Wall clock time and date at job start Tue Mar 31 2020 21:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48505 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47377 * 300.00116 * 3 2 1 6 6 H 1.48498 * 109.47181 * 60.00180 * 3 2 1 7 7 C 1.38813 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99741 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99756 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46987 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.30474 * 56.86514 * 11 10 9 13 13 C 1.54382 * 110.34549 * 294.68915 * 11 10 9 14 14 N 1.48143 * 104.62105 * 217.15975 * 13 11 10 15 15 C 1.34779 * 127.83755 * 219.58662 * 14 13 11 16 16 O 1.21278 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99524 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.46697 * 179.97438 * 17 15 14 19 19 C 1.53777 * 113.61626 * 274.13487 * 18 17 15 20 20 C 1.53948 * 87.01936 * 220.04776 * 19 18 17 21 21 C 1.53771 * 87.11243 * 25.36237 * 20 19 18 22 22 C 1.48151 * 104.32390 * 39.58009 * 14 13 11 23 23 C 1.54281 * 110.43294 * 179.09769 * 11 10 9 24 24 H 1.09004 * 110.34475 * 237.79109 * 23 11 10 25 25 C 1.53002 * 110.34327 * 359.93779 * 23 11 10 26 26 F 1.39908 * 109.46789 * 59.24602 * 25 23 11 27 27 F 1.39899 * 109.47568 * 179.23949 * 25 23 11 28 28 F 1.39895 * 109.47275 * 299.24579 * 25 23 11 29 29 H 0.96998 * 119.99770 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00450 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47299 * 59.99436 * 10 9 7 32 32 H 1.08999 * 109.46902 * 299.98930 * 10 9 7 33 33 H 1.09002 * 110.40661 * 335.93928 * 13 11 10 34 34 H 1.08996 * 110.41009 * 98.37109 * 13 11 10 35 35 H 1.08998 * 109.47062 * 299.99647 * 17 15 14 36 36 H 1.08999 * 109.47263 * 60.00407 * 17 15 14 37 37 H 1.09006 * 112.84581 * 45.33465 * 18 17 15 38 38 H 1.08995 * 113.61330 * 334.57455 * 19 18 17 39 39 H 1.08999 * 113.61218 * 105.46870 * 19 18 17 40 40 H 1.08999 * 113.54149 * 270.80780 * 20 19 18 41 41 H 1.09005 * 113.66781 * 139.93390 * 20 19 18 42 42 H 1.08996 * 113.61753 * 220.08548 * 21 20 19 43 43 H 1.09007 * 113.69056 * 89.20003 * 21 20 19 44 44 H 1.08997 * 110.40714 * 201.63466 * 22 14 13 45 45 H 1.09005 * 110.50052 * 79.25238 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 1 0.3937 -4.7439 -0.8585 13 6 0.2550 -4.8351 1.3126 14 7 0.0871 -6.2720 1.6316 15 6 -1.0041 -6.8862 2.1301 16 8 -2.0047 -6.2443 2.3703 17 6 -0.9808 -8.3706 2.3891 18 6 -2.3342 -8.8116 2.9503 19 6 -2.4479 -8.6583 4.4762 20 6 -3.1918 -10.0061 4.4755 21 6 -2.4446 -10.3294 3.1710 22 6 1.3907 -6.8807 1.2781 23 6 1.8126 -6.1684 -0.0250 24 1 1.5103 -6.7551 -0.8925 25 6 3.3249 -5.9370 -0.0417 26 9 3.6981 -5.2110 1.0946 27 9 3.9855 -7.1703 -0.0447 28 9 3.6741 -5.2182 -1.1899 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6842 -3.7148 0.8888 32 1 2.6853 -3.7141 -0.8912 33 1 0.8087 -4.3320 2.1054 34 1 -0.7161 -4.3620 1.1671 35 1 -0.7843 -8.8991 1.4563 36 1 -0.1964 -8.6014 3.1099 37 1 -3.1772 -8.3873 2.4048 38 1 -1.4876 -8.6899 4.9909 39 1 -3.0675 -7.8167 4.7855 40 1 -4.2699 -9.9082 4.3484 41 1 -2.9201 -10.6564 5.3071 42 1 -3.0615 -10.8350 2.4282 43 1 -1.4832 -10.8191 3.3268 44 1 1.2763 -7.9509 1.1064 45 1 2.1228 -6.6987 2.0649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700931971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:31 Heat of formation + Delta-G solvation = -164.828398 kcal Electronic energy + Delta-G solvation = -30206.075133 eV Core-core repulsion = 25616.043074 eV Total energy + Delta-G solvation = -4590.032059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 4.90 seconds Orbital eigenvalues (eV) -51.23522 -48.62434 -48.62278 -41.32988 -39.80200 -38.61484 -36.45794 -34.13803 -32.69196 -31.66796 -30.27467 -27.27840 -26.75908 -26.41819 -25.29891 -24.12793 -23.37639 -21.48734 -20.55209 -20.18680 -19.55886 -19.26114 -19.15335 -18.07755 -18.06869 -17.03975 -16.71472 -16.57682 -16.47582 -16.02861 -15.49079 -15.42836 -15.42785 -15.22762 -15.15887 -15.05453 -14.72434 -14.62353 -14.43332 -14.23502 -13.63525 -13.44766 -13.26047 -13.24067 -13.17032 -12.92193 -12.81394 -12.74680 -12.46882 -12.33447 -12.21306 -12.05818 -11.74167 -11.64612 -11.47246 -11.23725 -11.04029 -10.93253 -10.79874 -9.91131 -8.97054 -7.95899 -5.24347 1.46037 1.46747 1.56631 1.57016 1.63646 1.94870 2.53295 2.74257 2.81242 3.00324 3.36057 3.41230 3.58671 3.60345 3.73210 3.77662 3.82329 3.98120 4.05431 4.08163 4.13252 4.29308 4.34348 4.43986 4.49099 4.57270 4.70471 4.71703 4.74827 4.82040 4.90691 4.94199 5.03716 5.05656 5.09947 5.13175 5.20827 5.21173 5.42773 5.48786 5.66948 6.25892 6.48754 7.11434 7.32334 8.06923 8.29735 9.27755 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.003306 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.938437 B = 8467.339585 C =10370.547695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.742 5.742 10 C 0.111 3.889 11 C -0.092 4.092 12 H 0.093 0.907 13 C 0.120 3.880 14 N -0.622 5.622 15 C 0.526 3.474 16 O -0.586 6.586 17 C -0.117 4.117 18 C -0.104 4.104 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.121 4.121 22 C 0.110 3.890 23 C -0.134 4.134 24 H 0.160 0.840 25 C 0.463 3.537 26 F -0.183 7.183 27 F -0.174 7.174 28 F -0.183 7.183 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.142 0.858 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 -27.454 3.842 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.385 5.385 10 C -0.015 4.015 11 C -0.112 4.112 12 H 0.112 0.888 13 C -0.004 4.004 14 N -0.355 5.355 15 C 0.318 3.682 16 O -0.465 6.465 17 C -0.156 4.156 18 C -0.123 4.123 19 C -0.182 4.182 20 C -0.179 4.179 21 C -0.158 4.158 22 C -0.012 4.012 23 C -0.155 4.155 24 H 0.178 0.822 25 C 0.409 3.591 26 F -0.164 7.164 27 F -0.155 7.155 28 F -0.164 7.164 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.160 0.840 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.549 -27.093 4.031 27.509 hybrid contribution -0.025 2.040 -0.082 2.042 sum 2.523 -25.053 3.949 25.487 Atomic orbital electron populations 1.69829 1.06618 1.25942 1.59687 1.25559 0.96367 1.01093 1.03860 0.85091 0.78290 0.79878 0.76630 1.18959 1.21993 1.22167 1.19616 0.91419 0.85230 1.40835 0.90711 1.42484 1.05438 1.01025 1.89546 1.22085 0.94157 0.84453 1.00789 1.22134 0.97421 0.92947 0.98677 0.88825 1.22113 0.99629 0.82724 0.95909 1.49103 1.13575 1.08815 1.64013 1.21350 0.80224 0.91599 0.75008 1.90721 1.33544 1.68705 1.53578 1.21804 1.00257 0.88127 1.05399 1.22341 0.96282 0.97519 0.96133 1.23050 1.01136 0.97738 0.96303 1.22825 0.99408 0.96656 0.98980 1.22930 1.01814 0.93776 0.97277 1.22575 0.84601 1.00334 0.93719 1.23498 0.87514 0.99341 1.05146 0.82215 1.20400 0.91685 0.73772 0.73277 1.93118 1.93176 1.77864 1.52249 1.93198 1.83610 1.42522 1.96175 1.93121 1.93667 1.78233 1.51403 0.94083 0.79610 0.93423 0.93278 0.91822 0.92466 0.85514 0.86104 0.91024 0.89321 0.94069 0.90826 0.90222 0.90754 0.87835 0.83987 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.97 47.18 29.55 68.60 2.03 49.20 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -37.93 5.42 -343.44 -1.86 -39.80 16 10 C 0.11 4.29 4.23 86.38 0.37 4.66 16 11 C -0.09 -2.70 3.09 -9.89 -0.03 -2.73 16 12 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 13 C 0.12 3.87 6.20 86.53 0.54 4.41 16 14 N -0.62 -14.88 3.32 -807.96 -2.68 -17.56 16 15 C 0.53 13.42 7.91 87.66 0.69 14.11 16 16 O -0.59 -21.45 16.05 -3.02 -0.05 -21.50 16 17 C -0.12 -1.64 4.50 29.85 0.13 -1.50 16 18 C -0.10 -1.74 3.11 -10.27 -0.03 -1.78 16 19 C -0.14 -2.56 7.65 31.18 0.24 -2.32 16 20 C -0.14 -1.86 8.09 31.17 0.25 -1.61 16 21 C -0.12 -1.28 7.64 31.12 0.24 -1.04 16 22 C 0.11 1.66 6.24 86.53 0.54 2.20 16 23 C -0.13 -2.52 3.07 -9.89 -0.03 -2.55 16 24 H 0.16 1.95 8.14 -2.38 -0.02 1.93 16 25 C 0.46 10.11 2.34 71.98 0.17 10.28 16 26 F -0.18 -4.82 13.38 44.97 0.60 -4.22 16 27 F -0.17 -3.11 17.16 44.97 0.77 -2.34 16 28 F -0.18 -4.90 14.33 44.97 0.64 -4.26 16 29 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.37 20.40 7.47 -92.71 -0.69 19.71 16 31 H 0.05 1.88 5.41 -2.39 -0.01 1.87 16 32 H 0.05 1.93 5.41 -2.39 -0.01 1.92 16 33 H 0.06 2.28 7.82 -2.39 -0.02 2.27 16 34 H 0.06 2.24 7.88 -2.39 -0.02 2.22 16 35 H 0.13 0.99 7.95 -2.39 -0.02 0.97 16 36 H 0.12 1.09 7.87 -2.39 -0.02 1.08 16 37 H 0.07 1.61 7.73 -2.38 -0.02 1.59 16 38 H 0.09 1.34 7.92 -2.39 -0.02 1.32 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.68 8.10 -2.38 -0.02 0.66 16 44 H 0.14 0.83 7.30 -2.39 -0.02 0.82 16 45 H 0.09 1.34 7.25 -2.38 -0.02 1.33 16 Total: -1.00 -75.98 366.29 4.44 -71.54 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.33 Total: 24.07 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 4.38 Total: 5.36 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -4.26 Total: -117.86 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 2.02 Total: -10.81 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -75.98 4.44 -71.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700931971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.293 kcal (2) G-P(sol) polarization free energy of solvation -75.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.90 seconds