Wall clock time and date at job start Tue Mar 31 2020 22:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46715 * 305.00316 * 11 10 9 13 13 O 1.42909 * 109.46677 * 64.99648 * 11 10 9 14 14 C 1.52998 * 109.47271 * 184.99679 * 11 10 9 15 15 N 1.46500 * 109.47029 * 180.02562 * 14 11 10 16 16 C 1.34773 * 119.99834 * 180.02562 * 15 14 11 17 17 O 1.21281 * 120.00301 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00010 * 179.97438 * 16 15 14 19 19 C 1.50700 * 109.81977 * 84.11526 * 18 16 15 20 20 C 1.38236 * 120.00254 * 90.42717 * 19 18 16 21 21 C 1.38235 * 120.00447 * 179.78645 * 20 19 18 22 22 C 1.38239 * 119.99722 * 0.44775 * 21 20 19 23 23 C 1.38236 * 119.99926 * 359.80502 * 22 21 20 24 24 C 1.38234 * 120.00181 * 270.70327 * 19 18 16 25 25 C 1.54374 * 109.83265 * 204.99875 * 18 16 15 26 26 C 1.55311 * 102.25247 * 98.16038 * 25 18 16 27 27 C 1.54949 * 100.93797 * 34.13417 * 26 25 18 28 28 O 1.43234 * 109.83089 * 323.13990 * 18 16 15 29 29 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47081 * 299.99904 * 10 9 7 32 32 H 1.08993 * 109.47302 * 59.99785 * 10 9 7 33 33 H 0.96697 * 113.99629 * 60.00569 * 13 11 10 34 34 H 1.09003 * 109.47004 * 300.00185 * 14 11 10 35 35 H 1.08998 * 109.46994 * 59.99814 * 14 11 10 36 36 H 0.96997 * 119.99564 * 359.97438 * 15 14 11 37 37 H 1.08001 * 119.99655 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.00385 * 180.27507 * 21 20 19 39 39 H 1.07997 * 119.99927 * 179.83226 * 22 21 20 40 40 H 1.07994 * 120.00042 * 180.02562 * 23 22 21 41 41 H 1.08007 * 119.99975 * 359.97438 * 24 19 18 42 42 H 1.09002 * 110.85051 * 216.34816 * 25 18 16 43 43 H 1.09001 * 110.85281 * 339.97061 * 25 18 16 44 44 H 1.08997 * 111.12402 * 152.05040 * 26 25 18 45 45 H 1.08996 * 111.12572 * 276.17225 * 26 25 18 46 46 H 1.08997 * 110.31227 * 82.47678 * 27 26 25 47 47 H 1.09009 * 110.30451 * 204.64363 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 1.0636 -4.8198 0.0118 12 1 0.3831 -4.7107 0.8561 13 8 0.3161 -4.8146 -1.2062 14 6 1.8249 -6.1409 0.1374 15 7 0.8729 -7.2544 0.1435 16 6 1.3192 -8.5219 0.2468 17 8 2.5088 -8.7407 0.3351 18 6 0.3399 -9.6673 0.2537 19 6 -0.0144 -10.0452 -1.1615 20 6 0.7273 -11.0028 -1.8276 21 6 0.3996 -11.3526 -3.1242 22 6 -0.6642 -10.7381 -3.7580 23 6 -1.4027 -9.7768 -3.0937 24 6 -1.0777 -9.4301 -1.7956 25 6 0.9583 -10.8808 0.9805 26 6 0.3446 -10.7613 2.4022 27 6 -1.0561 -10.1876 2.0706 28 8 -0.8429 -9.2911 0.9686 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 0.0092 31 1 2.6812 -3.7166 -0.8876 32 1 2.6880 -3.7126 0.8923 33 1 0.8588 -4.9080 -2.0011 34 1 2.5055 -6.2498 -0.7071 35 1 2.3951 -6.1447 1.0663 36 1 -0.0786 -7.0793 0.0740 37 1 1.5611 -11.4799 -1.3339 38 1 0.9764 -12.1039 -3.6430 39 1 -0.9185 -11.0094 -4.7719 40 1 -2.2341 -9.2970 -3.5887 41 1 -1.6548 -8.6790 -1.2766 42 1 0.6558 -11.8136 0.5046 43 1 2.0445 -10.7980 1.0186 44 1 0.2661 -11.7381 2.8795 45 1 0.9169 -10.0696 3.0203 46 1 -1.7344 -10.9898 1.7800 47 1 -1.4553 -9.6453 2.9277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699069119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:35 Heat of formation + Delta-G solvation = -117.958552 kcal Electronic energy + Delta-G solvation = -29015.192213 eV Core-core repulsion = 24969.049323 eV Total energy + Delta-G solvation = -4046.142890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.86 seconds Orbital eigenvalues (eV) -42.08330 -40.02596 -39.31902 -38.80039 -36.12293 -35.40073 -33.61320 -33.26707 -32.92038 -31.70837 -30.71262 -29.20985 -27.17580 -25.12439 -24.26141 -23.83074 -22.85607 -22.72024 -22.28090 -20.87547 -19.36165 -19.02969 -18.34021 -17.84166 -17.21541 -16.89014 -16.79805 -16.53762 -16.44310 -15.84813 -15.69257 -15.54908 -15.36877 -14.93639 -14.92683 -14.61943 -14.42153 -14.23681 -14.09089 -13.83250 -13.62751 -13.26492 -13.04027 -12.97526 -12.80668 -12.72546 -12.31847 -12.25329 -12.21294 -12.01119 -11.91960 -11.82891 -11.81477 -11.54392 -11.05079 -10.96668 -10.53129 -10.20616 -9.84169 -9.71546 -9.02955 -7.95582 -5.25645 0.28538 0.47674 1.43195 1.46866 1.50283 1.56495 2.02023 2.49730 2.55418 2.83641 3.34183 3.40183 3.45160 3.52707 3.55277 3.66991 3.97712 4.00465 4.05562 4.09809 4.15434 4.18349 4.26112 4.33485 4.38281 4.56972 4.58393 4.63918 4.66103 4.70334 4.77228 4.86011 4.90343 4.94975 5.00839 5.11228 5.14344 5.17529 5.28889 5.46695 5.51052 5.53181 5.60334 5.81144 6.05760 6.25094 6.42062 6.75107 7.05339 7.32144 8.06714 8.30369 9.27485 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.002469 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.079333 B =11336.921189 C =12059.954754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.124 3.876 11 C 0.109 3.891 12 H 0.098 0.902 13 O -0.562 6.562 14 C 0.100 3.900 15 N -0.700 5.700 16 C 0.518 3.482 17 O -0.569 6.569 18 C 0.142 3.858 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.116 4.116 23 C -0.130 4.130 24 C -0.102 4.102 25 C -0.138 4.138 26 C -0.152 4.152 27 C 0.043 3.957 28 O -0.376 6.376 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.384 0.616 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.413 0.587 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 -30.249 -1.565 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.003 4.003 11 C 0.049 3.951 12 H 0.116 0.884 13 O -0.368 6.368 14 C -0.025 4.025 15 N -0.350 5.350 16 C 0.303 3.697 17 O -0.449 6.449 18 C 0.099 3.901 19 C -0.112 4.112 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.134 4.134 23 C -0.148 4.148 24 C -0.120 4.120 25 C -0.175 4.175 26 C -0.189 4.189 27 C -0.032 4.032 28 O -0.295 6.295 29 H 0.061 0.939 30 H 0.208 0.792 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.250 0.750 37 H 0.150 0.850 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.141 0.859 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.877 -30.031 -1.138 30.111 hybrid contribution 0.215 1.234 -0.230 1.274 sum -1.662 -28.797 -1.368 28.877 Atomic orbital electron populations 1.69834 1.06684 1.26226 1.59076 1.25621 0.96421 1.01257 1.03458 0.85179 0.77176 0.78941 0.78243 1.20303 1.22077 1.20293 1.19612 0.91523 0.85316 1.41824 0.90556 1.42415 1.05725 1.00748 1.89412 1.21387 0.94124 0.85655 0.99141 1.22079 0.93426 0.91340 0.88243 0.88418 1.86566 1.38061 1.96178 1.15991 1.21912 0.92038 0.85324 1.03220 1.45799 1.11544 1.05098 1.72575 1.20894 0.89092 0.84495 0.75180 1.90668 1.17656 1.84864 1.51669 1.20801 0.84987 0.92742 0.91574 1.19758 0.98171 0.99080 0.94166 1.21235 0.99329 0.96951 0.95703 1.21442 0.97872 1.00623 0.94449 1.21564 0.95157 0.95812 1.00885 1.21451 1.00719 0.98187 0.94420 1.21111 0.96573 0.99161 0.95188 1.23239 1.02484 0.96306 0.95514 1.23307 0.95463 1.03840 0.96284 1.23705 0.97308 0.93529 0.88691 1.88417 1.42378 1.54636 1.44083 0.93937 0.79151 0.95076 0.94801 0.76728 0.90803 0.90416 0.75016 0.84953 0.83537 0.83617 0.84348 0.85855 0.87650 0.89070 0.86708 0.91181 0.90174 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 3 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -38.10 5.55 -343.45 -1.91 -40.01 16 10 C 0.12 4.85 5.90 86.38 0.51 5.36 16 11 C 0.11 3.44 3.09 30.60 0.09 3.54 16 12 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 13 O -0.56 -18.13 13.03 -148.98 -1.94 -20.07 16 14 C 0.10 2.73 5.34 86.38 0.46 3.19 16 15 N -0.70 -18.31 5.36 -463.06 -2.48 -20.79 16 16 C 0.52 14.06 6.73 87.66 0.59 14.65 16 17 O -0.57 -18.47 15.56 -3.03 -0.05 -18.52 16 18 C 0.14 3.03 0.98 -11.82 -0.01 3.02 16 19 C -0.11 -2.32 4.80 -19.87 -0.10 -2.42 16 20 C -0.11 -2.10 8.75 22.27 0.19 -1.90 16 21 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 22 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16 23 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 24 C -0.10 -2.11 9.36 22.27 0.21 -1.90 16 25 C -0.14 -2.34 4.98 31.85 0.16 -2.18 16 26 C -0.15 -2.03 7.16 32.05 0.23 -1.80 16 27 C 0.04 0.62 7.78 72.65 0.56 1.19 16 28 O -0.38 -7.77 9.13 -148.98 -1.36 -9.13 16 29 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.38 20.97 7.67 -92.71 -0.71 20.26 16 31 H 0.03 1.18 8.14 -2.38 -0.02 1.17 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.38 10.29 9.04 -74.06 -0.67 9.62 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.41 10.47 7.86 -92.71 -0.73 9.74 16 37 H 0.13 2.15 6.85 -2.91 -0.02 2.13 16 38 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 41 H 0.12 2.61 7.55 -2.91 -0.02 2.59 16 42 H 0.11 1.40 6.88 -2.39 -0.02 1.38 16 43 H 0.09 1.83 6.75 -2.39 -0.02 1.81 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -72.71 389.23 -1.65 -74.36 By element: Atomic # 1 Polarization: 48.53 SS G_CDS: -1.10 Total: 47.43 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 4.88 Total: -1.84 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -4.11 Total: -120.77 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -3.35 Total: -47.72 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -72.71 -1.65 -74.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699069119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.599 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.86 seconds