Wall clock time and date at job start Tue Mar 31 2020 22:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48500 * 109.47016 * 239.99627 * 3 2 1 5 5 H 1.48497 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46746 * 120.00245 * 3 2 1 7 7 C 1.38812 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99432 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46831 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47240 * 59.99627 * 11 10 9 13 13 O 1.42907 * 109.47034 * 300.00324 * 11 10 9 14 14 C 1.52996 * 109.46969 * 180.02562 * 11 10 9 15 15 N 1.46500 * 109.46808 * 184.99986 * 14 11 10 16 16 C 1.34776 * 120.00235 * 180.02562 * 15 14 11 17 17 O 1.21286 * 119.99600 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00697 * 180.02562 * 16 15 14 19 19 C 1.50705 * 109.87309 * 83.98978 * 18 16 15 20 20 C 1.38230 * 120.00055 * 90.73248 * 19 18 16 21 21 C 1.38231 * 120.00351 * 179.78998 * 20 19 18 22 22 C 1.38244 * 119.99456 * 0.44434 * 21 20 19 23 23 C 1.38226 * 120.00027 * 359.81364 * 22 21 20 24 24 C 1.38233 * 119.99847 * 271.01192 * 19 18 16 25 25 C 1.54096 * 109.88310 * 204.99831 * 18 16 15 26 26 C 1.54817 * 104.18822 * 117.39262 * 25 18 16 27 27 C 1.54991 * 102.09285 * 339.11830 * 26 25 18 28 28 O 1.43749 * 109.87670 * 322.83333 * 18 16 15 29 29 H 0.96999 * 119.99550 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00265 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46970 * 60.00255 * 10 9 7 32 32 H 1.08999 * 109.47086 * 299.99721 * 10 9 7 33 33 H 0.96698 * 113.99588 * 299.99438 * 13 11 10 34 34 H 1.09003 * 109.47106 * 65.00445 * 14 11 10 35 35 H 1.08996 * 109.47237 * 304.99592 * 14 11 10 36 36 H 0.97006 * 120.00227 * 359.97438 * 15 14 11 37 37 H 1.08002 * 119.99766 * 0.02562 * 20 19 18 38 38 H 1.07993 * 120.00550 * 180.27808 * 21 20 19 39 39 H 1.08003 * 119.99653 * 179.83166 * 22 21 20 40 40 H 1.08000 * 120.00052 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00274 * 359.97438 * 24 19 18 42 42 H 1.09004 * 110.48850 * 358.71528 * 25 18 16 43 43 H 1.08996 * 110.48992 * 236.07109 * 25 18 16 44 44 H 1.08996 * 110.90849 * 97.31959 * 26 25 18 45 45 H 1.09004 * 110.90250 * 220.92384 * 26 25 18 46 46 H 1.09000 * 110.62043 * 155.51925 * 27 26 25 47 47 H 1.08998 * 110.62229 * 278.52472 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.4368 -4.7614 -0.8928 13 8 0.2427 -4.7447 1.1640 14 6 1.8289 -6.1447 -0.0037 15 7 0.8814 -7.2555 -0.1244 16 6 1.3313 -8.5258 -0.1459 17 8 2.5207 -8.7492 -0.0657 18 6 0.3568 -9.6684 -0.2707 19 6 0.0203 -9.8986 -1.7215 20 6 0.7697 -10.7845 -2.4727 21 6 0.4584 -10.9989 -3.8024 22 6 -0.5968 -10.3204 -4.3832 23 6 -1.3428 -9.4306 -3.6334 24 6 -1.0342 -9.2195 -2.3026 25 6 0.9680 -10.9469 0.3346 26 6 0.0252 -11.2980 1.5113 27 6 -0.6682 -9.9397 1.7881 28 8 -0.8391 -9.3741 0.4707 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6847 -3.7153 0.8872 32 1 2.6847 -3.7137 -0.8928 33 1 0.7351 -4.7907 1.9950 34 1 2.3866 -6.2426 0.9277 35 1 2.5209 -6.1643 -0.8455 36 1 -0.0700 -7.0768 -0.1882 37 1 1.5961 -11.3120 -2.0198 38 1 1.0410 -11.6944 -4.3881 39 1 -0.8384 -10.4859 -5.4228 40 1 -2.1669 -8.9002 -4.0873 41 1 -1.6172 -8.5242 -1.7168 42 1 1.9767 -10.7521 0.6990 43 1 0.9759 -11.7512 -0.4010 44 1 -0.7028 -12.0530 1.2145 45 1 0.5942 -11.6285 2.3803 46 1 -1.6347 -10.0929 2.2683 47 1 -0.0312 -9.3013 2.4003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699069117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:31 Heat of formation + Delta-G solvation = -90.033999 kcal Electronic energy + Delta-G solvation = -29004.901551 eV Core-core repulsion = 24959.969561 eV Total energy + Delta-G solvation = -4044.931990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.27097 -39.06485 -38.50791 -37.50797 -34.48358 -33.99230 -32.91369 -32.26440 -31.27010 -31.03198 -29.27272 -28.26582 -25.67619 -24.14678 -23.20572 -22.76173 -22.05140 -21.43415 -21.24420 -19.91441 -18.02712 -17.73154 -17.14852 -16.72901 -16.28991 -15.98913 -15.83333 -15.34457 -15.08972 -14.96745 -14.50646 -14.43288 -14.11018 -14.01397 -13.62380 -13.59082 -13.37241 -13.02837 -12.96214 -12.60584 -12.34425 -12.31260 -12.10865 -11.85023 -11.60150 -11.52658 -11.17165 -11.09378 -10.96229 -10.86425 -10.80442 -10.59901 -10.20224 -9.88412 -9.77174 -9.49033 -9.15599 -9.10554 -8.95151 -8.89718 -6.93823 -5.75690 -3.05522 0.99408 1.16577 2.44807 3.00292 3.29126 3.44308 3.48416 3.49763 3.55182 4.13869 4.29692 4.45643 4.55808 4.60734 4.70542 4.73135 4.76727 4.80435 4.87252 4.89611 5.01618 5.22771 5.25102 5.29851 5.33011 5.38775 5.46223 5.55645 5.56890 5.61825 5.67575 5.72253 5.78051 5.80102 5.95097 6.14630 6.19992 6.20917 6.27561 6.35733 6.48662 6.51143 6.67584 6.71692 7.44343 7.68037 7.95072 8.09326 8.42486 9.54021 10.10654 10.46805 11.46546 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.002487 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.223577 B =11257.879418 C =12033.749050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.090 3.910 12 H 0.104 0.896 13 O -0.550 6.550 14 C 0.088 3.912 15 N -0.705 5.705 16 C 0.509 3.491 17 O -0.538 6.538 18 C 0.134 3.866 19 C -0.084 4.084 20 C -0.104 4.104 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.089 4.089 25 C -0.142 4.142 26 C -0.153 4.153 27 C 0.043 3.957 28 O -0.353 6.353 29 H 0.256 0.744 30 H 0.389 0.611 31 H 0.023 0.977 32 H 0.028 0.972 33 H 0.373 0.627 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.410 0.590 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 -28.179 -1.962 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.030 3.970 12 H 0.122 0.878 13 O -0.355 6.355 14 C -0.036 4.036 15 N -0.356 5.356 16 C 0.293 3.707 17 O -0.416 6.416 18 C 0.091 3.909 19 C -0.085 4.085 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.107 4.107 25 C -0.180 4.180 26 C -0.191 4.191 27 C -0.033 4.033 28 O -0.272 6.272 29 H 0.066 0.934 30 H 0.224 0.776 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.220 0.780 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.246 0.754 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.119 0.881 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.116 -28.011 -2.424 28.195 hybrid contribution 0.408 0.973 0.396 1.127 sum -1.708 -27.037 -2.028 27.167 Atomic orbital electron populations 1.69673 1.05098 1.25791 1.57230 1.24763 0.95534 0.97712 1.02819 0.86254 0.78508 0.83467 0.77850 1.21248 1.21633 1.21247 1.19171 0.90958 0.84118 1.43332 0.91286 1.42221 1.06129 0.99323 1.89358 1.21190 0.93500 0.86638 0.98841 1.22378 0.93269 0.91655 0.89716 0.87814 1.86591 1.36893 1.96401 1.15614 1.22162 0.92421 0.86113 1.02946 1.45862 1.11649 1.05151 1.72913 1.20689 0.89232 0.84355 0.76379 1.90691 1.16385 1.84453 1.50049 1.20915 0.85226 0.93663 0.91082 1.19350 0.97649 0.98805 0.92660 1.21058 0.99246 0.97607 0.94324 1.21111 0.97868 1.00263 0.94781 1.21239 0.95596 0.96443 0.99924 1.21202 1.00092 0.98534 0.94042 1.21038 0.96252 0.98535 0.94879 1.23112 1.01151 0.95457 0.98302 1.23157 0.98971 0.98313 0.98628 1.23675 1.01757 0.92890 0.84957 1.88931 1.35755 1.78033 1.24462 0.93416 0.77614 0.95971 0.95402 0.78035 0.91019 0.90402 0.75443 0.85427 0.85760 0.85911 0.85609 0.85229 0.88340 0.89098 0.90169 0.89729 0.88113 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.55 5.49 -59.91 -0.33 -18.88 16 10 C 0.13 2.50 5.92 -4.04 -0.02 2.47 16 11 C 0.09 1.42 3.09 -26.73 -0.08 1.34 16 12 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 13 O -0.55 -8.97 13.03 -35.23 -0.46 -9.43 16 14 C 0.09 1.21 5.31 -4.04 -0.02 1.19 16 15 N -0.70 -9.15 5.42 -60.30 -0.33 -9.47 16 16 C 0.51 6.88 6.66 -10.99 -0.07 6.80 16 17 O -0.54 -8.70 15.56 5.55 0.09 -8.62 16 18 C 0.13 1.47 0.90 -92.35 -0.08 1.39 16 19 C -0.08 -0.92 4.84 -104.62 -0.51 -1.42 16 20 C -0.10 -1.03 8.73 -39.59 -0.35 -1.38 16 21 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 22 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 24 C -0.09 -0.94 9.36 -39.58 -0.37 -1.31 16 25 C -0.14 -1.31 5.63 -25.20 -0.14 -1.45 16 26 C -0.15 -1.10 7.15 -24.72 -0.18 -1.27 16 27 C 0.04 0.36 7.66 38.21 0.29 0.65 16 28 O -0.35 -3.76 9.35 -35.23 -0.33 -4.09 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.39 10.66 7.54 -40.82 -0.31 10.35 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.37 5.09 9.04 45.56 0.41 5.50 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.41 5.09 7.99 -40.82 -0.33 4.76 16 37 H 0.13 1.11 6.45 -52.49 -0.34 0.77 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.13 1.33 7.56 -52.49 -0.40 0.93 16 42 H 0.10 1.02 6.72 -51.93 -0.35 0.67 16 43 H 0.09 0.72 5.78 -51.93 -0.30 0.42 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -34.15 388.35 -9.00 -43.16 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -6.23 Total: 16.59 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.97 Total: -4.87 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.07 Total: -56.13 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.70 Total: -22.14 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.15 -9.00 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699069117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.876 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds