Wall clock time and date at job start Tue Mar 31 2020 21:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99277 * 2 1 4 4 H 1.48496 * 109.47296 * 274.97560 * 3 2 1 5 5 H 1.48497 * 109.47658 * 34.98598 * 3 2 1 6 6 H 1.48508 * 109.46721 * 154.98313 * 3 2 1 7 7 C 1.38813 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99754 * 186.84881 * 7 2 1 9 9 N 1.36928 * 119.99907 * 6.85840 * 7 2 1 10 10 C 1.47019 * 125.65172 * 353.97154 * 9 7 2 11 11 C 1.54328 * 107.27381 * 181.02937 * 10 9 7 12 12 C 1.55153 * 102.94207 * 22.19277 * 11 10 9 13 13 H 1.08994 * 111.03858 * 82.58545 * 12 11 10 14 14 C 1.53001 * 111.00492 * 206.42662 * 12 11 10 15 15 C 1.52999 * 109.47170 * 178.65115 * 14 12 11 16 16 N 1.46498 * 109.47322 * 180.02562 * 15 14 12 17 17 C 1.34773 * 119.99941 * 180.02562 * 16 15 14 18 18 O 1.21280 * 120.00599 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99753 * 179.97438 * 17 16 15 20 20 C 1.52997 * 112.85029 * 48.79948 * 19 17 16 21 21 F 1.39907 * 109.46873 * 69.66810 * 20 19 17 22 22 F 1.39900 * 109.46905 * 189.66400 * 20 19 17 23 23 F 1.39893 * 109.47438 * 309.67095 * 20 19 17 24 24 C 1.53784 * 113.61298 * 277.49218 * 19 17 16 25 25 C 1.53778 * 87.08365 * 270.88737 * 24 19 17 26 26 C 1.53778 * 87.07886 * 334.56503 * 25 24 19 27 27 C 1.47426 * 125.64920 * 173.93704 * 9 7 2 28 28 H 0.96992 * 120.00542 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88602 * 300.44891 * 10 9 7 30 30 H 1.09005 * 109.88234 * 61.45583 * 10 9 7 31 31 H 1.09001 * 110.71692 * 263.83406 * 11 10 9 32 32 H 1.08992 * 110.72285 * 140.55991 * 11 10 9 33 33 H 1.08999 * 109.46803 * 298.64795 * 14 12 11 34 34 H 1.09000 * 109.47218 * 58.64791 * 14 12 11 35 35 H 1.09010 * 109.47239 * 300.00031 * 15 14 12 36 36 H 1.09000 * 109.47315 * 59.99735 * 15 14 12 37 37 H 0.97001 * 119.99778 * 359.97438 * 16 15 14 38 38 H 1.09004 * 113.61047 * 25.43718 * 24 19 17 39 39 H 1.09006 * 113.61224 * 156.33400 * 24 19 17 40 40 H 1.09001 * 113.61148 * 220.01951 * 25 24 19 41 41 H 1.08993 * 113.61156 * 89.11818 * 25 24 19 42 42 H 1.08992 * 113.62140 * 270.88236 * 26 25 24 43 43 H 1.09008 * 113.60775 * 139.97916 * 26 25 24 44 44 H 1.09007 * 110.36592 * 37.06053 * 27 9 7 45 45 H 1.09004 * 110.46072 * 274.79317 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5041 2.6200 0.8027 6 1 3.5963 1.4122 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0845 -1.2053 0.1121 9 7 1.3330 -2.3838 -0.1405 10 6 -0.1290 -2.5346 -0.1755 11 6 -0.4309 -4.0410 -0.3218 12 6 0.8660 -4.7083 0.2074 13 1 0.8578 -4.7711 1.2955 14 6 1.0657 -6.0907 -0.4172 15 6 2.3688 -6.7015 0.1021 16 7 2.5604 -8.0249 -0.4965 17 6 3.6486 -8.7553 -0.1826 18 8 4.4692 -8.3173 0.5957 19 6 3.8454 -10.1169 -0.7979 20 6 3.6558 -10.1158 -2.3161 21 9 4.7129 -9.4242 -2.9175 22 9 3.6347 -11.4339 -2.7843 23 9 2.4468 -9.4882 -2.6347 24 6 3.0720 -11.2351 -0.0795 25 6 4.3077 -11.4043 0.8201 26 6 5.1334 -10.8203 -0.3384 27 6 1.9491 -3.7155 -0.2833 28 1 -0.4850 0.8399 -0.0004 29 1 -0.5628 -2.1579 0.7508 30 1 -0.5379 -1.9880 -1.0253 31 1 -0.5994 -4.3008 -1.3669 32 1 -1.2874 -4.3239 0.2900 33 1 0.2293 -6.7355 -0.1475 34 1 1.1160 -5.9954 -1.5019 35 1 3.2053 -6.0567 -0.1676 36 1 2.3185 -6.7968 1.1867 37 1 1.9035 -8.3757 -1.1181 38 1 2.1889 -10.8824 0.4535 39 1 2.8692 -12.1007 -0.7103 40 1 4.5452 -12.4441 1.0447 41 1 4.2917 -10.7715 1.7073 42 1 5.4943 -11.5723 -1.0400 43 1 5.9146 -10.1326 -0.0144 44 1 2.8413 -3.7894 0.3387 45 1 2.1978 -3.9105 -1.3266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714870035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:43 Heat of formation + Delta-G solvation = -168.955910 kcal Electronic energy + Delta-G solvation = -29764.702034 eV Core-core repulsion = 25174.490993 eV Total energy + Delta-G solvation = -4590.211041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.31185 -48.83803 -48.75116 -41.75864 -39.56833 -38.62736 -36.52733 -34.80567 -32.63107 -30.89279 -29.91604 -28.13973 -26.92023 -26.60002 -25.04007 -23.72099 -22.75242 -21.83025 -21.21952 -20.45251 -19.58887 -19.53169 -19.28765 -18.87906 -17.36034 -17.16393 -17.01046 -16.58852 -16.26493 -15.99135 -15.61777 -15.60048 -15.48898 -15.20148 -15.14440 -15.00686 -14.91488 -14.71115 -14.13437 -13.96849 -13.85971 -13.70614 -13.49940 -13.40755 -13.27104 -13.09400 -12.83546 -12.67704 -12.28891 -12.07476 -12.01031 -11.80064 -11.76348 -11.65252 -11.59918 -11.42361 -11.33360 -11.05187 -10.70304 -10.24584 -8.89197 -7.87931 -5.22039 1.05673 1.43314 1.45405 1.54412 1.65640 1.81712 2.48046 2.50829 2.68597 2.85822 3.29913 3.31763 3.44360 3.53657 3.64444 3.67079 3.78505 3.95691 4.13347 4.23352 4.32408 4.34054 4.56708 4.59178 4.64989 4.67419 4.73456 4.80247 4.87555 4.90329 4.97057 5.01342 5.09527 5.14462 5.22759 5.28714 5.29274 5.44537 5.51034 5.70759 5.77824 6.20007 6.30092 6.95847 7.09853 7.77856 8.42607 9.23003 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.002328 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.150649 B =12026.839151 C =12160.579756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.631 5.631 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.084 4.084 13 H 0.077 0.923 14 C -0.101 4.101 15 C 0.121 3.879 16 N -0.713 5.713 17 C 0.535 3.465 18 O -0.553 6.553 19 C -0.174 4.174 20 C 0.471 3.529 21 F -0.186 7.186 22 F -0.165 7.165 23 F -0.178 7.178 24 C -0.104 4.104 25 C -0.128 4.128 26 C -0.110 4.110 27 C 0.133 3.867 28 H 0.247 0.753 29 H 0.005 0.995 30 H 0.006 0.994 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.414 0.586 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.033 0.967 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.020 -30.684 -2.701 31.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.357 5.357 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.104 4.104 13 H 0.095 0.905 14 C -0.139 4.139 15 C -0.003 4.003 16 N -0.367 5.367 17 C 0.319 3.681 18 O -0.431 6.431 19 C -0.178 4.178 20 C 0.417 3.583 21 F -0.168 7.168 22 F -0.146 7.146 23 F -0.159 7.159 24 C -0.141 4.141 25 C -0.165 4.165 26 C -0.148 4.148 27 C 0.008 3.992 28 H 0.056 0.944 29 H 0.023 0.977 30 H 0.025 0.975 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.255 0.745 38 H 0.113 0.887 39 H 0.147 0.853 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.543 -30.136 -2.175 30.554 hybrid contribution 0.078 1.681 -0.665 1.810 sum 4.621 -28.455 -2.839 28.967 Atomic orbital electron populations 1.70201 1.06286 1.25293 1.58072 1.25675 0.96646 1.01027 1.02577 0.85082 0.77852 0.79230 0.77343 1.21359 1.21871 1.19341 1.19459 0.91540 0.84181 1.42298 0.90412 1.44838 1.02701 1.02425 1.85783 1.20965 0.83615 0.92606 0.97343 1.22760 0.97501 0.94300 1.01457 1.22148 0.94875 0.93330 1.00047 0.90491 1.21605 0.96622 0.94630 1.01070 1.21401 0.98423 0.82206 0.98235 1.46240 1.24299 1.18596 1.47609 1.19577 0.81554 0.85166 0.81786 1.90737 1.44313 1.71477 1.36540 1.23710 1.08079 0.97115 0.88935 1.20087 0.73588 0.73900 0.90753 1.93217 1.57720 1.79886 1.85966 1.93193 1.96120 1.35176 1.90131 1.93058 1.46322 1.82542 1.94017 1.23135 0.98390 0.94786 0.97800 1.22773 0.94065 1.03420 0.96285 1.22989 0.93371 0.99131 0.99283 1.21824 0.95383 0.84801 0.97194 0.94359 0.97716 0.97540 0.90725 0.89708 0.88230 0.90544 0.92859 0.91181 0.74519 0.88733 0.85297 0.87335 0.90558 0.86227 0.90366 0.94873 0.96067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.72 10.36 21.65 0.22 -58.49 16 2 C -0.07 -3.90 5.48 84.86 0.47 -3.44 16 3 Si 0.98 47.19 29.56 68.60 2.03 49.22 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.25 -14.38 10.26 84.04 0.86 -13.52 16 8 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16 9 N -0.63 -33.63 3.39 -691.97 -2.35 -35.98 16 10 C 0.18 9.04 5.38 86.73 0.47 9.50 16 11 C -0.12 -4.23 6.42 31.78 0.20 -4.02 16 12 C -0.08 -2.64 3.07 -9.40 -0.03 -2.67 16 13 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.10 -2.21 4.84 30.59 0.15 -2.06 16 15 C 0.12 2.83 5.52 86.38 0.48 3.31 16 16 N -0.71 -14.17 5.28 -463.05 -2.44 -16.61 16 17 C 0.53 11.88 6.64 87.66 0.58 12.46 16 18 O -0.55 -16.59 15.74 -3.03 -0.05 -16.64 16 19 C -0.17 -2.64 0.87 -52.40 -0.05 -2.69 16 20 C 0.47 7.50 2.64 71.98 0.19 7.69 16 21 F -0.19 -3.82 17.18 44.97 0.77 -3.05 16 22 F -0.16 -2.20 15.75 44.97 0.71 -1.49 16 23 F -0.18 -2.80 14.48 44.97 0.65 -2.15 16 24 C -0.10 -0.92 7.10 31.12 0.22 -0.70 16 25 C -0.13 -1.30 7.73 31.12 0.24 -1.06 16 26 C -0.11 -1.46 6.82 31.12 0.21 -1.25 16 27 C 0.13 5.50 5.89 86.85 0.51 6.01 16 28 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.00 0.26 7.54 -2.39 -0.02 0.24 16 30 H 0.01 0.36 7.36 -2.38 -0.02 0.34 16 31 H 0.07 2.34 8.04 -2.39 -0.02 2.33 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.05 1.51 7.46 -2.38 -0.02 1.49 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.41 6.39 5.95 -92.71 -0.55 5.84 16 38 H 0.09 0.76 8.09 -2.38 -0.02 0.74 16 39 H 0.13 0.64 7.18 -2.38 -0.02 0.62 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 1.07 8.06 -2.39 -0.02 1.05 16 42 H 0.12 1.08 7.83 -2.39 -0.02 1.06 16 43 H 0.08 1.39 7.43 -2.38 -0.02 1.38 16 44 H 0.03 1.38 8.07 -2.38 -0.02 1.36 16 45 H 0.02 0.88 8.00 -2.38 -0.02 0.86 16 Total: -1.00 -73.93 367.73 4.51 -69.42 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.46 Total: 8.21 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 4.51 Total: 7.57 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.57 Total: -111.09 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.64 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 2.13 Total: -6.70 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -73.93 4.51 -69.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714870035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.536 kcal (2) G-P(sol) polarization free energy of solvation -73.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds