Wall clock time and date at job start Tue Mar 31 2020 21:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48504 * 109.46841 * 269.99408 * 3 2 1 5 5 H 1.48500 * 109.47264 * 29.99425 * 3 2 1 6 6 H 1.48494 * 109.47172 * 149.99659 * 3 2 1 7 7 C 1.38813 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99910 * 180.02562 * 7 2 1 10 10 C 1.46507 * 120.00080 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47263 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.30461 * 52.83269 * 11 10 9 13 13 C 1.54784 * 110.52617 * 290.59532 * 11 10 9 14 14 N 1.48142 * 104.42118 * 265.22652 * 13 11 10 15 15 C 1.34773 * 127.84126 * 140.36749 * 14 13 11 16 16 O 1.21283 * 120.00019 * 359.70953 * 15 14 13 17 17 C 1.50697 * 120.00355 * 179.70419 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 C 1.53781 * 113.61609 * 175.00037 * 18 17 15 20 20 C 1.53781 * 87.08070 * 139.98229 * 19 18 17 21 21 C 1.53786 * 87.17350 * 334.52830 * 20 19 18 22 22 C 1.48145 * 104.32132 * 320.10702 * 14 13 11 23 23 C 1.54290 * 110.33826 * 175.00107 * 11 10 9 24 24 H 1.08995 * 110.43630 * 359.95678 * 23 11 10 25 25 C 1.52996 * 110.33914 * 237.74132 * 23 11 10 26 26 F 1.39904 * 109.47580 * 303.01194 * 25 23 11 27 27 F 1.39904 * 109.47441 * 63.01469 * 25 23 11 28 28 F 1.39906 * 109.46856 * 183.01012 * 25 23 11 29 29 H 0.96996 * 120.00428 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00392 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.46691 * 60.00009 * 10 9 7 32 32 H 1.08999 * 109.46990 * 300.00479 * 10 9 7 33 33 H 1.08996 * 110.54065 * 146.48535 * 13 11 10 34 34 H 1.09008 * 110.46549 * 23.92791 * 13 11 10 35 35 H 1.08997 * 109.47086 * 59.99898 * 17 15 14 36 36 H 1.09006 * 109.47329 * 300.00383 * 17 15 14 37 37 H 1.08996 * 112.84723 * 43.80856 * 18 17 15 38 38 H 1.08999 * 113.61181 * 25.43284 * 19 18 17 39 39 H 1.09000 * 113.69133 * 254.54111 * 19 18 17 40 40 H 1.09002 * 113.61445 * 89.11830 * 20 19 18 41 41 H 1.09002 * 113.61408 * 219.93560 * 20 19 18 42 42 H 1.08992 * 113.61675 * 140.02412 * 21 20 19 43 43 H 1.09000 * 113.60973 * 270.92699 * 21 20 19 44 44 H 1.09008 * 110.40769 * 158.62777 * 22 14 13 45 45 H 1.09001 * 110.41249 * 281.06062 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8754 -1.5141 0.8160 13 6 6.0568 -1.5919 -1.3555 14 7 6.5190 -2.7593 -2.1417 15 6 6.3235 -3.0030 -3.4527 16 8 5.6977 -2.2147 -4.1293 17 6 6.8826 -4.2550 -4.0779 18 6 6.5207 -4.2883 -5.5642 19 6 7.1486 -5.4681 -6.3248 20 6 5.8113 -5.5951 -7.0735 21 6 5.1518 -4.9338 -5.8518 22 6 7.2504 -3.5950 -1.1612 23 6 6.4071 -3.5100 0.1292 24 1 5.7251 -4.3579 0.1927 25 6 7.3176 -3.4676 1.3579 26 9 8.1735 -2.3647 1.2665 27 9 6.5368 -3.3574 2.5136 28 9 8.0753 -4.6423 1.4175 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8492 -3.0429 -0.8876 32 1 3.8485 -3.0418 0.8924 33 1 6.8719 -0.8822 -1.2139 34 1 5.2138 -1.1098 -1.8508 35 1 6.4601 -5.1288 -3.5818 36 1 7.9670 -4.2634 -3.9674 37 1 6.6632 -3.3262 -6.0561 38 1 7.3770 -6.3246 -5.6905 39 1 7.9824 -5.1819 -6.9659 40 1 5.7587 -4.9904 -7.9789 41 1 5.4973 -6.6264 -7.2344 42 1 4.3744 -4.2151 -6.1108 43 1 4.8352 -5.6445 -5.0884 44 1 7.3091 -4.6262 -1.5095 45 1 8.2492 -3.1935 -0.9896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700931977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:56 Heat of formation + Delta-G solvation = -156.444536 kcal Electronic energy + Delta-G solvation = -30217.060638 eV Core-core repulsion = 25627.392130 eV Total energy + Delta-G solvation = -4589.668508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.26417 -47.76166 -47.69371 -40.38380 -38.99499 -37.59670 -34.87609 -32.67376 -31.37291 -30.82642 -29.25981 -26.11165 -25.96843 -25.73777 -23.77672 -22.99463 -21.63221 -20.47903 -19.66293 -19.42204 -18.66080 -18.30841 -17.86939 -17.56421 -16.91501 -16.05826 -15.81163 -15.15778 -14.84484 -14.67908 -14.56017 -14.51543 -14.43169 -14.16145 -14.09079 -13.95118 -13.84329 -13.65345 -13.23460 -13.02488 -12.71492 -12.62082 -12.57893 -12.26103 -12.03757 -11.90022 -11.86483 -11.63152 -11.26976 -11.12529 -10.83667 -10.78928 -10.62716 -10.47746 -10.35188 -10.17017 -9.79851 -9.60412 -8.94438 -8.84595 -7.27956 -5.77719 -3.14657 2.43804 2.62484 2.85208 3.37409 3.40825 3.46069 3.58481 3.62701 3.79354 4.21803 4.40869 4.41765 4.46278 4.51370 4.58826 4.69757 4.74870 4.77971 4.93997 4.99868 5.10489 5.14194 5.26523 5.33974 5.45619 5.50134 5.52347 5.55825 5.57615 5.67785 5.71115 5.75273 5.80440 5.98788 6.02472 6.08522 6.11718 6.35878 6.46285 6.56458 7.43222 7.95419 8.13352 8.40122 9.17679 9.89970 10.08023 11.40467 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.007771 B = 0.004542 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.396351 B = 6162.897168 C = 8893.270229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.753 5.753 10 C 0.169 3.831 11 C -0.106 4.106 12 H 0.097 0.903 13 C 0.107 3.893 14 N -0.621 5.621 15 C 0.535 3.465 16 O -0.524 6.524 17 C -0.127 4.127 18 C -0.096 4.096 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.135 4.135 22 C 0.111 3.889 23 C -0.149 4.149 24 H 0.131 0.869 25 C 0.461 3.539 26 F -0.181 7.181 27 F -0.175 7.175 28 F -0.184 7.184 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.105 -13.094 -5.527 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.399 5.399 10 C 0.042 3.958 11 C -0.126 4.126 12 H 0.115 0.885 13 C -0.015 4.015 14 N -0.357 5.357 15 C 0.324 3.676 16 O -0.399 6.399 17 C -0.167 4.167 18 C -0.114 4.114 19 C -0.175 4.175 20 C -0.180 4.180 21 C -0.173 4.173 22 C -0.013 4.013 23 C -0.170 4.170 24 H 0.149 0.851 25 C 0.407 3.593 26 F -0.162 7.162 27 F -0.156 7.156 28 F -0.166 7.166 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.509 -12.762 -6.017 24.893 hybrid contribution 0.711 1.192 0.534 1.487 sum 21.220 -11.570 -5.483 24.783 Atomic orbital electron populations 1.69694 1.05116 1.25898 1.57261 1.24651 0.95214 0.97190 1.01739 0.86583 0.79236 0.85029 0.77926 1.20872 1.21623 1.20297 1.18994 0.80340 0.94796 1.43483 0.89197 1.42640 1.04176 1.01820 1.91241 1.20630 0.86046 0.89954 0.99159 1.22518 0.97789 0.93626 0.98659 0.88504 1.22571 1.00761 0.88283 0.89931 1.48932 1.55283 1.23570 1.07879 1.20359 0.79699 0.87962 0.79566 1.90758 1.40152 1.48693 1.60286 1.21706 1.02146 0.96043 0.96793 1.22408 0.97029 0.99049 0.92941 1.22972 0.97202 0.98272 0.99013 1.22792 0.96637 1.00899 0.97679 1.22999 0.96853 0.99599 0.97819 1.22258 0.95049 0.97290 0.86671 1.23497 0.97668 1.04213 0.91582 0.85079 1.20339 0.79869 0.73403 0.85728 1.93182 1.72350 1.54370 1.96310 1.93237 1.74305 1.95711 1.52329 1.93183 1.77873 1.48690 1.96845 0.92991 0.80592 0.94978 0.94862 0.90890 0.87863 0.88798 0.88917 0.88211 0.90145 0.91543 0.90264 0.91578 0.90980 0.90270 0.88741 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.27 27.74 -169.99 -4.71 17.56 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.60 5.03 -59.90 -0.30 -17.90 16 10 C 0.17 3.09 5.38 -4.04 -0.02 3.07 16 11 C -0.11 -1.47 2.39 -89.01 -0.21 -1.68 16 12 H 0.10 1.35 7.39 -51.93 -0.38 0.97 16 13 C 0.11 1.51 6.50 -2.20 -0.01 1.50 16 14 N -0.62 -7.60 3.31 -169.06 -0.56 -8.16 16 15 C 0.53 7.18 7.91 -10.99 -0.09 7.09 16 16 O -0.52 -9.48 16.02 5.56 0.09 -9.39 16 17 C -0.13 -1.15 4.52 -27.88 -0.13 -1.27 16 18 C -0.10 -0.93 3.16 -89.67 -0.28 -1.21 16 19 C -0.14 -1.02 7.64 -25.92 -0.20 -1.22 16 20 C -0.14 -1.17 8.07 -25.92 -0.21 -1.38 16 21 C -0.14 -1.38 7.65 -25.77 -0.20 -1.58 16 22 C 0.11 0.96 6.19 -2.41 -0.01 0.95 16 23 C -0.15 -1.52 2.72 -89.22 -0.24 -1.76 16 24 H 0.13 1.20 7.72 -51.93 -0.40 0.80 16 25 C 0.46 4.84 2.51 37.16 0.09 4.93 16 26 F -0.18 -1.99 16.04 2.25 0.04 -1.95 16 27 F -0.17 -2.18 17.06 2.25 0.04 -2.15 16 28 F -0.18 -1.79 17.11 2.25 0.04 -1.75 16 29 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.36 8.24 5.47 -40.82 -0.22 8.01 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.84 7.33 -51.92 -0.38 1.46 16 35 H 0.09 0.70 7.66 -51.93 -0.40 0.30 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.15 7.67 -51.93 -0.40 0.75 16 38 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 44 H 0.09 0.57 7.30 -51.92 -0.38 0.19 16 45 H 0.08 0.63 7.32 -51.93 -0.38 0.25 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -33.96 373.02 -7.49 -41.45 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.75 Total: 4.97 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.77 Total: 0.43 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.09 Total: -54.80 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.11 Total: -5.85 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.96 -7.49 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700931977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.991 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds