Wall clock time and date at job start Tue Mar 31 2020 22:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00126 * 2 1 4 4 H 1.48491 * 109.47209 * 270.00051 * 3 2 1 5 5 H 1.48501 * 109.47027 * 30.00350 * 3 2 1 6 6 H 1.48499 * 109.47183 * 149.99540 * 3 2 1 7 7 C 1.38815 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99814 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99817 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47134 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.46965 * 59.99957 * 11 10 9 13 13 O 1.42902 * 109.46897 * 299.99802 * 11 10 9 14 14 C 1.53001 * 109.47145 * 180.02562 * 11 10 9 15 15 N 1.46501 * 109.46986 * 185.00010 * 14 11 10 16 16 C 1.34775 * 119.99835 * 179.97438 * 15 14 11 17 17 O 1.21279 * 120.00005 * 0.02562 * 16 15 14 18 18 C 1.50710 * 119.99633 * 179.97438 * 16 15 14 19 19 C 1.50693 * 109.89541 * 275.52141 * 18 16 15 20 20 C 1.38238 * 120.00152 * 269.21150 * 19 18 16 21 21 C 1.38232 * 120.00126 * 179.77056 * 20 19 18 22 22 C 1.38244 * 120.00035 * 0.49959 * 21 20 19 23 23 C 1.38234 * 119.99703 * 359.75029 * 22 21 20 24 24 C 1.38233 * 120.00338 * 359.97438 * 23 22 21 25 25 C 1.54380 * 109.82860 * 154.58923 * 18 16 15 26 26 C 1.55305 * 102.25481 * 261.84348 * 25 18 16 27 27 C 1.54944 * 100.93982 * 325.86824 * 26 25 18 28 28 O 1.43236 * 109.82987 * 36.45753 * 18 16 15 29 29 H 0.96994 * 119.99495 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99737 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47555 * 60.00014 * 10 9 7 32 32 H 1.09003 * 109.47331 * 300.00138 * 10 9 7 33 33 H 0.96702 * 114.00336 * 300.00192 * 13 11 10 34 34 H 1.08996 * 109.47053 * 64.99998 * 14 11 10 35 35 H 1.08999 * 109.46638 * 304.99682 * 14 11 10 36 36 H 0.97001 * 120.00268 * 359.97438 * 15 14 11 37 37 H 1.07996 * 119.99888 * 359.97438 * 20 19 18 38 38 H 1.08002 * 120.00202 * 180.22339 * 21 20 19 39 39 H 1.07997 * 119.99949 * 179.72538 * 22 21 20 40 40 H 1.07999 * 119.99737 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.00488 * 179.97438 * 24 23 22 42 42 H 1.08995 * 110.84695 * 143.64911 * 25 18 16 43 43 H 1.09003 * 111.02133 * 20.11368 * 25 18 16 44 44 H 1.08995 * 111.12453 * 207.94796 * 26 25 18 45 45 H 1.09003 * 111.12594 * 83.78484 * 26 25 18 46 46 H 1.08996 * 110.30897 * 277.53109 * 27 26 25 47 47 H 1.08999 * 110.39571 * 155.40414 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3797 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6164 -2.1914 0.0000 12 1 5.8797 -1.6198 0.8899 13 8 5.9616 -1.4421 -1.1668 14 6 6.3814 -3.5164 -0.0007 15 7 7.8172 -3.2514 0.1197 16 6 8.6921 -4.2763 0.1412 17 8 8.2908 -5.4180 0.0604 18 6 10.1692 -4.0036 0.2645 19 6 10.7527 -3.7158 -1.0948 20 6 11.2629 -4.7475 -1.8605 21 6 11.7939 -4.4841 -3.1093 22 6 11.8241 -3.1876 -3.5882 23 6 11.3186 -2.1553 -2.8203 24 6 10.7825 -2.4194 -1.5739 25 6 10.8767 -5.2247 0.8903 26 6 10.9961 -4.8080 2.3816 27 6 11.2076 -3.2792 2.2437 28 8 10.3861 -2.8856 1.1331 29 1 -0.4849 0.8400 0.0004 30 1 3.8646 -0.3621 0.0004 31 1 3.8492 -3.0423 -0.8902 32 1 3.8484 -3.0427 0.8897 33 1 5.7548 -1.8909 -1.9980 34 1 6.1868 -4.0478 -0.9322 35 1 6.0526 -4.1261 0.8410 36 1 8.1382 -2.3383 0.1840 37 1 11.2437 -5.7597 -1.4845 38 1 12.1892 -5.2906 -3.7091 39 1 12.2430 -2.9813 -4.5620 40 1 11.3426 -1.1424 -3.1942 41 1 10.3879 -1.6128 -0.9737 42 1 11.8622 -5.3707 0.4482 43 1 10.2697 -6.1241 0.7862 44 1 11.8559 -5.2825 2.8545 45 1 10.0784 -5.0300 2.9263 46 1 12.2548 -3.0594 2.0362 47 1 10.8870 -2.7680 3.1514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699069115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:53 Heat of formation + Delta-G solvation = -115.544844 kcal Electronic energy + Delta-G solvation = -29098.628824 eV Core-core repulsion = 25052.590601 eV Total energy + Delta-G solvation = -4046.038224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.17 seconds Orbital eigenvalues (eV) -42.08834 -40.04244 -39.33221 -38.85307 -36.23503 -35.43257 -33.61832 -33.51024 -32.97222 -31.71565 -30.98196 -29.26369 -27.30569 -24.99680 -24.08530 -23.81233 -22.90596 -22.73886 -22.28561 -20.91207 -19.82722 -19.13531 -18.34786 -17.81109 -17.25311 -16.86472 -16.81073 -16.57822 -16.50752 -15.79239 -15.69959 -15.53964 -15.45419 -15.09262 -14.87727 -14.67229 -14.43602 -14.28758 -14.13814 -13.93852 -13.64132 -13.38500 -13.21719 -13.04809 -12.82695 -12.81160 -12.33197 -12.26016 -12.25099 -11.93471 -11.91021 -11.85080 -11.82353 -11.55260 -11.08949 -11.02461 -10.53528 -10.21284 -9.84890 -9.72393 -9.33769 -8.05105 -5.39005 0.27783 0.47003 1.38973 1.41735 1.42967 1.49163 2.00952 2.47370 2.48654 2.82736 3.25149 3.29828 3.40734 3.49957 3.52569 3.65360 3.94890 3.99426 4.04470 4.05487 4.09143 4.15047 4.18923 4.25444 4.32826 4.55213 4.57694 4.63982 4.65489 4.69981 4.76979 4.85894 4.88970 4.94610 5.00088 5.10561 5.13430 5.13878 5.28805 5.50044 5.52536 5.59621 5.71876 5.79960 6.05001 6.18511 6.41390 6.71541 7.05404 7.05764 7.80851 8.00481 9.16231 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.002683 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.698684 B =10433.609246 C =11093.291846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.959 3.041 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.254 1.254 7 C -0.238 4.238 8 H 0.057 0.943 9 N -0.752 5.752 10 C 0.125 3.875 11 C 0.107 3.893 12 H 0.108 0.892 13 O -0.562 6.562 14 C 0.098 3.902 15 N -0.700 5.700 16 C 0.518 3.482 17 O -0.569 6.569 18 C 0.143 3.857 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.130 4.130 24 C -0.101 4.101 25 C -0.139 4.139 26 C -0.152 4.152 27 C 0.044 3.956 28 O -0.375 6.375 29 H 0.259 0.741 30 H 0.369 0.631 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.387 0.613 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.052 -9.072 -1.040 35.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.369 4.369 8 H 0.075 0.925 9 N -0.399 5.399 10 C -0.002 4.002 11 C 0.047 3.953 12 H 0.125 0.875 13 O -0.369 6.369 14 C -0.027 4.027 15 N -0.350 5.350 16 C 0.304 3.696 17 O -0.448 6.448 18 C 0.100 3.900 19 C -0.112 4.112 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.147 4.147 24 C -0.119 4.119 25 C -0.176 4.176 26 C -0.189 4.189 27 C -0.032 4.032 28 O -0.294 6.294 29 H 0.068 0.932 30 H 0.203 0.797 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.236 0.764 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.251 0.749 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.144 0.856 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.132 0.868 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 33.663 -9.338 -0.676 34.941 hybrid contribution -0.479 0.766 -0.266 0.942 sum 33.184 -8.572 -0.942 34.286 Atomic orbital electron populations 1.69885 1.07138 1.26813 1.59489 1.25518 0.96129 1.01357 1.02438 0.85348 0.78438 0.79454 0.78126 1.20472 1.22120 1.17883 1.19041 0.82648 0.93552 1.41664 0.92471 1.42536 1.02359 1.04020 1.90938 1.21374 0.90831 0.88209 0.99773 1.22129 0.91827 0.91503 0.89872 0.87464 1.86527 1.85837 1.48105 1.16443 1.21922 0.80211 0.97346 1.03179 1.45790 1.06215 1.10394 1.72637 1.20877 0.88753 0.84679 0.75329 1.90678 1.79927 1.22519 1.51726 1.20783 0.90040 0.89080 0.90134 1.19760 1.01640 0.94925 0.94867 1.21237 0.97984 0.98952 0.95104 1.21440 0.99639 0.97847 0.95538 1.21566 0.98582 0.92741 1.00585 1.21454 0.98536 1.00584 0.94176 1.21114 0.98584 0.96086 0.96156 1.23232 1.01900 0.96616 0.95890 1.23305 1.04177 0.95802 0.95637 1.23694 0.95624 0.94854 0.89000 1.88405 1.71661 1.32606 1.36718 0.93226 0.79705 0.94642 0.94354 0.76370 0.90838 0.90376 0.74943 0.85042 0.83658 0.83677 0.84262 0.85623 0.87749 0.89157 0.86803 0.91136 0.90251 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.63 13.97 21.65 0.30 -63.33 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 46.40 27.74 68.60 1.90 48.30 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 7 C -0.24 -13.75 10.47 84.03 0.88 -12.87 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 9 N -0.75 -35.20 5.30 -343.44 -1.82 -37.02 16 10 C 0.13 4.54 5.92 86.38 0.51 5.06 16 11 C 0.11 2.96 3.09 30.60 0.09 3.05 16 12 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 13 O -0.56 -15.67 13.03 -148.98 -1.94 -17.61 16 14 C 0.10 2.45 5.31 86.38 0.46 2.91 16 15 N -0.70 -16.67 5.42 -463.06 -2.51 -19.18 16 16 C 0.52 13.24 6.74 87.66 0.59 13.83 16 17 O -0.57 -17.84 15.57 -3.03 -0.05 -17.89 16 18 C 0.14 2.84 0.98 -11.82 -0.01 2.83 16 19 C -0.11 -2.18 4.80 -19.87 -0.10 -2.28 16 20 C -0.11 -2.01 8.75 22.27 0.19 -1.81 16 21 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 22 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 24 C -0.10 -1.93 9.36 22.27 0.21 -1.72 16 25 C -0.14 -2.22 4.98 31.85 0.16 -2.06 16 26 C -0.15 -1.87 7.16 32.05 0.23 -1.64 16 27 C 0.04 0.56 7.78 72.65 0.56 1.13 16 28 O -0.37 -7.03 9.10 -148.98 -1.36 -8.39 16 29 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.37 16.83 5.41 -92.71 -0.50 16.33 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.39 8.92 9.05 -74.06 -0.67 8.25 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.41 9.20 7.97 -92.71 -0.74 8.46 16 37 H 0.13 2.04 6.82 -2.91 -0.02 2.02 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 41 H 0.13 2.37 7.54 -2.91 -0.02 2.35 16 42 H 0.10 1.31 6.86 -2.39 -0.02 1.29 16 43 H 0.09 1.74 6.78 -2.39 -0.02 1.72 16 44 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -75.41 386.07 -1.51 -76.92 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.96 Total: 39.98 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 4.92 Total: -1.78 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -4.03 Total: -119.52 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -3.34 Total: -43.89 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -75.41 -1.51 -76.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699069115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.629 kcal (2) G-P(sol) polarization free energy of solvation -75.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.17 seconds