Wall clock time and date at job start Tue Mar 31 2020 22:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48500 * 109.47016 * 239.99627 * 3 2 1 5 5 H 1.48497 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46746 * 120.00245 * 3 2 1 7 7 C 1.38812 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99432 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46831 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47240 * 59.99627 * 11 10 9 13 13 O 1.42907 * 109.47034 * 300.00324 * 11 10 9 14 14 C 1.52996 * 109.46969 * 180.02562 * 11 10 9 15 15 N 1.46500 * 109.46808 * 184.99986 * 14 11 10 16 16 C 1.34776 * 120.00235 * 180.02562 * 15 14 11 17 17 O 1.21286 * 119.99600 * 359.97438 * 16 15 14 18 18 C 1.50693 * 120.00697 * 180.02562 * 16 15 14 19 19 C 1.50705 * 109.87309 * 83.98978 * 18 16 15 20 20 C 1.38230 * 120.00055 * 90.73248 * 19 18 16 21 21 C 1.38231 * 120.00351 * 179.78998 * 20 19 18 22 22 C 1.38244 * 119.99456 * 0.44434 * 21 20 19 23 23 C 1.38226 * 120.00027 * 359.81364 * 22 21 20 24 24 C 1.38233 * 119.99847 * 271.01192 * 19 18 16 25 25 C 1.54096 * 109.88310 * 204.99831 * 18 16 15 26 26 C 1.54817 * 104.18822 * 117.39262 * 25 18 16 27 27 C 1.54991 * 102.09285 * 339.11830 * 26 25 18 28 28 O 1.43749 * 109.87670 * 322.83333 * 18 16 15 29 29 H 0.96999 * 119.99550 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00265 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46970 * 60.00255 * 10 9 7 32 32 H 1.08999 * 109.47086 * 299.99721 * 10 9 7 33 33 H 0.96698 * 113.99588 * 299.99438 * 13 11 10 34 34 H 1.09003 * 109.47106 * 65.00445 * 14 11 10 35 35 H 1.08996 * 109.47237 * 304.99592 * 14 11 10 36 36 H 0.97006 * 120.00227 * 359.97438 * 15 14 11 37 37 H 1.08002 * 119.99766 * 0.02562 * 20 19 18 38 38 H 1.07993 * 120.00550 * 180.27808 * 21 20 19 39 39 H 1.08003 * 119.99653 * 179.83166 * 22 21 20 40 40 H 1.08000 * 120.00052 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00274 * 359.97438 * 24 19 18 42 42 H 1.09004 * 110.48850 * 358.71528 * 25 18 16 43 43 H 1.08996 * 110.48992 * 236.07109 * 25 18 16 44 44 H 1.08996 * 110.90849 * 97.31959 * 26 25 18 45 45 H 1.09004 * 110.90250 * 220.92384 * 26 25 18 46 46 H 1.09000 * 110.62043 * 155.51925 * 27 26 25 47 47 H 1.08998 * 110.62229 * 278.52472 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.4368 -4.7614 -0.8928 13 8 0.2427 -4.7447 1.1640 14 6 1.8289 -6.1447 -0.0037 15 7 0.8814 -7.2555 -0.1244 16 6 1.3313 -8.5258 -0.1459 17 8 2.5207 -8.7492 -0.0657 18 6 0.3568 -9.6684 -0.2707 19 6 0.0203 -9.8986 -1.7215 20 6 0.7697 -10.7845 -2.4727 21 6 0.4584 -10.9989 -3.8024 22 6 -0.5968 -10.3204 -4.3832 23 6 -1.3428 -9.4306 -3.6334 24 6 -1.0342 -9.2195 -2.3026 25 6 0.9680 -10.9469 0.3346 26 6 0.0252 -11.2980 1.5113 27 6 -0.6682 -9.9397 1.7881 28 8 -0.8391 -9.3741 0.4707 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 2.6847 -3.7153 0.8872 32 1 2.6847 -3.7137 -0.8928 33 1 0.7351 -4.7907 1.9950 34 1 2.3866 -6.2426 0.9277 35 1 2.5209 -6.1643 -0.8455 36 1 -0.0700 -7.0768 -0.1882 37 1 1.5961 -11.3120 -2.0198 38 1 1.0410 -11.6944 -4.3881 39 1 -0.8384 -10.4859 -5.4228 40 1 -2.1669 -8.9002 -4.0873 41 1 -1.6172 -8.5242 -1.7168 42 1 1.9767 -10.7521 0.6990 43 1 0.9759 -11.7512 -0.4010 44 1 -0.7028 -12.0530 1.2145 45 1 0.5942 -11.6285 2.3803 46 1 -1.6347 -10.0929 2.2683 47 1 -0.0312 -9.3013 2.4003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699069117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:57 Heat of formation + Delta-G solvation = -115.670786 kcal Electronic energy + Delta-G solvation = -29006.013246 eV Core-core repulsion = 24959.969561 eV Total energy + Delta-G solvation = -4046.043685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.04 seconds Orbital eigenvalues (eV) -42.12978 -40.01667 -39.33978 -38.79086 -36.11409 -35.42784 -33.66973 -33.25337 -32.90360 -31.72184 -30.70986 -29.11901 -27.22146 -25.27808 -24.23767 -23.88483 -22.96289 -22.79499 -22.06807 -20.87782 -19.29818 -18.85954 -18.50596 -17.79494 -17.40355 -17.10412 -16.73076 -16.46742 -16.34100 -15.80187 -15.70965 -15.59168 -15.50322 -15.06047 -14.83270 -14.68834 -14.30564 -14.22881 -14.07027 -13.83369 -13.66417 -13.27996 -13.06533 -12.96864 -12.79556 -12.72793 -12.25339 -12.24466 -12.21490 -12.01696 -11.89328 -11.82759 -11.79054 -11.62681 -11.07328 -10.97187 -10.61586 -10.22597 -9.85982 -9.72788 -9.02969 -7.95582 -5.25671 0.26386 0.45632 1.40904 1.46820 1.50133 1.56405 1.98597 2.54823 2.55626 2.81935 3.33870 3.40911 3.43423 3.53404 3.58910 3.62528 3.96131 3.99688 4.04221 4.08844 4.12808 4.15953 4.25670 4.34707 4.37592 4.55563 4.56875 4.61565 4.63808 4.66803 4.76993 4.88706 4.89581 4.90972 5.01444 5.09091 5.11623 5.16080 5.26516 5.45665 5.46705 5.51463 5.58591 5.72509 6.03763 6.25025 6.38693 6.75815 7.02796 7.32285 8.06959 8.30825 9.27412 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.002487 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.223577 B =11257.879418 C =12033.749050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.124 3.876 11 C 0.109 3.891 12 H 0.098 0.902 13 O -0.561 6.561 14 C 0.100 3.900 15 N -0.701 5.701 16 C 0.507 3.493 17 O -0.568 6.568 18 C 0.139 3.861 19 C -0.101 4.101 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.130 4.130 24 C -0.105 4.105 25 C -0.143 4.143 26 C -0.144 4.144 27 C 0.034 3.966 28 O -0.364 6.364 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.384 0.616 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.413 0.587 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -29.546 -2.321 29.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.004 4.004 11 C 0.049 3.951 12 H 0.116 0.884 13 O -0.368 6.368 14 C -0.024 4.024 15 N -0.352 5.352 16 C 0.292 3.708 17 O -0.448 6.448 18 C 0.095 3.905 19 C -0.101 4.101 20 C -0.134 4.134 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.147 4.147 24 C -0.123 4.123 25 C -0.181 4.181 26 C -0.182 4.182 27 C -0.041 4.041 28 O -0.283 6.283 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.233 0.767 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.249 0.751 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.137 0.863 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.635 -29.413 -2.772 29.588 hybrid contribution 0.279 1.328 0.495 1.444 sum -1.355 -28.085 -2.276 28.210 Atomic orbital electron populations 1.69837 1.06675 1.26219 1.59060 1.25617 0.96414 1.01237 1.03456 0.85183 0.77178 0.78965 0.78239 1.20333 1.22079 1.20282 1.19608 0.91514 0.85321 1.41842 0.90579 1.42399 1.05777 1.00688 1.89407 1.21380 0.94136 0.85711 0.99154 1.22070 0.92241 0.91245 0.89532 0.88448 1.86570 1.37488 1.96389 1.16316 1.21925 0.92102 0.85301 1.03109 1.45824 1.11629 1.05028 1.72671 1.21220 0.89354 0.84823 0.75364 1.90668 1.17770 1.84917 1.51443 1.20855 0.84856 0.93065 0.91676 1.19457 0.98295 0.99687 0.92676 1.21264 0.99423 0.97689 0.94998 1.21451 0.97943 1.00335 0.94508 1.21582 0.95101 0.95676 1.01051 1.21466 1.00695 0.98859 0.93721 1.21131 0.96631 0.98954 0.95625 1.23129 1.00659 0.94990 0.99307 1.23161 0.98782 0.97877 0.98363 1.23884 1.02883 0.93335 0.84040 1.88927 1.35510 1.78463 1.25418 0.93942 0.79062 0.95008 0.94927 0.76674 0.90543 0.90629 0.75071 0.84720 0.83390 0.83498 0.84182 0.85731 0.89774 0.87923 0.88911 0.88189 0.86252 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.11 13.06 21.65 0.28 -59.83 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 3 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -37.93 5.49 -343.44 -1.89 -39.81 16 10 C 0.12 4.80 5.92 86.38 0.51 5.31 16 11 C 0.11 3.41 3.09 30.59 0.09 3.51 16 12 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 13 O -0.56 -18.08 13.03 -148.98 -1.94 -20.02 16 14 C 0.10 2.71 5.31 86.38 0.46 3.17 16 15 N -0.70 -18.07 5.42 -463.07 -2.51 -20.58 16 16 C 0.51 13.64 6.66 87.65 0.58 14.22 16 17 O -0.57 -18.41 15.56 -3.05 -0.05 -18.46 16 18 C 0.14 2.99 0.90 -11.92 -0.01 2.98 16 19 C -0.10 -2.15 4.84 -19.87 -0.10 -2.24 16 20 C -0.12 -2.16 8.73 22.27 0.19 -1.97 16 21 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 22 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 24 C -0.11 -2.20 9.36 22.27 0.21 -1.99 16 25 C -0.14 -2.51 5.63 31.59 0.18 -2.33 16 26 C -0.14 -1.84 7.15 31.90 0.23 -1.61 16 27 C 0.03 0.54 7.66 72.66 0.56 1.09 16 28 O -0.36 -7.58 9.35 -148.98 -1.39 -8.97 16 29 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.38 20.95 7.54 -92.71 -0.70 20.25 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.38 10.23 9.04 -74.06 -0.67 9.56 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.41 10.25 7.99 -92.70 -0.74 9.50 16 37 H 0.14 2.21 6.45 -2.91 -0.02 2.19 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.12 2.60 7.56 -2.91 -0.02 2.58 16 42 H 0.08 1.73 6.72 -2.39 -0.02 1.71 16 43 H 0.10 1.51 5.78 -2.39 -0.01 1.50 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.74 388.35 -1.68 -74.43 By element: Atomic # 1 Polarization: 48.30 SS G_CDS: -1.10 Total: 47.20 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 4.88 Total: -2.38 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -4.11 Total: -120.22 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -3.38 Total: -47.45 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -72.74 -1.68 -74.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699069117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.245 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.05 seconds