Wall clock time and date at job start Tue Mar 31 2020 21:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99277 * 2 1 4 4 H 1.48496 * 109.47296 * 274.97560 * 3 2 1 5 5 H 1.48497 * 109.47658 * 34.98598 * 3 2 1 6 6 H 1.48508 * 109.46721 * 154.98313 * 3 2 1 7 7 C 1.38813 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99754 * 186.84881 * 7 2 1 9 9 N 1.36928 * 119.99907 * 6.85840 * 7 2 1 10 10 C 1.47019 * 125.65172 * 353.97154 * 9 7 2 11 11 C 1.54328 * 107.27381 * 181.02937 * 10 9 7 12 12 C 1.55153 * 102.94207 * 22.19277 * 11 10 9 13 13 H 1.08994 * 111.03858 * 82.58545 * 12 11 10 14 14 C 1.53001 * 111.00492 * 206.42662 * 12 11 10 15 15 C 1.52999 * 109.47170 * 178.65115 * 14 12 11 16 16 N 1.46498 * 109.47322 * 180.02562 * 15 14 12 17 17 C 1.34773 * 119.99941 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00599 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99753 * 179.97438 * 17 16 15 20 20 C 1.52997 * 112.85029 * 48.79948 * 19 17 16 21 21 F 1.39907 * 109.46873 * 69.66810 * 20 19 17 22 22 F 1.39900 * 109.46905 * 189.66400 * 20 19 17 23 23 F 1.39893 * 109.47438 * 309.67095 * 20 19 17 24 24 C 1.53784 * 113.61298 * 277.49218 * 19 17 16 25 25 C 1.53778 * 87.08365 * 270.88737 * 24 19 17 26 26 C 1.53778 * 87.07886 * 334.56503 * 25 24 19 27 27 C 1.47426 * 125.64920 * 173.93704 * 9 7 2 28 28 H 0.96992 * 120.00542 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88602 * 300.44891 * 10 9 7 30 30 H 1.09005 * 109.88234 * 61.45583 * 10 9 7 31 31 H 1.09001 * 110.71692 * 263.83406 * 11 10 9 32 32 H 1.08992 * 110.72285 * 140.55991 * 11 10 9 33 33 H 1.08999 * 109.46803 * 298.64795 * 14 12 11 34 34 H 1.09000 * 109.47218 * 58.64791 * 14 12 11 35 35 H 1.09010 * 109.47239 * 300.00031 * 15 14 12 36 36 H 1.09000 * 109.47315 * 59.99735 * 15 14 12 37 37 H 0.97001 * 119.99778 * 359.97438 * 16 15 14 38 38 H 1.09004 * 113.61047 * 25.43718 * 24 19 17 39 39 H 1.09006 * 113.61224 * 156.33400 * 24 19 17 40 40 H 1.09001 * 113.61148 * 220.01951 * 25 24 19 41 41 H 1.08993 * 113.61156 * 89.11818 * 25 24 19 42 42 H 1.08992 * 113.62140 * 270.88236 * 26 25 24 43 43 H 1.09008 * 113.60775 * 139.97916 * 26 25 24 44 44 H 1.09007 * 110.36592 * 37.06053 * 27 9 7 45 45 H 1.09004 * 110.46072 * 274.79317 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5041 2.6200 0.8027 6 1 3.5963 1.4122 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0845 -1.2053 0.1121 9 7 1.3330 -2.3838 -0.1405 10 6 -0.1290 -2.5346 -0.1755 11 6 -0.4309 -4.0410 -0.3218 12 6 0.8660 -4.7083 0.2074 13 1 0.8578 -4.7711 1.2955 14 6 1.0657 -6.0907 -0.4172 15 6 2.3688 -6.7015 0.1021 16 7 2.5604 -8.0249 -0.4965 17 6 3.6486 -8.7553 -0.1826 18 8 4.4692 -8.3173 0.5957 19 6 3.8454 -10.1169 -0.7979 20 6 3.6558 -10.1158 -2.3161 21 9 4.7129 -9.4242 -2.9175 22 9 3.6347 -11.4339 -2.7843 23 9 2.4468 -9.4882 -2.6347 24 6 3.0720 -11.2351 -0.0795 25 6 4.3077 -11.4043 0.8201 26 6 5.1334 -10.8203 -0.3384 27 6 1.9491 -3.7155 -0.2833 28 1 -0.4850 0.8399 -0.0004 29 1 -0.5628 -2.1579 0.7508 30 1 -0.5379 -1.9880 -1.0253 31 1 -0.5994 -4.3008 -1.3669 32 1 -1.2874 -4.3239 0.2900 33 1 0.2293 -6.7355 -0.1475 34 1 1.1160 -5.9954 -1.5019 35 1 3.2053 -6.0567 -0.1676 36 1 2.3185 -6.7968 1.1867 37 1 1.9035 -8.3757 -1.1181 38 1 2.1889 -10.8824 0.4535 39 1 2.8692 -12.1007 -0.7103 40 1 4.5452 -12.4441 1.0447 41 1 4.2917 -10.7715 1.7073 42 1 5.4943 -11.5723 -1.0400 43 1 5.9146 -10.1326 -0.0144 44 1 2.8413 -3.7894 0.3387 45 1 2.1978 -3.9105 -1.3266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714870035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:44 Heat of formation + Delta-G solvation = -149.047118 kcal Electronic energy + Delta-G solvation = -29763.838724 eV Core-core repulsion = 25174.490993 eV Total energy + Delta-G solvation = -4589.347731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.60854 -48.15405 -48.01600 -40.97608 -38.27569 -37.56025 -35.33867 -33.07165 -31.04360 -29.46612 -28.80652 -26.70690 -26.31185 -24.93795 -24.06316 -22.60951 -21.83905 -20.17325 -19.96332 -19.41659 -18.84947 -18.81949 -18.54645 -16.90689 -16.65129 -16.14054 -15.72215 -15.40630 -15.03472 -14.88547 -14.73950 -14.52126 -14.50131 -14.37413 -14.20329 -14.05528 -13.82724 -13.63555 -13.24638 -12.95911 -12.78644 -12.45191 -12.27409 -11.98450 -11.82057 -11.56183 -11.52995 -11.19271 -11.12827 -11.10380 -10.85624 -10.75165 -10.32095 -10.11763 -9.97001 -9.84308 -9.77896 -9.58650 -9.26793 -8.54465 -6.78054 -5.68961 -3.00922 1.86324 2.40991 2.64824 3.17128 3.37501 3.42770 3.48071 3.49899 3.52321 3.94126 4.10922 4.16439 4.26751 4.53476 4.74389 4.88841 5.01901 5.07486 5.09078 5.26680 5.29921 5.39757 5.48573 5.50496 5.58860 5.66315 5.72275 5.77318 5.84945 6.00486 6.07827 6.19480 6.27153 6.40350 6.56790 6.60579 6.75043 6.99064 7.16901 7.60055 7.67507 7.82398 7.86277 8.30296 9.26071 9.86787 10.53728 11.43347 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.002328 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.150649 B =12026.839151 C =12160.579756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.117 4.117 15 C 0.116 3.884 16 N -0.721 5.721 17 C 0.538 3.462 18 O -0.513 6.513 19 C -0.171 4.171 20 C 0.470 3.530 21 F -0.172 7.172 22 F -0.174 7.174 23 F -0.178 7.178 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.108 4.108 27 C 0.139 3.861 28 H 0.251 0.749 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.404 0.596 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.037 0.963 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -27.980 -2.308 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.176 4.176 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.155 4.155 15 C -0.007 4.007 16 N -0.376 5.376 17 C 0.321 3.679 18 O -0.388 6.388 19 C -0.175 4.175 20 C 0.415 3.585 21 F -0.154 7.154 22 F -0.155 7.155 23 F -0.159 7.159 24 C -0.153 4.153 25 C -0.170 4.170 26 C -0.145 4.145 27 C 0.013 3.987 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.242 0.758 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.055 0.945 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.745 -27.387 -1.760 27.851 hybrid contribution -0.028 0.849 -0.776 1.151 sum 4.718 -26.538 -2.536 27.073 Atomic orbital electron populations 1.69982 1.04918 1.24964 1.57029 1.24821 0.95703 0.97656 1.02308 0.86125 0.78720 0.83648 0.77484 1.21653 1.21796 1.20609 1.19082 0.91122 0.82635 1.42755 0.90465 1.44482 1.01706 1.01170 1.85940 1.21148 0.84452 0.88481 1.00804 1.22894 0.95895 0.99242 0.99591 1.22271 0.97758 0.92177 0.99821 0.90559 1.21752 0.95607 0.96973 1.01164 1.21600 0.99190 0.81663 0.98198 1.46346 1.24103 1.19333 1.47772 1.19083 0.82205 0.84233 0.82390 1.90753 1.43061 1.70345 1.34672 1.23691 1.06279 0.98251 0.89317 1.20048 0.73973 0.73744 0.90705 1.93241 1.56977 1.79476 1.85677 1.93177 1.96183 1.35929 1.90225 1.93065 1.46399 1.82459 1.93997 1.23043 0.98592 0.95453 0.98225 1.22810 0.94274 1.02485 0.97395 1.22895 0.94246 0.99158 0.98240 1.21610 0.94195 0.85914 0.96963 0.93822 0.94075 0.93767 0.92515 0.92323 0.91562 0.91163 0.90520 0.91014 0.75805 0.89382 0.87480 0.89773 0.88759 0.88228 0.88230 0.94508 0.96455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.36 55.49 0.57 -26.96 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.52 29.56 -169.99 -5.02 17.50 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.51 10.26 -15.06 -0.15 -6.66 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 9 N -0.61 -15.82 3.39 -170.07 -0.58 -16.40 16 10 C 0.18 4.31 5.38 -3.06 -0.02 4.30 16 11 C -0.14 -2.51 6.42 -24.90 -0.16 -2.67 16 12 C -0.10 -1.67 3.07 -88.47 -0.27 -1.94 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.12 -1.45 4.84 -26.73 -0.13 -1.58 16 15 C 0.12 1.45 5.52 -4.04 -0.02 1.43 16 16 N -0.72 -7.83 5.28 -60.29 -0.32 -8.15 16 17 C 0.54 6.24 6.64 -10.98 -0.07 6.17 16 18 O -0.51 -7.65 15.74 5.56 0.09 -7.56 16 19 C -0.17 -1.45 0.87 -154.84 -0.13 -1.59 16 20 C 0.47 4.22 2.64 37.16 0.10 4.32 16 21 F -0.17 -1.86 17.18 2.25 0.04 -1.82 16 22 F -0.17 -1.40 15.75 2.25 0.04 -1.37 16 23 F -0.18 -1.61 14.48 2.25 0.03 -1.58 16 24 C -0.12 -0.69 7.10 -25.92 -0.18 -0.87 16 25 C -0.13 -0.81 7.73 -25.92 -0.20 -1.01 16 26 C -0.11 -0.79 6.82 -25.92 -0.18 -0.97 16 27 C 0.14 2.89 5.89 -2.53 -0.01 2.88 16 28 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.04 1.11 7.54 -51.93 -0.39 0.72 16 30 H 0.04 1.20 7.36 -51.93 -0.38 0.82 16 31 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.08 1.10 7.46 -51.92 -0.39 0.71 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 3.67 5.95 -40.82 -0.24 3.43 16 38 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 39 H 0.11 0.49 7.18 -51.93 -0.37 0.11 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.10 0.57 7.83 -51.93 -0.41 0.16 16 43 H 0.10 0.88 7.43 -51.92 -0.39 0.50 16 44 H 0.04 0.76 8.07 -51.92 -0.42 0.34 16 45 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -32.54 367.73 -7.89 -40.43 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.74 Total: -1.08 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -1.54 Total: 1.45 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.32 Total: -51.51 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.09 Total: -7.56 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.11 Total: -4.77 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.54 -7.89 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714870035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.620 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds