Wall clock time and date at job start Tue Mar 31 2020 22:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46715 * 305.00316 * 11 10 9 13 13 O 1.42909 * 109.46677 * 64.99648 * 11 10 9 14 14 C 1.52998 * 109.47271 * 184.99679 * 11 10 9 15 15 N 1.46500 * 109.47029 * 180.02562 * 14 11 10 16 16 C 1.34773 * 119.99834 * 180.02562 * 15 14 11 17 17 O 1.21281 * 120.00301 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00010 * 179.97438 * 16 15 14 19 19 C 1.50700 * 109.81977 * 84.11526 * 18 16 15 20 20 C 1.38236 * 120.00254 * 90.42717 * 19 18 16 21 21 C 1.38235 * 120.00447 * 179.78645 * 20 19 18 22 22 C 1.38239 * 119.99722 * 0.44775 * 21 20 19 23 23 C 1.38236 * 119.99926 * 359.80502 * 22 21 20 24 24 C 1.38234 * 120.00181 * 270.70327 * 19 18 16 25 25 C 1.54374 * 109.83265 * 204.99875 * 18 16 15 26 26 C 1.55311 * 102.25247 * 98.16038 * 25 18 16 27 27 C 1.54949 * 100.93797 * 34.13417 * 26 25 18 28 28 O 1.43234 * 109.83089 * 323.13990 * 18 16 15 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 32 32 H 1.08993 * 109.47302 * 59.99785 * 10 9 7 33 33 H 0.96697 * 113.99629 * 60.00569 * 13 11 10 34 34 H 1.09003 * 109.47004 * 300.00185 * 14 11 10 35 35 H 1.08998 * 109.46994 * 59.99814 * 14 11 10 36 36 H 0.96997 * 119.99564 * 359.97438 * 15 14 11 37 37 H 1.08001 * 119.99655 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.00385 * 180.27507 * 21 20 19 39 39 H 1.07997 * 119.99927 * 179.83226 * 22 21 20 40 40 H 1.07994 * 120.00042 * 180.02562 * 23 22 21 41 41 H 1.08007 * 119.99975 * 359.97438 * 24 19 18 42 42 H 1.09002 * 110.85051 * 216.34816 * 25 18 16 43 43 H 1.09001 * 110.85281 * 339.97061 * 25 18 16 44 44 H 1.08997 * 111.12402 * 152.05040 * 26 25 18 45 45 H 1.08996 * 111.12572 * 276.17225 * 26 25 18 46 46 H 1.08997 * 110.31227 * 82.47678 * 27 26 25 47 47 H 1.09009 * 110.30451 * 204.64363 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0636 -4.8198 0.0118 12 1 0.3831 -4.7107 0.8561 13 8 0.3161 -4.8146 -1.2062 14 6 1.8249 -6.1409 0.1374 15 7 0.8729 -7.2544 0.1435 16 6 1.3192 -8.5219 0.2468 17 8 2.5088 -8.7407 0.3351 18 6 0.3399 -9.6673 0.2537 19 6 -0.0144 -10.0452 -1.1615 20 6 0.7273 -11.0028 -1.8276 21 6 0.3996 -11.3526 -3.1242 22 6 -0.6642 -10.7381 -3.7580 23 6 -1.4027 -9.7768 -3.0937 24 6 -1.0777 -9.4301 -1.7956 25 6 0.9583 -10.8808 0.9805 26 6 0.3446 -10.7613 2.4022 27 6 -1.0561 -10.1876 2.0706 28 8 -0.8429 -9.2911 0.9686 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0092 31 1 2.6812 -3.7166 -0.8876 32 1 2.6880 -3.7126 0.8923 33 1 0.8588 -4.9080 -2.0011 34 1 2.5055 -6.2498 -0.7071 35 1 2.3951 -6.1447 1.0663 36 1 -0.0786 -7.0793 0.0740 37 1 1.5611 -11.4799 -1.3339 38 1 0.9764 -12.1039 -3.6430 39 1 -0.9185 -11.0094 -4.7719 40 1 -2.2341 -9.2970 -3.5887 41 1 -1.6548 -8.6790 -1.2766 42 1 0.6558 -11.8136 0.5046 43 1 2.0445 -10.7980 1.0186 44 1 0.2661 -11.7381 2.8795 45 1 0.9169 -10.0696 3.0203 46 1 -1.7344 -10.9898 1.7800 47 1 -1.4553 -9.6453 2.9277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699069119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:49 Heat of formation + Delta-G solvation = -92.433791 kcal Electronic energy + Delta-G solvation = -29014.085376 eV Core-core repulsion = 24969.049323 eV Total energy + Delta-G solvation = -4045.036053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.23425 -39.04876 -38.52728 -37.50608 -34.45458 -33.99448 -32.86222 -32.28800 -31.27321 -31.02025 -29.29841 -28.33440 -25.59899 -24.02999 -23.20930 -22.74828 -21.77383 -21.60284 -21.38574 -19.91497 -18.25371 -17.60839 -17.14172 -16.61342 -16.14991 -15.93696 -15.81185 -15.63038 -14.99791 -14.80117 -14.53785 -14.43761 -14.18781 -13.85876 -13.70849 -13.58713 -13.40991 -13.00536 -12.89927 -12.61416 -12.35062 -12.27840 -12.17217 -11.83794 -11.64492 -11.56730 -11.22601 -11.12447 -10.96076 -10.79839 -10.72855 -10.57748 -10.20341 -9.84399 -9.74516 -9.47688 -9.13998 -9.08768 -8.94441 -8.89032 -6.93287 -5.75269 -3.04999 1.00938 1.18272 2.47025 3.05105 3.22429 3.44766 3.48808 3.50160 3.56553 4.09774 4.24399 4.48657 4.56300 4.64234 4.71888 4.72648 4.78957 4.81979 4.88438 4.90710 5.01049 5.22483 5.26389 5.31053 5.33951 5.39239 5.40557 5.56411 5.62371 5.64513 5.68296 5.74402 5.79668 5.81361 5.97013 6.20409 6.21109 6.21289 6.29076 6.39178 6.51645 6.56064 6.68786 6.73514 7.48231 7.68607 7.95269 8.12435 8.42859 9.54335 10.10980 10.46831 11.47041 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.002469 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.079333 B =11336.921189 C =12059.954754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.090 3.910 12 H 0.105 0.895 13 O -0.551 6.551 14 C 0.087 3.913 15 N -0.703 5.703 16 C 0.522 3.478 17 O -0.539 6.539 18 C 0.138 3.862 19 C -0.097 4.097 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.087 4.087 25 C -0.139 4.139 26 C -0.157 4.157 27 C 0.050 3.950 28 O -0.361 6.361 29 H 0.256 0.744 30 H 0.389 0.611 31 H 0.023 0.977 32 H 0.028 0.972 33 H 0.372 0.628 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.411 0.589 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -28.758 -1.097 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.370 5.370 10 C -0.001 4.001 11 C 0.030 3.970 12 H 0.123 0.877 13 O -0.356 6.356 14 C -0.037 4.037 15 N -0.354 5.354 16 C 0.306 3.694 17 O -0.417 6.417 18 C 0.095 3.905 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.105 4.105 25 C -0.177 4.177 26 C -0.195 4.195 27 C -0.026 4.026 28 O -0.280 6.280 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.219 0.781 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.247 0.753 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.352 -28.504 -0.667 28.609 hybrid contribution 0.347 0.852 -0.345 0.982 sum -2.005 -27.652 -1.011 27.743 Atomic orbital electron populations 1.69669 1.05104 1.25792 1.57259 1.24761 0.95534 0.97717 1.02830 0.86253 0.78507 0.83463 0.77848 1.21244 1.21638 1.21251 1.19174 0.90962 0.84119 1.43295 0.91275 1.42231 1.06076 0.99376 1.89358 1.21197 0.93500 0.86598 0.98813 1.22393 0.94492 0.91726 0.88414 0.87696 1.86586 1.37428 1.96197 1.15391 1.22148 0.92306 0.86113 1.03126 1.45828 1.11590 1.05193 1.72771 1.20328 0.88892 0.83995 0.76184 1.90691 1.16269 1.84387 1.50335 1.20880 0.85315 0.93504 0.90841 1.19686 0.97616 0.98299 0.94179 1.21037 0.99157 0.96916 0.95033 1.21109 0.97812 1.00445 0.94813 1.21232 0.95627 0.96510 0.99865 1.21202 1.00130 0.97855 0.94726 1.21043 0.96183 0.98794 0.94457 1.23226 1.03435 0.96421 0.94603 1.23304 0.96204 1.02725 0.97234 1.23483 0.96747 0.93265 0.89089 1.88434 1.42658 1.53614 1.43280 0.93417 0.77701 0.95930 0.95416 0.78064 0.91048 0.90398 0.75346 0.85653 0.85859 0.85987 0.85668 0.85186 0.89328 0.87667 0.89334 0.90020 0.91641 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.61 5.55 -59.91 -0.33 -18.94 16 10 C 0.13 2.52 5.90 -4.04 -0.02 2.50 16 11 C 0.09 1.43 3.09 -26.73 -0.08 1.34 16 12 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 13 O -0.55 -8.99 13.03 -35.23 -0.46 -9.45 16 14 C 0.09 1.22 5.34 -4.04 -0.02 1.19 16 15 N -0.70 -9.25 5.36 -60.29 -0.32 -9.57 16 16 C 0.52 7.10 6.73 -10.99 -0.07 7.03 16 17 O -0.54 -8.73 15.56 5.56 0.09 -8.64 16 18 C 0.14 1.50 0.98 -92.20 -0.09 1.41 16 19 C -0.10 -1.05 4.80 -104.62 -0.50 -1.55 16 20 C -0.10 -1.01 8.75 -39.58 -0.35 -1.36 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 22 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.09 -0.91 9.36 -39.58 -0.37 -1.28 16 25 C -0.14 -1.24 4.98 -24.79 -0.12 -1.37 16 26 C -0.16 -1.16 7.16 -24.48 -0.18 -1.34 16 27 C 0.05 0.39 7.78 38.19 0.30 0.69 16 28 O -0.36 -3.82 9.13 -35.23 -0.32 -4.14 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.39 10.66 7.67 -40.82 -0.31 10.34 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.37 5.12 9.04 45.56 0.41 5.53 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.41 5.20 7.86 -40.82 -0.32 4.88 16 37 H 0.13 1.09 6.85 -52.49 -0.36 0.73 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 1.35 7.55 -52.48 -0.40 0.96 16 42 H 0.09 0.66 6.88 -51.93 -0.36 0.30 16 43 H 0.10 1.07 6.75 -51.93 -0.35 0.72 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -34.09 389.23 -9.04 -43.13 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -6.30 Total: 16.64 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.95 Total: -4.64 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.07 Total: -56.35 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.69 Total: -22.24 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.09 -9.04 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699069119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.300 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds