Wall clock time and date at job start Tue Mar 31 2020 21:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48504 * 109.46841 * 269.99408 * 3 2 1 5 5 H 1.48500 * 109.47264 * 29.99425 * 3 2 1 6 6 H 1.48494 * 109.47172 * 149.99659 * 3 2 1 7 7 C 1.38813 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99910 * 180.02562 * 7 2 1 10 10 C 1.46507 * 120.00080 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47263 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.30461 * 52.83269 * 11 10 9 13 13 C 1.54784 * 110.52617 * 290.59532 * 11 10 9 14 14 N 1.48142 * 104.42118 * 265.22652 * 13 11 10 15 15 C 1.34773 * 127.84126 * 140.36749 * 14 13 11 16 16 O 1.21283 * 120.00019 * 359.70953 * 15 14 13 17 17 C 1.50697 * 120.00355 * 179.70419 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 C 1.53781 * 113.61609 * 175.00037 * 18 17 15 20 20 C 1.53781 * 87.08070 * 139.98229 * 19 18 17 21 21 C 1.53786 * 87.17350 * 334.52830 * 20 19 18 22 22 C 1.48145 * 104.32132 * 320.10702 * 14 13 11 23 23 C 1.54290 * 110.33826 * 175.00107 * 11 10 9 24 24 H 1.08995 * 110.43630 * 359.95678 * 23 11 10 25 25 C 1.52996 * 110.33914 * 237.74132 * 23 11 10 26 26 F 1.39904 * 109.47580 * 303.01194 * 25 23 11 27 27 F 1.39904 * 109.47441 * 63.01469 * 25 23 11 28 28 F 1.39906 * 109.46856 * 183.01012 * 25 23 11 29 29 H 0.96996 * 120.00428 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00392 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.46691 * 60.00009 * 10 9 7 32 32 H 1.08999 * 109.46990 * 300.00479 * 10 9 7 33 33 H 1.08996 * 110.54065 * 146.48535 * 13 11 10 34 34 H 1.09008 * 110.46549 * 23.92791 * 13 11 10 35 35 H 1.08997 * 109.47086 * 59.99898 * 17 15 14 36 36 H 1.09006 * 109.47329 * 300.00383 * 17 15 14 37 37 H 1.08996 * 112.84723 * 43.80856 * 18 17 15 38 38 H 1.08999 * 113.61181 * 25.43284 * 19 18 17 39 39 H 1.09000 * 113.69133 * 254.54111 * 19 18 17 40 40 H 1.09002 * 113.61445 * 89.11830 * 20 19 18 41 41 H 1.09002 * 113.61408 * 219.93560 * 20 19 18 42 42 H 1.08992 * 113.61675 * 140.02412 * 21 20 19 43 43 H 1.09000 * 113.60973 * 270.92699 * 21 20 19 44 44 H 1.09008 * 110.40769 * 158.62777 * 22 14 13 45 45 H 1.09001 * 110.41249 * 281.06062 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8754 -1.5141 0.8160 13 6 6.0568 -1.5919 -1.3555 14 7 6.5190 -2.7593 -2.1417 15 6 6.3235 -3.0030 -3.4527 16 8 5.6977 -2.2147 -4.1293 17 6 6.8826 -4.2550 -4.0779 18 6 6.5207 -4.2883 -5.5642 19 6 7.1486 -5.4681 -6.3248 20 6 5.8113 -5.5951 -7.0735 21 6 5.1518 -4.9338 -5.8518 22 6 7.2504 -3.5950 -1.1612 23 6 6.4071 -3.5100 0.1292 24 1 5.7251 -4.3579 0.1927 25 6 7.3176 -3.4676 1.3579 26 9 8.1735 -2.3647 1.2665 27 9 6.5368 -3.3574 2.5136 28 9 8.0753 -4.6423 1.4175 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0007 31 1 3.8492 -3.0429 -0.8876 32 1 3.8485 -3.0418 0.8924 33 1 6.8719 -0.8822 -1.2139 34 1 5.2138 -1.1098 -1.8508 35 1 6.4601 -5.1288 -3.5818 36 1 7.9670 -4.2634 -3.9674 37 1 6.6632 -3.3262 -6.0561 38 1 7.3770 -6.3246 -5.6905 39 1 7.9824 -5.1819 -6.9659 40 1 5.7587 -4.9904 -7.9789 41 1 5.4973 -6.6264 -7.2344 42 1 4.3744 -4.2151 -6.1108 43 1 4.8352 -5.6445 -5.0884 44 1 7.3091 -4.6262 -1.5095 45 1 8.2492 -3.1935 -0.9896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700931977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:41 Heat of formation + Delta-G solvation = -178.036104 kcal Electronic energy + Delta-G solvation = -30217.996918 eV Core-core repulsion = 25627.392130 eV Total energy + Delta-G solvation = -4590.604788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 15.10 seconds Orbital eigenvalues (eV) -51.09697 -48.57124 -48.55574 -41.35958 -39.83956 -38.62951 -36.62218 -34.13798 -33.04604 -31.67881 -30.55072 -27.49191 -26.83299 -26.42525 -25.11491 -24.09772 -22.99453 -21.61738 -20.53754 -20.20679 -19.88825 -19.35605 -19.10508 -18.68013 -17.92709 -16.91855 -16.81454 -16.55159 -16.07869 -15.95281 -15.57988 -15.51248 -15.38235 -15.30177 -14.98203 -14.93668 -14.77105 -14.69184 -14.51248 -14.26366 -14.00786 -13.81543 -13.57069 -13.26339 -13.22636 -13.03926 -12.87031 -12.75467 -12.45137 -12.34824 -12.28409 -12.14040 -11.94507 -11.75977 -11.49131 -11.24327 -11.05617 -11.03932 -10.81507 -9.87056 -9.36377 -8.07018 -5.41229 1.32975 1.38172 1.43876 1.54860 1.66747 1.95186 2.44292 2.71729 2.74464 2.94026 3.24847 3.36542 3.54711 3.59083 3.73180 3.75081 3.79804 3.83124 3.98087 4.02010 4.06978 4.16843 4.32649 4.43918 4.46344 4.57174 4.65750 4.70254 4.74814 4.79720 4.88926 4.91283 4.94380 4.99142 5.04050 5.12128 5.18403 5.21116 5.41638 5.65898 5.69998 6.16130 6.49032 7.02628 7.14467 7.77175 7.95233 9.14438 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.007771 B = 0.004542 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.396351 B = 6162.897168 C = 8893.270229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.950 3.050 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.246 1.246 7 C -0.236 4.236 8 H 0.057 0.943 9 N -0.756 5.756 10 C 0.168 3.832 11 C -0.097 4.097 12 H 0.100 0.900 13 C 0.105 3.895 14 N -0.621 5.621 15 C 0.526 3.474 16 O -0.585 6.585 17 C -0.117 4.117 18 C -0.103 4.103 19 C -0.118 4.118 20 C -0.141 4.141 21 C -0.148 4.148 22 C 0.113 3.887 23 C -0.141 4.141 24 H 0.145 0.855 25 C 0.468 3.532 26 F -0.182 7.182 27 F -0.188 7.188 28 F -0.175 7.175 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.021 0.979 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.087 0.913 44 H 0.133 0.867 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.037 -14.791 -5.054 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.777 3.223 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.170 1.170 7 C -0.367 4.367 8 H 0.075 0.925 9 N -0.402 5.402 10 C 0.042 3.958 11 C -0.117 4.117 12 H 0.118 0.882 13 C -0.018 4.018 14 N -0.355 5.355 15 C 0.317 3.683 16 O -0.465 6.465 17 C -0.156 4.156 18 C -0.121 4.121 19 C -0.155 4.155 20 C -0.179 4.179 21 C -0.185 4.185 22 C -0.010 4.010 23 C -0.162 4.162 24 H 0.163 0.837 25 C 0.414 3.586 26 F -0.163 7.163 27 F -0.170 7.170 28 F -0.156 7.156 29 H 0.067 0.933 30 H 0.199 0.801 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.151 0.849 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 24.518 -14.512 -5.510 29.018 hybrid contribution -0.565 1.631 0.386 1.769 sum 23.953 -12.881 -5.124 27.675 Atomic orbital electron populations 1.69873 1.07122 1.26747 1.59497 1.25482 0.96099 1.01201 1.02406 0.85484 0.79076 0.79827 0.77927 1.21054 1.21807 1.17015 1.18991 0.82613 0.93508 1.41606 0.92529 1.42647 1.02575 1.04013 1.90989 1.20744 0.88874 0.87683 0.98455 1.22290 0.94762 0.95994 0.98629 0.88220 1.22449 0.99992 0.89530 0.89868 1.49018 1.55012 1.23395 1.08072 1.21289 0.78751 0.88675 0.79555 1.90737 1.42963 1.50964 1.61818 1.21789 1.04051 0.94147 0.95631 1.22381 0.97038 0.98793 0.93936 1.22918 0.96615 0.97507 0.98509 1.22796 0.97147 1.01207 0.96704 1.23085 0.96532 0.99462 0.99463 1.22575 0.94813 0.99017 0.84567 1.23455 0.97770 1.02350 0.92592 0.83707 1.20225 0.79733 0.73588 0.85082 1.93186 1.72351 1.54549 1.96260 1.93219 1.74765 1.95802 1.53173 1.93206 1.77551 1.48097 1.96760 0.93264 0.80087 0.96135 0.94531 0.88949 0.92232 0.86278 0.85445 0.90951 0.87819 0.90577 0.90830 0.90307 0.94474 0.89471 0.84851 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.40 13.97 21.65 0.30 -64.09 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.95 46.65 27.74 68.60 1.90 48.55 16 4 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 7 C -0.24 -13.81 10.47 84.03 0.88 -12.93 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 N -0.76 -35.60 5.03 -343.44 -1.73 -37.32 16 10 C 0.17 6.11 5.38 86.38 0.47 6.58 16 11 C -0.10 -2.51 2.39 -9.75 -0.02 -2.53 16 12 H 0.10 2.56 7.39 -2.39 -0.02 2.55 16 13 C 0.10 2.86 6.50 86.67 0.56 3.42 16 14 N -0.62 -13.84 3.31 -807.18 -2.67 -16.51 16 15 C 0.53 13.55 7.91 87.66 0.69 14.24 16 16 O -0.59 -22.03 16.02 -3.04 -0.05 -22.07 16 17 C -0.12 -1.74 4.52 29.85 0.13 -1.61 16 18 C -0.10 -1.87 3.16 -10.18 -0.03 -1.90 16 19 C -0.12 -1.39 7.64 31.12 0.24 -1.15 16 20 C -0.14 -2.13 8.07 31.12 0.25 -1.88 16 21 C -0.15 -3.02 7.65 31.21 0.24 -2.78 16 22 C 0.11 1.44 6.19 86.53 0.54 1.98 16 23 C -0.14 -2.40 2.72 -9.89 -0.03 -2.43 16 24 H 0.15 2.13 7.72 -2.39 -0.02 2.12 16 25 C 0.47 8.17 2.51 71.98 0.18 8.36 16 26 F -0.18 -3.36 16.04 44.97 0.72 -2.63 16 27 F -0.19 -4.23 17.06 44.97 0.77 -3.46 16 28 F -0.17 -2.66 17.11 44.97 0.77 -1.90 16 29 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 30 H 0.37 16.45 5.47 -92.71 -0.51 15.94 16 31 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 2.18 7.33 -2.38 -0.02 2.16 16 35 H 0.12 1.22 7.66 -2.39 -0.02 1.20 16 36 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.07 1.72 7.67 -2.39 -0.02 1.70 16 38 H 0.10 0.79 8.10 -2.39 -0.02 0.77 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 1.59 7.90 -2.39 -0.02 1.57 16 44 H 0.13 0.76 7.30 -2.38 -0.02 0.75 16 45 H 0.10 1.01 7.32 -2.39 -0.02 1.00 16 Total: -1.00 -79.39 373.02 5.02 -74.36 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.44 Total: 20.88 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.57 Total: 4.19 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -4.10 Total: -117.92 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 2.26 Total: -7.99 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.90 Total: 48.55 kcal Total: -79.39 5.02 -74.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700931977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.672 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.10 seconds