Wall clock time and date at job start Tue Mar 31 2020 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00126 * 2 1 4 4 H 1.48491 * 109.47209 * 270.00051 * 3 2 1 5 5 H 1.48501 * 109.47027 * 30.00350 * 3 2 1 6 6 H 1.48499 * 109.47183 * 149.99540 * 3 2 1 7 7 C 1.38815 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99814 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99817 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47134 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.46965 * 59.99957 * 11 10 9 13 13 O 1.42902 * 109.46897 * 299.99802 * 11 10 9 14 14 C 1.53001 * 109.47145 * 180.02562 * 11 10 9 15 15 N 1.46501 * 109.46986 * 185.00010 * 14 11 10 16 16 C 1.34775 * 119.99835 * 179.97438 * 15 14 11 17 17 O 1.21279 * 120.00005 * 0.02562 * 16 15 14 18 18 C 1.50710 * 119.99633 * 179.97438 * 16 15 14 19 19 C 1.50693 * 109.89541 * 275.52141 * 18 16 15 20 20 C 1.38238 * 120.00152 * 269.21150 * 19 18 16 21 21 C 1.38232 * 120.00126 * 179.77056 * 20 19 18 22 22 C 1.38244 * 120.00035 * 0.49959 * 21 20 19 23 23 C 1.38234 * 119.99703 * 359.75029 * 22 21 20 24 24 C 1.38233 * 120.00338 * 359.97438 * 23 22 21 25 25 C 1.54380 * 109.82860 * 154.58923 * 18 16 15 26 26 C 1.55305 * 102.25481 * 261.84348 * 25 18 16 27 27 C 1.54944 * 100.93982 * 325.86824 * 26 25 18 28 28 O 1.43236 * 109.82987 * 36.45753 * 18 16 15 29 29 H 0.96994 * 119.99495 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99737 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47555 * 60.00014 * 10 9 7 32 32 H 1.09003 * 109.47331 * 300.00138 * 10 9 7 33 33 H 0.96702 * 114.00336 * 300.00192 * 13 11 10 34 34 H 1.08996 * 109.47053 * 64.99998 * 14 11 10 35 35 H 1.08999 * 109.46638 * 304.99682 * 14 11 10 36 36 H 0.97001 * 120.00268 * 359.97438 * 15 14 11 37 37 H 1.07996 * 119.99888 * 359.97438 * 20 19 18 38 38 H 1.08002 * 120.00202 * 180.22339 * 21 20 19 39 39 H 1.07997 * 119.99949 * 179.72538 * 22 21 20 40 40 H 1.07999 * 119.99737 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.00488 * 179.97438 * 24 23 22 42 42 H 1.08995 * 110.84695 * 143.64911 * 25 18 16 43 43 H 1.09003 * 111.02133 * 20.11368 * 25 18 16 44 44 H 1.08995 * 111.12453 * 207.94796 * 26 25 18 45 45 H 1.09003 * 111.12594 * 83.78484 * 26 25 18 46 46 H 1.08996 * 110.30897 * 277.53109 * 27 26 25 47 47 H 1.08999 * 110.39571 * 155.40414 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1914 0.0000 12 1 5.8797 -1.6198 0.8899 13 8 5.9616 -1.4421 -1.1668 14 6 6.3814 -3.5164 -0.0007 15 7 7.8172 -3.2514 0.1197 16 6 8.6921 -4.2763 0.1412 17 8 8.2908 -5.4180 0.0604 18 6 10.1692 -4.0036 0.2645 19 6 10.7527 -3.7158 -1.0948 20 6 11.2629 -4.7475 -1.8605 21 6 11.7939 -4.4841 -3.1093 22 6 11.8241 -3.1876 -3.5882 23 6 11.3186 -2.1553 -2.8203 24 6 10.7825 -2.4194 -1.5739 25 6 10.8767 -5.2247 0.8903 26 6 10.9961 -4.8080 2.3816 27 6 11.2076 -3.2792 2.2437 28 8 10.3861 -2.8856 1.1331 29 1 -0.4849 0.8400 0.0004 30 1 3.8646 -0.3621 0.0004 31 1 3.8492 -3.0423 -0.8902 32 1 3.8484 -3.0427 0.8897 33 1 5.7548 -1.8909 -1.9980 34 1 6.1868 -4.0478 -0.9322 35 1 6.0526 -4.1261 0.8410 36 1 8.1382 -2.3383 0.1840 37 1 11.2437 -5.7597 -1.4845 38 1 12.1892 -5.2906 -3.7091 39 1 12.2430 -2.9813 -4.5620 40 1 11.3426 -1.1424 -3.1942 41 1 10.3879 -1.6128 -0.9737 42 1 11.8622 -5.3707 0.4482 43 1 10.2697 -6.1241 0.7862 44 1 11.8559 -5.2825 2.8545 45 1 10.0784 -5.0300 2.9263 46 1 12.2548 -3.0594 2.0362 47 1 10.8870 -2.7680 3.1514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699069115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:54 Heat of formation + Delta-G solvation = -88.815947 kcal Electronic energy + Delta-G solvation = -29097.469772 eV Core-core repulsion = 25052.590601 eV Total energy + Delta-G solvation = -4044.879172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29192 -39.11861 -38.59081 -37.65156 -34.58634 -34.13318 -32.91593 -32.34581 -31.45433 -31.07153 -29.61062 -28.47234 -25.83779 -24.06721 -23.24947 -22.56485 -21.78420 -21.65781 -21.42469 -19.99608 -18.33510 -17.70558 -17.66078 -16.65189 -16.21226 -16.02429 -15.90850 -15.68856 -15.04984 -14.86518 -14.63211 -14.47832 -14.24382 -13.87532 -13.74471 -13.71257 -13.48070 -13.21594 -12.97407 -12.64468 -12.40123 -12.35120 -12.22750 -11.98818 -11.70145 -11.61985 -11.29023 -11.27725 -11.17755 -10.86027 -10.83729 -10.72440 -10.17016 -9.91192 -9.68025 -9.54098 -9.19373 -9.15910 -9.00307 -8.92325 -7.25465 -5.77491 -3.13597 0.95858 1.13261 2.40893 2.97701 3.16610 3.40512 3.45589 3.47426 3.51268 4.04697 4.19174 4.42875 4.54147 4.59401 4.60636 4.67719 4.70603 4.74875 4.76301 4.83378 4.95545 5.15637 5.17393 5.25827 5.28909 5.34235 5.35884 5.46773 5.51486 5.58026 5.62845 5.68458 5.70351 5.75597 5.80072 5.86125 6.15213 6.16397 6.23965 6.30402 6.42117 6.49417 6.56236 6.68425 7.39831 7.79568 7.98792 8.04995 8.41179 9.20823 9.92768 10.12698 11.40605 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.002683 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.698684 B =10433.609246 C =11093.291846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.089 0.911 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.086 3.914 12 H 0.104 0.896 13 O -0.555 6.555 14 C 0.088 3.912 15 N -0.705 5.705 16 C 0.522 3.478 17 O -0.537 6.537 18 C 0.138 3.862 19 C -0.097 4.097 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.087 4.087 25 C -0.139 4.139 26 C -0.157 4.157 27 C 0.050 3.950 28 O -0.362 6.362 29 H 0.260 0.740 30 H 0.367 0.633 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.376 0.624 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.409 0.591 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.929 -9.611 -0.739 32.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.003 3.997 11 C 0.026 3.974 12 H 0.122 0.878 13 O -0.361 6.361 14 C -0.036 4.036 15 N -0.356 5.356 16 C 0.307 3.693 17 O -0.414 6.414 18 C 0.095 3.905 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.105 4.105 25 C -0.177 4.177 26 C -0.195 4.195 27 C -0.026 4.026 28 O -0.281 6.281 29 H 0.070 0.930 30 H 0.200 0.800 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.223 0.777 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.245 0.755 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 30.484 -9.861 -0.375 32.041 hybrid contribution 0.492 1.046 -0.326 1.201 sum 30.975 -8.815 -0.700 32.213 Atomic orbital electron populations 1.69710 1.05143 1.25920 1.57357 1.24676 0.95250 0.97338 1.01808 0.86490 0.79122 0.84671 0.77896 1.20994 1.21804 1.20252 1.19044 0.80517 0.94774 1.43405 0.89271 1.42560 1.03929 1.02020 1.91052 1.21167 0.88530 0.90299 0.99717 1.22436 0.94608 0.90767 0.89606 0.87778 1.86548 1.86006 1.47647 1.15863 1.22132 0.79774 0.98508 1.03192 1.45838 1.06641 1.10118 1.72965 1.20326 0.87505 0.85228 0.76277 1.90699 1.79104 1.21351 1.50290 1.20879 0.91979 0.88151 0.89509 1.19681 1.00870 0.94484 0.94756 1.21046 0.97711 0.98804 0.94550 1.21119 1.00252 0.96970 0.95778 1.21238 0.99211 0.93000 0.99757 1.21196 0.98801 0.99483 0.94465 1.21026 0.97838 0.96169 0.95495 1.23222 1.01683 0.98005 0.94785 1.23302 1.03622 0.95843 0.96687 1.23480 0.95140 0.94600 0.89366 1.88425 1.71088 1.32531 1.36043 0.93015 0.79999 0.95039 0.94512 0.77666 0.90831 0.90213 0.75481 0.85609 0.85809 0.85959 0.85704 0.85269 0.89313 0.87649 0.89289 0.90002 0.91647 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.89 22.59 27.74 -169.99 -4.71 17.88 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.68 6.52 56.52 0.37 -6.32 16 7 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.92 5.30 -59.91 -0.32 -18.23 16 10 C 0.13 2.44 5.92 -4.04 -0.02 2.42 16 11 C 0.09 1.26 3.09 -26.73 -0.08 1.18 16 12 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 13 O -0.56 -8.32 13.03 -35.23 -0.46 -8.78 16 14 C 0.09 1.15 5.31 -4.04 -0.02 1.13 16 15 N -0.70 -8.72 5.42 -60.29 -0.33 -9.05 16 16 C 0.52 6.80 6.74 -10.98 -0.07 6.73 16 17 O -0.54 -8.42 15.57 5.56 0.09 -8.34 16 18 C 0.14 1.43 0.98 -92.20 -0.09 1.34 16 19 C -0.10 -1.00 4.80 -104.62 -0.50 -1.51 16 20 C -0.10 -0.97 8.75 -39.58 -0.35 -1.32 16 21 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.11 -0.94 10.05 -39.58 -0.40 -1.33 16 23 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 24 C -0.09 -0.88 9.36 -39.58 -0.37 -1.25 16 25 C -0.14 -1.19 4.98 -24.79 -0.12 -1.31 16 26 C -0.16 -1.09 7.16 -24.48 -0.18 -1.27 16 27 C 0.05 0.37 7.78 38.18 0.30 0.67 16 28 O -0.36 -3.61 9.10 -35.23 -0.32 -3.94 16 29 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 30 H 0.37 8.75 5.41 -40.82 -0.22 8.53 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.38 4.70 9.05 45.56 0.41 5.12 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.41 4.80 7.97 -40.82 -0.33 4.47 16 37 H 0.13 1.04 6.82 -52.49 -0.36 0.68 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.13 1.27 7.54 -52.49 -0.40 0.87 16 42 H 0.09 0.62 6.86 -51.93 -0.36 0.27 16 43 H 0.11 1.03 6.78 -51.93 -0.35 0.67 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -34.94 386.07 -8.68 -43.62 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -6.26 Total: 14.48 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.96 Total: -4.62 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.13 Total: -56.12 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.69 Total: -21.05 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.94 -8.68 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699069115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.197 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds