Wall clock time and date at job start Tue Mar 31 2020 22:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47016 * 239.99796 * 3 2 1 5 5 H 1.48495 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46838 * 120.00095 * 3 2 1 7 7 C 1.38808 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00370 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00315 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47006 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47653 * 304.99694 * 11 10 9 13 13 O 1.42898 * 109.47217 * 65.00196 * 11 10 9 14 14 C 1.53005 * 109.47106 * 184.99999 * 11 10 9 15 15 N 1.46495 * 109.47307 * 180.02562 * 14 11 10 16 16 C 1.34776 * 120.00510 * 179.97438 * 15 14 11 17 17 O 1.21287 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.50691 * 120.00424 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.82346 * 275.56688 * 18 16 15 20 20 C 1.38236 * 119.99926 * 269.16018 * 19 18 16 21 21 C 1.38234 * 120.00064 * 179.76603 * 20 19 18 22 22 C 1.38240 * 119.99661 * 0.50794 * 21 20 19 23 23 C 1.38228 * 120.00173 * 359.74466 * 22 21 20 24 24 C 1.38228 * 120.00257 * 89.43365 * 19 18 16 25 25 C 1.54383 * 109.83304 * 154.58616 * 18 16 15 26 26 C 1.55566 * 102.27674 * 261.84122 * 25 18 16 27 27 C 1.54944 * 100.82489 * 325.88222 * 26 25 18 28 28 O 1.43235 * 109.83446 * 36.45273 * 18 16 15 29 29 H 0.97002 * 119.99626 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99903 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47224 * 59.99796 * 10 9 7 32 32 H 1.08994 * 109.47001 * 299.99308 * 10 9 7 33 33 H 0.96697 * 114.00376 * 59.99833 * 13 11 10 34 34 H 1.08993 * 109.47347 * 60.00139 * 14 11 10 35 35 H 1.09004 * 109.46931 * 300.00235 * 14 11 10 36 36 H 0.97003 * 120.00143 * 359.97438 * 15 14 11 37 37 H 1.08006 * 120.00140 * 359.97438 * 20 19 18 38 38 H 1.07998 * 120.00439 * 180.23178 * 21 20 19 39 39 H 1.08003 * 119.99688 * 179.73065 * 22 21 20 40 40 H 1.07999 * 120.00423 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.99756 * 0.02562 * 24 19 18 42 42 H 1.09007 * 110.84628 * 20.03551 * 25 18 16 43 43 H 1.09002 * 110.85103 * 143.44492 * 25 18 16 44 44 H 1.08997 * 111.22347 * 207.97660 * 26 25 18 45 45 H 1.09003 * 111.13190 * 83.74257 * 26 25 18 46 46 H 1.09002 * 110.30953 * 277.47426 * 27 26 25 47 47 H 1.09000 * 110.30834 * 155.40499 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0017 11 6 1.0638 -4.8196 0.0021 12 1 0.3793 -4.7123 0.8435 13 8 0.3220 -4.8125 -1.2193 14 6 1.8245 -6.1411 0.1290 15 7 0.8726 -7.2546 0.1287 16 6 1.3184 -8.5224 0.2309 17 8 2.5078 -8.7414 0.3225 18 6 0.3392 -9.6678 0.2300 19 6 -0.1917 -9.8873 1.6233 20 6 0.4492 -10.7659 2.4767 21 6 -0.0349 -10.9636 3.7563 22 6 -1.1661 -10.2907 4.1789 23 6 -1.8100 -9.4161 3.3238 24 6 -1.3228 -9.2145 2.0459 25 6 1.0338 -10.9504 -0.2759 26 6 0.6009 -10.9938 -1.7695 27 6 -0.8253 -10.3955 -1.6766 28 8 -0.7434 -9.3811 -0.6629 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6840 -3.7141 0.8921 32 1 2.6853 -3.7149 -0.8878 33 1 0.8682 -4.9045 -2.0118 34 1 2.3903 -6.1466 1.0605 35 1 2.5090 -6.2485 -0.7125 36 1 -0.0786 -7.0795 0.0551 37 1 1.3302 -11.2953 2.1448 38 1 0.4679 -11.6472 4.4243 39 1 -1.5469 -10.4485 5.1772 40 1 -2.6940 -8.8907 3.6538 41 1 -1.8263 -8.5317 1.3775 42 1 2.1170 -10.8651 -0.1884 43 1 0.6708 -11.8262 0.2619 44 1 0.5740 -12.0175 -2.1429 45 1 1.2493 -10.3701 -2.3849 46 1 -1.5401 -11.1649 -1.3850 47 1 -1.1134 -9.9544 -2.6308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699069113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:09 Heat of formation + Delta-G solvation = -117.898016 kcal Electronic energy + Delta-G solvation = -28986.379413 eV Core-core repulsion = 24940.239149 eV Total energy + Delta-G solvation = -4046.140265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 21.01 seconds Orbital eigenvalues (eV) -42.07804 -40.02937 -39.31713 -38.79893 -36.12296 -35.39858 -33.60684 -33.26397 -32.91550 -31.71799 -30.71555 -29.21263 -27.17590 -25.12482 -24.26118 -23.83948 -22.85582 -22.72651 -22.28551 -20.87495 -19.36082 -19.02780 -18.34367 -17.83899 -17.23178 -16.89693 -16.72909 -16.59939 -16.41654 -15.85911 -15.70423 -15.57872 -15.32926 -14.95691 -14.90125 -14.64909 -14.41548 -14.23306 -14.08413 -13.82633 -13.64481 -13.26302 -13.03944 -12.97421 -12.80709 -12.72529 -12.31046 -12.25317 -12.21390 -12.01203 -11.92626 -11.82892 -11.82464 -11.53997 -11.04738 -10.96468 -10.52574 -10.20394 -9.85538 -9.72860 -9.02988 -7.95561 -5.25666 0.27488 0.46282 1.43105 1.46896 1.50296 1.56527 2.02072 2.50243 2.55408 2.82624 3.34489 3.40515 3.43955 3.52615 3.54725 3.68302 3.96407 4.00974 4.05154 4.09787 4.15245 4.17314 4.25716 4.32781 4.38179 4.56651 4.57924 4.63721 4.65256 4.70361 4.77854 4.86296 4.90348 4.95331 4.99846 5.10581 5.14077 5.17329 5.29012 5.46674 5.50197 5.51967 5.59017 5.81361 6.04604 6.25094 6.42140 6.76588 7.05422 7.32141 8.06664 8.30328 9.27501 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.002479 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.368431 B =11291.657724 C =12046.638875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.124 3.876 11 C 0.109 3.891 12 H 0.097 0.903 13 O -0.561 6.561 14 C 0.100 3.900 15 N -0.700 5.700 16 C 0.518 3.482 17 O -0.569 6.569 18 C 0.142 3.858 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.105 4.105 25 C -0.138 4.138 26 C -0.150 4.150 27 C 0.043 3.957 28 O -0.375 6.375 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.385 0.615 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.413 0.587 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 -30.050 1.930 30.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.003 4.003 11 C 0.049 3.951 12 H 0.114 0.886 13 O -0.368 6.368 14 C -0.025 4.025 15 N -0.350 5.350 16 C 0.303 3.697 17 O -0.449 6.449 18 C 0.099 3.901 19 C -0.112 4.112 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.176 4.176 26 C -0.188 4.188 27 C -0.032 4.032 28 O -0.294 6.294 29 H 0.061 0.939 30 H 0.208 0.792 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.250 0.750 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.133 0.867 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.099 -29.831 2.402 30.001 hybrid contribution 0.224 1.219 -0.418 1.308 sum -1.875 -28.612 1.983 28.742 Atomic orbital electron populations 1.69834 1.06686 1.26228 1.59076 1.25619 0.96420 1.01255 1.03453 0.85179 0.77177 0.78941 0.78244 1.20295 1.22075 1.20300 1.19611 0.91526 0.85314 1.41827 0.90552 1.42415 1.05722 1.00752 1.89417 1.21386 0.94124 0.85651 0.99153 1.22065 0.93489 0.91352 0.88167 0.88564 1.86568 1.38084 1.96186 1.15931 1.21911 0.92062 0.85321 1.03201 1.45800 1.11621 1.05077 1.72517 1.20893 0.88999 0.84548 0.75213 1.90670 1.17599 1.84950 1.51652 1.20794 0.86235 0.93549 0.89513 1.19779 0.97539 0.99662 0.94261 1.21247 0.99887 0.97764 0.94321 1.21451 0.96835 1.00372 0.95716 1.21570 0.95495 0.95822 1.00588 1.21463 1.00930 0.98929 0.93526 1.21130 0.95686 0.98906 0.96576 1.23279 1.02339 0.95111 0.96828 1.23342 0.96008 1.04013 0.95404 1.23690 0.97325 0.90762 0.91441 1.88426 1.49915 1.49571 1.41476 0.93936 0.79158 0.94888 0.94962 0.76651 0.90661 0.90551 0.75012 0.84878 0.83510 0.83606 0.84281 0.85740 0.89109 0.87676 0.86705 0.91113 0.90271 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -38.13 5.55 -343.47 -1.91 -40.03 16 10 C 0.12 4.85 5.90 86.38 0.51 5.36 16 11 C 0.11 3.45 3.09 30.60 0.09 3.55 16 12 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 13 O -0.56 -18.07 13.03 -148.98 -1.94 -20.01 16 14 C 0.10 2.73 5.34 86.38 0.46 3.19 16 15 N -0.70 -18.32 5.36 -463.07 -2.48 -20.80 16 16 C 0.52 14.06 6.73 87.65 0.59 14.65 16 17 O -0.57 -18.48 15.56 -3.05 -0.05 -18.53 16 18 C 0.14 3.04 0.98 -11.82 -0.01 3.02 16 19 C -0.11 -2.36 4.80 -19.87 -0.10 -2.45 16 20 C -0.11 -2.12 8.75 22.27 0.19 -1.92 16 21 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 22 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 23 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 24 C -0.10 -2.18 9.36 22.27 0.21 -1.97 16 25 C -0.14 -2.33 5.00 31.95 0.16 -2.17 16 26 C -0.15 -1.98 7.18 32.14 0.23 -1.75 16 27 C 0.04 0.62 7.77 72.65 0.56 1.18 16 28 O -0.37 -7.71 9.10 -148.98 -1.36 -9.07 16 29 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.38 20.99 7.67 -92.70 -0.71 20.28 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.38 10.14 9.05 -74.06 -0.67 9.47 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.41 10.48 7.84 -92.71 -0.73 9.75 16 37 H 0.13 2.17 6.82 -2.91 -0.02 2.15 16 38 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.12 2.61 7.54 -2.91 -0.02 2.58 16 42 H 0.09 1.81 6.76 -2.38 -0.02 1.80 16 43 H 0.10 1.39 6.85 -2.39 -0.02 1.38 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -72.92 389.19 -1.64 -74.56 By element: Atomic # 1 Polarization: 48.44 SS G_CDS: -1.10 Total: 47.34 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.88 Total: -2.00 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -4.11 Total: -120.81 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -3.34 Total: -47.61 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -72.92 -1.64 -74.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699069113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.342 kcal (2) G-P(sol) polarization free energy of solvation -72.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.01 seconds