Wall clock time and date at job start Tue Mar 31 2020 21:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48505 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47377 * 300.00116 * 3 2 1 6 6 H 1.48498 * 109.47181 * 60.00180 * 3 2 1 7 7 C 1.38813 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99741 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99756 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46987 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.30474 * 56.86514 * 11 10 9 13 13 C 1.54382 * 110.34549 * 294.68915 * 11 10 9 14 14 N 1.48143 * 104.62105 * 217.15975 * 13 11 10 15 15 C 1.34779 * 127.83755 * 219.58662 * 14 13 11 16 16 O 1.21278 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99524 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.46697 * 179.97438 * 17 15 14 19 19 C 1.53777 * 113.61626 * 274.13487 * 18 17 15 20 20 C 1.53948 * 87.01936 * 220.04776 * 19 18 17 21 21 C 1.53771 * 87.11243 * 25.36237 * 20 19 18 22 22 C 1.48151 * 104.32390 * 39.58009 * 14 13 11 23 23 C 1.54281 * 110.43294 * 179.09769 * 11 10 9 24 24 H 1.09004 * 110.34475 * 237.79109 * 23 11 10 25 25 C 1.53002 * 110.34327 * 359.93779 * 23 11 10 26 26 F 1.39908 * 109.46789 * 59.24602 * 25 23 11 27 27 F 1.39899 * 109.47568 * 179.23949 * 25 23 11 28 28 F 1.39895 * 109.47275 * 299.24579 * 25 23 11 29 29 H 0.96998 * 119.99770 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00450 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47299 * 59.99436 * 10 9 7 32 32 H 1.08999 * 109.46902 * 299.98930 * 10 9 7 33 33 H 1.09002 * 110.40661 * 335.93928 * 13 11 10 34 34 H 1.08996 * 110.41009 * 98.37109 * 13 11 10 35 35 H 1.08998 * 109.47062 * 299.99647 * 17 15 14 36 36 H 1.08999 * 109.47263 * 60.00407 * 17 15 14 37 37 H 1.09006 * 112.84581 * 45.33465 * 18 17 15 38 38 H 1.08995 * 113.61330 * 334.57455 * 19 18 17 39 39 H 1.08999 * 113.61218 * 105.46870 * 19 18 17 40 40 H 1.08999 * 113.54149 * 270.80780 * 20 19 18 41 41 H 1.09005 * 113.66781 * 139.93390 * 20 19 18 42 42 H 1.08996 * 113.61753 * 220.08548 * 21 20 19 43 43 H 1.09007 * 113.69056 * 89.20003 * 21 20 19 44 44 H 1.08997 * 110.40714 * 201.63466 * 22 14 13 45 45 H 1.09005 * 110.50052 * 79.25238 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 1 0.3937 -4.7439 -0.8585 13 6 0.2550 -4.8351 1.3126 14 7 0.0871 -6.2720 1.6316 15 6 -1.0041 -6.8862 2.1301 16 8 -2.0047 -6.2443 2.3703 17 6 -0.9808 -8.3706 2.3891 18 6 -2.3342 -8.8116 2.9503 19 6 -2.4479 -8.6583 4.4762 20 6 -3.1918 -10.0061 4.4755 21 6 -2.4446 -10.3294 3.1710 22 6 1.3907 -6.8807 1.2781 23 6 1.8126 -6.1684 -0.0250 24 1 1.5103 -6.7551 -0.8925 25 6 3.3249 -5.9370 -0.0417 26 9 3.6981 -5.2110 1.0946 27 9 3.9855 -7.1703 -0.0447 28 9 3.6741 -5.2182 -1.1899 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6842 -3.7148 0.8888 32 1 2.6853 -3.7141 -0.8912 33 1 0.8087 -4.3320 2.1054 34 1 -0.7161 -4.3620 1.1671 35 1 -0.7843 -8.8991 1.4563 36 1 -0.1964 -8.6014 3.1099 37 1 -3.1772 -8.3873 2.4048 38 1 -1.4876 -8.6899 4.9909 39 1 -3.0675 -7.8167 4.7855 40 1 -4.2699 -9.9082 4.3484 41 1 -2.9201 -10.6564 5.3071 42 1 -3.0615 -10.8350 2.4282 43 1 -1.4832 -10.8191 3.3268 44 1 1.2763 -7.9509 1.1064 45 1 2.1228 -6.6987 2.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700931971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:37 Heat of formation + Delta-G solvation = -144.392583 kcal Electronic energy + Delta-G solvation = -30205.188970 eV Core-core repulsion = 25616.043074 eV Total energy + Delta-G solvation = -4589.145896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -50.22180 -47.67322 -47.55272 -40.32981 -38.96840 -37.57114 -34.69576 -32.67119 -31.09257 -30.81563 -28.87888 -26.06482 -25.80727 -25.50211 -23.86392 -23.03172 -22.08855 -20.29669 -19.68319 -19.40696 -18.50891 -18.20451 -17.46732 -17.07715 -16.67806 -16.19082 -15.55550 -15.41419 -15.23327 -14.72540 -14.64866 -14.49782 -14.18253 -14.11074 -13.84074 -13.72559 -13.67424 -13.46987 -13.20958 -12.91428 -12.69332 -12.65478 -12.28099 -12.00995 -11.89897 -11.85210 -11.68489 -11.60765 -10.99583 -10.86199 -10.79689 -10.70467 -10.53973 -10.43857 -10.38640 -10.00089 -9.78792 -9.68765 -8.86621 -8.79282 -6.89811 -5.75144 -3.04098 2.55494 2.63172 2.94022 3.44989 3.50590 3.52951 3.71869 3.78653 3.95681 4.23039 4.39961 4.45587 4.49652 4.54927 4.61533 4.66268 4.76053 4.82649 5.02543 5.11363 