15 N -0.70 -9.26 5.36 -60.30 -0.32 -9.58 16 16 C 0.52 7.11 6.73 -10.99 -0.07 7.04 16 17 O -0.54 -8.74 15.56 5.55 0.09 -8.65 16 18 C 0.14 1.50 0.98 -92.20 -0.09 1.41 16 19 C -0.10 -1.05 4.80 -104.62 -0.50 -1.55 16 20 C -0.10 -1.02 8.75 -39.58 -0.35 -1.36 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.11 -0.99 10.05 -39.58 -0.40 -1.38 16 23 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 24 C -0.09 -0.94 9.36 -39.59 -0.37 -1.31 16 25 C -0.14 -1.24 5.00 -24.64 -0.12 -1.37 16 26 C -0.16 -1.15 7.18 -24.34 -0.17 -1.32 16 27 C 0.05 0.39 7.77 38.18 0.30 0.69 16 28 O -0.36 -3.81 9.10 -35.23 -0.32 -4.13 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.39 10.66 7.67 -40.82 -0.31 10.35 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.37 5.06 9.05 45.56 0.41 5.47 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.41 5.21 7.84 -40.82 -0.32 4.89 16 37 H 0.13 1.09 6.82 -52.48 -0.36 0.73 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 1.33 7.54 -52.48 -0.40 0.94 16 42 H 0.10 1.06 6.76 -51.93 -0.35 0.71 16 43 H 0.09 0.66 6.85 -51.93 -0.36 0.30 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 389.19 15.07 5.87 5.87 Total: -1.00 -34.19 389.19 -9.04 -43.23 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -6.30 Total: 16.58 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.95 Total: -4.67 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.07 Total: -56.38 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.69 Total: -22.22 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.19 -9.04 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699069113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.058 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.79 seconds