5.16465 5.23435 5.32236 5.35210 5.46936 5.50514 5.54640 5.62019 5.65414 5.67869 5.71290 5.89337 5.97041 6.04373 6.07705 6.25891 6.28719 6.30352 6.64635 6.71978 7.47269 7.72488 8.12757 8.42688 9.54324 10.09463 10.44494 11.47597 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.003306 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.938437 B = 8467.339585 C =10370.547695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.111 3.889 11 C -0.100 4.100 12 H 0.097 0.903 13 C 0.115 3.885 14 N -0.625 5.625 15 C 0.534 3.466 16 O -0.530 6.530 17 C -0.128 4.128 18 C -0.095 4.095 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.138 4.138 22 C 0.110 3.890 23 C -0.147 4.147 24 H 0.124 0.876 25 C 0.463 3.537 26 F -0.169 7.169 27 F -0.188 7.188 28 F -0.169 7.169 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -24.172 4.067 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.373 5.373 10 C -0.016 4.016 11 C -0.120 4.120 12 H 0.115 0.885 13 C -0.007 4.007 14 N -0.360 5.360 15 C 0.323 3.677 16 O -0.406 6.406 17 C -0.168 4.168 18 C -0.114 4.114 19 C -0.172 4.172 20 C -0.180 4.180 21 C -0.175 4.175 22 C -0.014 4.014 23 C -0.168 4.168 24 H 0.142 0.858 25 C 0.408 3.592 26 F -0.151 7.151 27 F -0.170 7.170 28 F -0.150 7.150 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.532 -23.753 4.262 24.138 hybrid contribution 0.551 1.049 -0.179 1.199 sum 1.083 -22.703 4.083 23.093 Atomic orbital electron populations 1.69669 1.05076 1.25566 1.57755 1.24739 0.95520 0.97675 1.03020 0.86124 0.78805 0.84145 0.77165 1.20542 1.21894 1.21877 1.19233 0.91050 0.83942 1.42606 0.91100 1.42260 1.05705 0.99651 1.89734 1.21942 0.93511 0.85146 1.01016 1.22370 0.98107 0.92062 0.99440 0.88470 1.22472 1.01743 0.80487 0.95950 1.49060 1.12194 1.10316 1.64391 1.20338 0.81223 0.89785 0.76353 1.90737 1.31374 1.67146 1.51330 1.21712 0.99858 0.92121 1.03098 1.22354 0.96732 0.95541 0.96756 1.22970 1.00774 0.97699 0.95803 1.22822 0.99718 0.97667 0.97808 1.22973 1.00773 0.95803 0.97971 1.22266 0.86501 0.98038 0.94577 1.23458 0.89109 1.01679 1.02563 0.85791 1.20258 0.91015 0.73694 0.74197 1.93145 1.92994 1.77364 1.51568 1.93169 1.83799 1.43694 1.96304 1.93152 1.93495 1.77725 1.50641 0.93543 0.78315 0.93457 0.93456 0.89810 0.88925 0.88854 0.88909 0.88189 0.90398 0.91096 0.90227 0.91581 0.91459 0.90119 0.88984 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.11 5.42 -59.91 -0.32 -18.44 16 10 C 0.11 2.14 4.23 -4.04 -0.02 2.12 16 11 C -0.10 -1.49 3.09 -89.22 -0.28 -1.77 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 13 C 0.12 1.80 6.20 -2.41 -0.01 1.79 16 14 N -0.62 -7.91 3.32 -169.31 -0.56 -8.47 16 15 C 0.53 7.04 7.91 -10.98 -0.09 6.96 16 16 O -0.53 -9.27 16.05 5.56 0.09 -9.18 16 17 C -0.13 -1.12 4.50 -27.88 -0.13 -1.24 16 18 C -0.10 -0.87 3.11 -89.81 -0.28 -1.15 16 19 C -0.14 -1.24 7.65 -25.83 -0.20 -1.43 16 20 C -0.14 -1.06 8.09 -25.84 -0.21 -1.27 16 21 C -0.14 -0.96 7.64 -25.93 -0.20 -1.16 16 22 C 0.11 1.05 6.24 -2.41 -0.02 1.03 16 23 C -0.15 -1.60 3.07 -89.22 -0.27 -1.88 16 24 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 25 C 0.46 5.67 2.34 37.16 0.09 5.76 16 26 F -0.17 -2.37 13.38 2.25 0.03 -2.34 16 27 F -0.19 -2.05 17.16 2.25 0.04 -2.01 16 28 F -0.17 -2.42 14.33 2.25 0.03 -2.39 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.38 10.02 7.47 -40.82 -0.31 9.72 16 31 H 0.05 0.93 5.41 -51.93 -0.28 0.65 16 32 H 0.05 0.94 5.41 -51.93 -0.28 0.66 16 33 H 0.08 1.43 7.82 -51.93 -0.41 1.02 16 34 H 0.09 1.67 7.88 -51.93 -0.41 1.26 16 35 H 0.09 0.63 7.95 -51.93 -0.41 0.22 16 36 H 0.09 0.66 7.87 -51.93 -0.41 0.25 16 37 H 0.10 1.10 7.73 -51.93 -0.40 0.70 16 38 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 44 H 0.09 0.58 7.30 -51.93 -0.38 0.20 16 45 H 0.08 0.79 7.25 -51.93 -0.38 0.42 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -32.83 366.29 -7.90 -40.74 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.57 Total: 6.09 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.85 Total: 0.49 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.16 Total: -54.51 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.10 Total: -6.74 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.83 -7.90 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700931971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.656 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds